Wall clock time and date at job start Thu Apr 9 2020 12:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99699 * 2 1 4 4 H 1.48495 * 109.47194 * 270.00118 * 3 2 1 5 5 H 1.48499 * 109.47121 * 29.99955 * 3 2 1 6 6 H 1.48498 * 109.46944 * 149.99791 * 3 2 1 7 7 C 1.37874 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99764 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99967 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47150 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00331 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99991 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00236 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47478 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47464 * 179.97438 * 15 14 13 17 17 C 1.53781 * 113.61609 * 174.99951 * 16 15 14 18 18 C 1.53781 * 87.08070 * 139.98229 * 17 16 15 19 19 O 1.42905 * 113.61505 * 219.93701 * 18 17 16 20 20 C 1.53786 * 87.17350 * 334.52830 * 18 17 16 21 21 H 0.97004 * 120.00595 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46956 * 60.00766 * 9 7 2 23 23 H 1.08997 * 109.47652 * 300.00543 * 9 7 2 24 24 H 1.09000 * 109.46531 * 60.00548 * 10 9 7 25 25 H 1.08997 * 109.47321 * 300.00788 * 10 9 7 26 26 H 0.97000 * 120.00237 * 0.02562 * 13 11 10 27 27 H 1.09008 * 109.47373 * 60.00129 * 14 13 11 28 28 H 1.08997 * 109.47285 * 300.00152 * 14 13 11 29 29 H 1.08997 * 109.47139 * 59.99772 * 15 14 13 30 30 H 1.09006 * 109.47243 * 300.00277 * 15 14 13 31 31 H 1.08996 * 112.84723 * 43.80771 * 16 15 14 32 32 H 1.08999 * 113.61181 * 25.43284 * 17 16 15 33 33 H 1.08998 * 113.61680 * 254.52836 * 17 16 15 34 34 H 1.09002 * 113.61445 * 89.11830 * 18 17 16 35 35 H 0.96696 * 114.00145 * 178.47219 * 19 18 17 36 36 H 1.08992 * 113.61675 * 140.02412 * 20 18 17 37 37 H 1.09000 * 113.60973 * 270.92699 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5285 -2.6363 0.0014 12 8 6.1350 -1.5860 0.0009 13 7 6.2025 -3.8035 0.0020 14 6 7.6675 -3.8035 0.0027 15 6 8.1776 -5.2459 0.0040 16 6 9.7076 -5.2459 0.0040 17 6 10.3237 -6.6494 0.1280 18 6 11.3700 -6.1955 -0.9035 19 8 11.7018 -7.2013 -1.8629 20 6 10.3248 -5.1856 -1.4062 21 1 -0.4851 0.8400 0.0004 22 1 3.8751 -0.6796 0.8895 23 1 3.8745 -0.6806 -0.8904 24 1 3.6580 -3.1511 -0.8880 25 1 3.6585 -3.1493 0.8920 26 1 5.7176 -4.6436 0.0021 27 1 8.0305 -3.2894 0.8927 28 1 8.0312 -3.2899 -0.8873 29 1 7.8146 -5.7604 -0.8857 30 1 7.8138 -5.7592 0.8942 31 1 10.1308 -4.5204 0.6986 32 1 9.6722 -7.4456 -0.2322 33 1 10.7427 -6.8569 1.1126 34 1 12.2487 -5.7292 -0.4579 35 1 12.3420 -6.9142 -2.5283 36 1 10.7447 -4.2122 -1.6593 37 1 9.6737 -5.5823 -2.1851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360490873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:03 Heat of formation + Delta-G solvation = -90.739533 kcal Electronic energy + Delta-G solvation = -16584.134000 eV Core-core repulsion = 13747.259318 eV Total energy + Delta-G solvation = -2836.874682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88856 -39.09942 -36.00246 -34.55647 -33.45186 -31.45240 -30.41039 -26.42603 -26.09382 -24.37813 -21.89929 -21.16307 -19.97001 -19.51362 -17.82447 -17.15024 -16.07789 -15.88879 -15.65805 -15.30429 -14.74009 -14.54351 -14.06800 -13.53701 -13.20467 -12.79994 -12.65354 -12.52605 -12.39766 -11.96043 -11.64895 -11.40357 -11.27924 -11.02709 -10.93665 -10.55201 -10.15733 -10.11517 -10.02524 -9.76585 -9.21341 -9.13959 -8.83806 -8.49269 -6.01645 -4.00266 3.16234 3.39064 3.44813 3.46403 3.56814 3.85621 4.14345 4.22385 4.40921 4.52344 4.52786 4.83217 5.04379 5.10742 5.26957 5.33870 5.37426 5.41936 5.45925 5.51296 5.61113 5.75355 5.89956 5.97345 6.09729 6.11824 6.13209 6.66150 6.72796 7.26084 7.38718 7.45791 7.78537 7.83400 8.51936 8.69317 9.01586 9.61516 11.11204 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066355 B = 0.003268 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.873956 B = 8565.664895 C = 8763.860013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.123 4.123 11 C 0.509 3.491 12 O -0.542 6.542 13 N -0.744 5.744 14 C 0.120 3.880 15 C -0.118 4.118 16 C -0.106 4.106 17 C -0.124 4.124 18 C 0.073 3.927 19 O -0.562 6.562 20 C -0.166 4.166 21 H 0.263 0.737 22 H 0.023 0.977 23 H 0.019 0.981 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.398 0.602 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.377 0.623 36 H 0.070 0.930 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.352 -14.088 -1.071 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.163 4.163 11 C 0.297 3.703 12 O -0.419 6.419 13 N -0.397 5.397 14 C -0.004 4.004 15 C -0.156 4.156 16 C -0.125 4.125 17 C -0.161 4.161 18 C 0.014 3.986 19 O -0.368 6.368 20 C -0.204 4.204 21 H 0.073 0.927 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.232 0.768 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.224 0.776 36 H 0.089 0.911 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 22.215 -13.533 -0.709 26.022 hybrid contribution 0.538 0.826 -0.347 1.045 sum 22.753 -12.707 -1.056 26.082 Atomic orbital electron populations 1.69911 1.06295 1.26959 1.51145 1.24977 0.94713 0.99247 0.94351 0.86788 0.80619 0.83369 0.78738 1.20251 1.21456 1.18527 1.21124 0.89315 0.94559 1.51255 0.90939 1.19366 0.96368 0.90289 0.97636 1.21665 0.88059 1.03224 1.03302 1.21537 0.91589 0.82827 0.74338 1.90647 1.70891 1.31526 1.48800 1.46183 1.06652 1.09226 1.77675 1.21244 0.80804 0.96326 1.02050 1.21737 0.94501 0.96440 1.02926 1.22293 0.94886 0.97556 0.97734 1.23112 0.97198 0.97459 0.98362 1.23383 0.95538 0.89141 0.90538 1.86526 1.66121 1.40464 1.43658 1.23828 0.99128 0.99951 0.97483 0.92730 0.95849 0.96301 0.89657 0.89622 0.76789 0.91953 0.91911 0.91035 0.90942 0.88593 0.89068 0.90831 0.90185 0.77576 0.91142 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.41 5.64 -27.88 -0.16 -2.56 16 11 C 0.51 9.43 7.83 -10.99 -0.09 9.34 16 12 O -0.54 -12.29 15.98 5.56 0.09 -12.20 16 13 N -0.74 -9.96 5.56 -60.30 -0.33 -10.29 16 14 C 0.12 1.39 5.66 -4.05 -0.02 1.37 16 15 C -0.12 -0.96 5.17 -26.73 -0.14 -1.10 16 16 C -0.11 -0.77 3.66 -89.67 -0.33 -1.10 16 17 C -0.12 -0.88 7.47 -25.92 -0.19 -1.08 16 18 C 0.07 0.51 5.20 -25.92 -0.13 0.37 16 19 O -0.56 -4.41 13.67 -35.23 -0.48 -4.89 16 20 C -0.17 -1.21 7.48 -25.77 -0.19 -1.41 16 21 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.02 0.62 7.15 -51.93 -0.37 0.24 16 23 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 24 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.40 4.13 8.47 -40.82 -0.35 3.79 16 27 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.38 1.38 9.12 45.56 0.42 1.80 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -35.47 309.65 -7.06 -42.53 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.32 Total: -0.68 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.78 Total: -9.79 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.44 Total: -37.77 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.39 Total: -17.09 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.47 -7.06 -42.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360490873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.213 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds