Wall clock time and date at job start Thu Apr 9 2020 12:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48488 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46856 * 299.99596 * 3 2 1 6 6 H 1.48500 * 109.47098 * 59.99312 * 3 2 1 7 7 C 1.37873 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00287 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47322 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47300 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99934 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00200 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99849 * 4.37057 * 13 11 10 15 15 C 1.52995 * 109.47343 * 268.56895 * 14 13 11 16 16 O 1.42905 * 109.47357 * 61.59452 * 15 14 13 17 17 C 1.46500 * 119.99955 * 184.37463 * 13 11 10 18 18 C 1.53785 * 113.61094 * 211.53142 * 17 13 11 19 19 C 1.53952 * 87.01624 * 220.04731 * 18 17 13 20 20 C 1.53774 * 87.11418 * 25.36318 * 19 18 17 21 21 H 0.97005 * 119.99673 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46738 * 59.99955 * 9 7 2 23 23 H 1.08996 * 109.47089 * 300.00185 * 9 7 2 24 24 H 1.09006 * 109.46695 * 59.99999 * 10 9 7 25 25 H 1.08999 * 109.47198 * 300.00744 * 10 9 7 26 26 H 1.09004 * 109.46971 * 28.56725 * 14 13 11 27 27 H 1.08997 * 109.47181 * 148.56272 * 14 13 11 28 28 H 1.09002 * 109.47222 * 181.59370 * 15 14 13 29 29 H 1.09005 * 109.47313 * 301.59528 * 15 14 13 30 30 H 0.96696 * 114.00002 * 180.02562 * 16 15 14 31 31 H 1.08993 * 112.85083 * 342.72638 * 17 13 11 32 32 H 1.08999 * 113.61404 * 334.56733 * 18 17 13 33 33 H 1.08998 * 113.61103 * 105.47153 * 18 17 13 34 34 H 1.09000 * 113.54002 * 270.80937 * 19 18 17 35 35 H 1.09007 * 113.66598 * 139.93350 * 19 18 17 36 36 H 1.08999 * 113.61594 * 220.08796 * 20 19 18 37 37 H 1.09000 * 113.69378 * 89.19934 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1656 -6.1344 0.0018 14 6 3.6274 -6.1362 0.0986 15 6 4.2316 -6.1186 -1.3069 16 8 3.8314 -4.9247 -1.9826 17 6 1.4363 -7.4013 -0.0944 18 6 2.1195 -8.5631 0.6462 19 6 1.7190 -9.4520 -0.5453 20 6 1.7088 -8.1717 -1.3970 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8719 -3.6043 0.8906 25 1 2.8720 -3.6043 -0.8894 26 1 3.9563 -5.2532 0.6465 27 1 3.9556 -7.0330 0.6240 28 1 5.3189 -6.1485 -1.2354 29 1 3.8801 -6.9869 -1.8644 30 1 4.1784 -4.8465 -2.8818 31 1 0.3765 -7.2983 0.1384 32 1 3.1968 -8.4381 0.7550 33 1 1.6275 -8.8352 1.5799 34 1 0.7365 -9.9109 -0.4351 35 1 2.4899 -10.1650 -0.8379 36 1 0.8858 -8.1283 -2.1103 37 1 2.6730 -7.9385 -1.8487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360469294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:01 Heat of formation + Delta-G solvation = -65.062982 kcal Electronic energy + Delta-G solvation = -18020.283718 eV Core-core repulsion = 15184.522455 eV Total energy + Delta-G solvation = -2835.761263 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15726 -37.77519 -36.78141 -33.94136 -33.29305 -30.71501 -29.15325 -26.19003 -25.91038 -24.34280 -22.74775 -21.33943 -19.44809 -18.50830 -17.68306 -16.79861 -16.17689 -15.67737 -15.25586 -15.11019 -14.39899 -14.31030 -13.44450 -13.24138 -13.08360 -12.90658 -12.35822 -12.12699 -11.90862 -11.68872 -11.36161 -11.27953 -10.92109 -10.83261 -10.57876 -10.48675 -10.43492 -9.81112 -9.68258 -9.41094 -9.00586 -8.77492 -8.29099 -8.19269 -5.85817 -3.88808 3.34343 3.38345 3.42835 3.45303 3.49246 4.22898 4.50491 4.55569 4.56644 4.75917 4.88314 4.99717 5.13893 5.26691 5.31784 5.48960 5.51732 5.57513 5.69442 5.73728 5.82661 5.87835 5.96410 6.05820 6.36499 6.45905 6.75423 6.94793 7.21195 7.73419 7.87433 7.91690 8.04200 8.21151 8.53154 8.94511 9.20674 9.73706 11.25476 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039253 B = 0.005566 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.145044 B = 5029.258974 C = 5444.846406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.134 4.134 11 C 0.522 3.478 12 O -0.541 6.541 13 N -0.611 5.611 14 C 0.106 3.894 15 C 0.051 3.949 16 O -0.552 6.552 17 C 0.123 3.877 18 C -0.155 4.155 19 C -0.138 4.138 20 C -0.161 4.161 21 H 0.259 0.741 22 H 0.021 0.979 23 H 0.018 0.982 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.373 0.627 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.111 -18.524 -2.034 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.173 4.173 11 C 0.314 3.686 12 O -0.417 6.417 13 N -0.345 5.345 14 C -0.018 4.018 15 C -0.028 4.028 16 O -0.358 6.358 17 C 0.019 3.981 18 C -0.193 4.193 19 C -0.176 4.176 20 C -0.199 4.199 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.037 0.963 24 H 0.087 0.913 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.132 0.868 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.975 -18.263 -1.447 20.400 hybrid contribution 0.848 0.701 -0.559 1.234 sum 9.823 -17.562 -2.006 20.222 Atomic orbital electron populations 1.70025 1.06032 1.26224 1.50856 1.25029 0.94790 0.99113 0.95581 0.86562 0.80037 0.84042 0.77475 1.19786 1.21105 1.21132 1.21282 0.92934 0.91037 1.50428 0.92634 1.18894 0.93274 0.89715 0.98163 1.22061 1.00704 0.91263 1.03259 1.21619 0.88172 0.85649 0.73192 1.90630 1.14671 1.87379 1.48984 1.47968 1.05867 1.05717 1.74971 1.21665 0.80820 1.03738 0.95535 1.22878 0.97407 0.88084 0.94448 1.86678 1.76686 1.40835 1.31584 1.22491 0.98139 0.82006 0.95468 1.23468 1.01341 0.96255 0.98265 1.22702 1.01816 0.96271 0.96804 1.23640 1.02690 0.95805 0.97768 0.93172 0.96073 0.96344 0.91345 0.87245 0.89098 0.89227 0.93291 0.93252 0.77967 0.86775 0.89516 0.91035 0.90052 0.91278 0.91324 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.43 13.29 55.43 0.74 -27.69 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.52 -15.37 9.11 -34.44 -0.31 -15.69 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 1.06 4.26 -27.88 -0.12 0.95 16 10 C -0.13 -3.01 4.18 -27.89 -0.12 -3.12 16 11 C 0.52 11.15 7.37 -10.99 -0.08 11.07 16 12 O -0.54 -13.79 15.50 5.55 0.09 -13.71 16 13 N -0.61 -9.63 2.65 -165.19 -0.44 -10.07 16 14 C 0.11 1.26 5.50 -4.05 -0.02 1.24 16 15 C 0.05 0.52 7.25 37.15 0.27 0.79 16 16 O -0.55 -7.31 10.25 -35.23 -0.36 -7.67 16 17 C 0.12 1.68 4.17 -67.12 -0.28 1.40 16 18 C -0.16 -1.53 7.50 -25.83 -0.19 -1.72 16 19 C -0.14 -1.22 8.09 -25.83 -0.21 -1.42 16 20 C -0.16 -1.79 7.71 -25.92 -0.20 -1.99 16 21 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 23 H 0.02 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.07 1.43 7.26 -51.93 -0.38 1.05 16 25 H 0.11 2.37 5.10 -51.93 -0.26 2.10 16 26 H 0.09 1.16 6.41 -51.93 -0.33 0.82 16 27 H 0.09 0.79 5.46 -51.93 -0.28 0.51 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.46 5.04 -51.93 -0.26 0.20 16 30 H 0.37 3.32 9.12 45.56 0.42 3.74 16 31 H 0.11 1.83 7.30 -51.93 -0.38 1.45 16 32 H 0.09 0.74 5.62 -51.93 -0.29 0.44 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.91 4.84 -51.93 -0.25 0.66 16 LS Contribution 292.25 15.07 4.40 4.40 Total: -1.00 -36.54 292.25 -6.48 -43.02 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.52 Total: 1.37 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.36 Total: -6.91 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.30 Total: -37.76 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.28 Total: -21.38 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -36.54 -6.48 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360469294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.044 kcal (2) G-P(sol) polarization free energy of solvation -36.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds