Wall clock time and date at job start Thu Apr 9 2020 12:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48488 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46856 * 299.99596 * 3 2 1 6 6 H 1.48500 * 109.47098 * 59.99312 * 3 2 1 7 7 C 1.37873 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00287 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47322 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47300 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99934 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00200 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99849 * 4.37057 * 13 11 10 15 15 C 1.52995 * 109.47343 * 268.56895 * 14 13 11 16 16 O 1.42905 * 109.47357 * 61.59452 * 15 14 13 17 17 C 1.46500 * 119.99955 * 184.37463 * 13 11 10 18 18 C 1.53785 * 113.61094 * 211.53142 * 17 13 11 19 19 C 1.53952 * 87.01624 * 220.04731 * 18 17 13 20 20 C 1.53774 * 87.11418 * 25.36318 * 19 18 17 21 21 H 0.97005 * 119.99673 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46738 * 59.99955 * 9 7 2 23 23 H 1.08996 * 109.47089 * 300.00185 * 9 7 2 24 24 H 1.09006 * 109.46695 * 59.99999 * 10 9 7 25 25 H 1.08999 * 109.47198 * 300.00744 * 10 9 7 26 26 H 1.09004 * 109.46971 * 28.56725 * 14 13 11 27 27 H 1.08997 * 109.47181 * 148.56272 * 14 13 11 28 28 H 1.09002 * 109.47222 * 181.59370 * 15 14 13 29 29 H 1.09005 * 109.47313 * 301.59528 * 15 14 13 30 30 H 0.96696 * 114.00002 * 180.02562 * 16 15 14 31 31 H 1.08993 * 112.85083 * 342.72638 * 17 13 11 32 32 H 1.08999 * 113.61404 * 334.56733 * 18 17 13 33 33 H 1.08998 * 113.61103 * 105.47153 * 18 17 13 34 34 H 1.09000 * 113.54002 * 270.80937 * 19 18 17 35 35 H 1.09007 * 113.66598 * 139.93350 * 19 18 17 36 36 H 1.08999 * 113.61594 * 220.08796 * 20 19 18 37 37 H 1.09000 * 113.69378 * 89.19934 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1656 -6.1344 0.0018 14 6 3.6274 -6.1362 0.0986 15 6 4.2316 -6.1186 -1.3069 16 8 3.8314 -4.9247 -1.9826 17 6 1.4363 -7.4013 -0.0944 18 6 2.1195 -8.5631 0.6462 19 6 1.7190 -9.4520 -0.5453 20 6 1.7088 -8.1717 -1.3970 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8719 -3.6043 0.8906 25 1 2.8720 -3.6043 -0.8894 26 1 3.9563 -5.2532 0.6465 27 1 3.9556 -7.0330 0.6240 28 1 5.3189 -6.1485 -1.2354 29 1 3.8801 -6.9869 -1.8644 30 1 4.1784 -4.8465 -2.8818 31 1 0.3765 -7.2983 0.1384 32 1 3.1968 -8.4381 0.7550 33 1 1.6275 -8.8352 1.5799 34 1 0.7365 -9.9109 -0.4351 35 1 2.4899 -10.1650 -0.8379 36 1 0.8858 -8.1283 -2.1103 37 1 2.6730 -7.9385 -1.8487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360469294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:00 Heat of formation + Delta-G solvation = -92.805934 kcal Electronic energy + Delta-G solvation = -18021.486743 eV Core-core repulsion = 15184.522455 eV Total energy + Delta-G solvation = -2836.964287 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.40972 -39.15975 -37.73755 -35.53716 -35.18097 -32.83499 -30.18709 -28.08833 -26.75737 -25.76117 -23.86882 -23.14706 -20.50752 -19.87783 -18.89579 -18.53173 -17.64380 -17.11614 -16.68753 -16.46088 -16.05040 -15.42684 -14.91466 -14.63381 -14.37708 -14.22692 -13.86407 -13.45089 -13.39503 -13.08544 -12.81680 -12.67518 -12.49103 -12.33060 -12.12850 -11.74803 -11.49512 -11.41228 -11.34722 -11.26439 -10.65000 -10.56698 -10.50377 -9.53297 -8.16908 -6.31234 1.41223 1.43891 1.57446 1.74512 2.11386 2.44085 3.15348 3.40074 3.61644 3.72803 3.88363 3.95353 4.02904 4.18556 4.27948 4.41853 4.53171 4.64152 4.69320 4.72953 4.84567 4.94814 5.00778 5.09282 5.12567 5.14089 5.26961 5.47344 5.51031 5.69116 5.78354 5.87791 6.20541 6.46886 6.86818 7.03733 7.34328 7.39115 8.96554 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039253 B = 0.005566 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.145044 B = 5029.258974 C = 5444.846406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.009 4.009 3 Si 0.978 3.022 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.045 3.955 10 C -0.119 4.119 11 C 0.516 3.484 12 O -0.601 6.601 13 N -0.596 5.596 14 C 0.092 3.908 15 C 0.051 3.949 16 O -0.590 6.590 17 C 0.095 3.905 18 C -0.139 4.139 19 C -0.122 4.122 20 C -0.157 4.157 21 H 0.263 0.737 22 H -0.025 1.025 23 H -0.025 1.025 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.391 0.609 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.764 -19.788 -2.149 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.801 3.199 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.091 0.909 9 C 0.008 3.992 10 C -0.158 4.158 11 C 0.307 3.693 12 O -0.482 6.482 13 N -0.327 5.327 14 C -0.030 4.030 15 C -0.026 4.026 16 O -0.399 6.399 17 C -0.008 4.008 18 C -0.177 4.177 19 C -0.160 4.160 20 C -0.195 4.195 21 H 0.071 0.929 22 H -0.006 1.006 23 H -0.007 1.007 24 H 0.105 0.895 25 H 0.142 0.858 26 H 0.101 0.899 27 H 0.148 0.852 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.241 0.759 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.702 -19.593 -1.574 23.403 hybrid contribution -0.299 1.016 -0.533 1.186 sum 12.403 -18.577 -2.108 22.437 Atomic orbital electron populations 1.70211 1.08438 1.27719 1.51725 1.26191 0.95747 1.04062 0.94574 0.85218 0.79256 0.77766 0.77648 1.17548 1.20438 1.20470 1.21697 0.93826 0.91512 1.50498 0.90851 1.18678 0.93642 0.93001 0.93907 1.21794 0.99216 0.89981 1.04818 1.21385 0.87376 0.87141 0.73429 1.90600 1.17002 1.88350 1.52282 1.47899 1.07726 1.04650 1.72423 1.22144 0.77928 1.05417 0.97525 1.22979 0.99300 0.87460 0.92906 1.86563 1.77665 1.42441 1.33187 1.22823 0.96850 0.82068 0.99067 1.23460 1.02247 0.93488 0.98479 1.22659 1.02924 0.95503 0.94891 1.23654 1.02815 0.96617 0.96436 0.92868 1.00636 1.00691 0.89508 0.85820 0.89920 0.85236 0.89730 0.91980 0.75942 0.90487 0.87078 0.90757 0.89956 0.88345 0.92917 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.22 13.29 21.45 0.28 -61.94 16 2 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 3 Si 0.98 45.93 29.54 68.60 2.03 47.95 16 4 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.54 -32.55 9.11 25.60 0.23 -32.32 16 8 H 0.07 4.09 7.74 -2.91 -0.02 4.06 16 9 C 0.05 2.76 4.26 29.85 0.13 2.89 16 10 C -0.12 -5.51 4.18 29.85 0.12 -5.39 16 11 C 0.52 23.03 7.37 87.65 0.65 23.67 16 12 O -0.60 -33.17 15.50 -3.05 -0.05 -33.22 16 13 N -0.60 -18.53 2.65 -794.92 -2.10 -20.63 16 14 C 0.09 1.91 5.50 86.38 0.48 2.38 16 15 C 0.05 0.87 7.25 71.98 0.52 1.40 16 16 O -0.59 -14.52 10.25 -148.98 -1.53 -16.05 16 17 C 0.10 2.57 4.17 45.52 0.19 2.76 16 18 C -0.14 -2.31 7.50 31.18 0.23 -2.07 16 19 C -0.12 -1.75 8.09 31.18 0.25 -1.49 16 20 C -0.16 -3.23 7.71 31.12 0.24 -2.99 16 21 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 22 H -0.02 -1.71 8.10 -2.39 -0.02 -1.73 16 23 H -0.03 -1.73 8.10 -2.39 -0.02 -1.75 16 24 H 0.09 3.64 7.26 -2.38 -0.02 3.63 16 25 H 0.12 5.39 5.10 -2.39 -0.01 5.38 16 26 H 0.08 1.90 6.41 -2.39 -0.02 1.88 16 27 H 0.13 1.66 5.46 -2.39 -0.01 1.64 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.91 5.04 -2.38 -0.01 0.89 16 30 H 0.39 6.21 9.12 -74.06 -0.68 5.53 16 31 H 0.08 2.65 7.30 -2.39 -0.02 2.63 16 32 H 0.11 1.31 5.62 -2.39 -0.01 1.29 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.79 4.84 -2.39 -0.01 1.78 16 Total: -1.00 -85.95 292.25 2.54 -83.41 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.40 Total: 11.71 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 3.51 Total: -11.24 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.82 Total: -82.57 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -1.57 Total: -49.26 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -85.95 2.54 -83.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360469294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.399 kcal (2) G-P(sol) polarization free energy of solvation -85.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds