Wall clock time and date at job start Thu Apr 9 2020 12:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99699 * 2 1 4 4 H 1.48495 * 109.47194 * 270.00118 * 3 2 1 5 5 H 1.48499 * 109.47121 * 29.99955 * 3 2 1 6 6 H 1.48498 * 109.46944 * 149.99791 * 3 2 1 7 7 C 1.37874 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99764 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99967 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47150 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00331 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99991 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00236 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47478 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47464 * 179.97438 * 15 14 13 17 17 C 1.53781 * 113.61609 * 174.99951 * 16 15 14 18 18 C 1.53781 * 87.08070 * 139.98229 * 17 16 15 19 19 O 1.42905 * 113.61505 * 219.93701 * 18 17 16 20 20 C 1.53786 * 87.17350 * 334.52830 * 18 17 16 21 21 H 0.97004 * 120.00595 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46956 * 60.00766 * 9 7 2 23 23 H 1.08997 * 109.47652 * 300.00543 * 9 7 2 24 24 H 1.09000 * 109.46531 * 60.00548 * 10 9 7 25 25 H 1.08997 * 109.47321 * 300.00788 * 10 9 7 26 26 H 0.97000 * 120.00237 * 0.02562 * 13 11 10 27 27 H 1.09008 * 109.47373 * 60.00129 * 14 13 11 28 28 H 1.08997 * 109.47285 * 300.00152 * 14 13 11 29 29 H 1.08997 * 109.47139 * 59.99772 * 15 14 13 30 30 H 1.09006 * 109.47243 * 300.00277 * 15 14 13 31 31 H 1.08996 * 112.84723 * 43.80771 * 16 15 14 32 32 H 1.08999 * 113.61181 * 25.43284 * 17 16 15 33 33 H 1.08998 * 113.61680 * 254.52836 * 17 16 15 34 34 H 1.09002 * 113.61445 * 89.11830 * 18 17 16 35 35 H 0.96696 * 114.00145 * 178.47219 * 19 18 17 36 36 H 1.08992 * 113.61675 * 140.02412 * 20 18 17 37 37 H 1.09000 * 113.60973 * 270.92699 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5285 -2.6363 0.0014 12 8 6.1350 -1.5860 0.0009 13 7 6.2025 -3.8035 0.0020 14 6 7.6675 -3.8035 0.0027 15 6 8.1776 -5.2459 0.0040 16 6 9.7076 -5.2459 0.0040 17 6 10.3237 -6.6494 0.1280 18 6 11.3700 -6.1955 -0.9035 19 8 11.7018 -7.2013 -1.8629 20 6 10.3248 -5.1856 -1.4062 21 1 -0.4851 0.8400 0.0004 22 1 3.8751 -0.6796 0.8895 23 1 3.8745 -0.6806 -0.8904 24 1 3.6580 -3.1511 -0.8880 25 1 3.6585 -3.1493 0.8920 26 1 5.7176 -4.6436 0.0021 27 1 8.0305 -3.2894 0.8927 28 1 8.0312 -3.2899 -0.8873 29 1 7.8146 -5.7604 -0.8857 30 1 7.8138 -5.7592 0.8942 31 1 10.1308 -4.5204 0.6986 32 1 9.6722 -7.4456 -0.2322 33 1 10.7427 -6.8569 1.1126 34 1 12.2487 -5.7292 -0.4579 35 1 12.3420 -6.9142 -2.5283 36 1 10.7447 -4.2122 -1.6593 37 1 9.6737 -5.5823 -2.1851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360490873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:02 Heat of formation + Delta-G solvation = -118.043381 kcal Electronic energy + Delta-G solvation = -16585.317983 eV Core-core repulsion = 13747.259318 eV Total energy + Delta-G solvation = -2838.058665 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79498 -40.19616 -36.79794 -35.63484 -35.43435 -33.36861 -31.50105 -28.15061 -26.66518 -25.44571 -23.10248 -22.49259 -21.17913 -20.38242 -19.20503 -18.36039 -17.50016 -16.99300 -16.82856 -16.27669 -16.17842 -15.66891 -15.30898 -14.83934 -14.56892 -14.49927 -13.92850 -13.41664 -13.36110 -13.24237 -12.91545 -12.63502 -12.41565 -12.12195 -11.96673 -11.91087 -11.76565 -11.62321 -11.40092 -11.12295 -10.81152 -10.78373 -10.58670 -10.05177 -8.31691 -6.34652 1.33262 1.35016 1.50392 1.69984 2.28939 2.35058 3.03918 3.34919 3.56714 3.66931 3.83705 4.00493 4.03109 4.17398 4.31669 4.41438 4.46317 4.50511 4.66611 4.72883 4.85530 4.88107 4.98281 5.00547 5.08452 5.18518 5.30261 5.33579 5.44999 5.52986 5.53710 5.61478 6.23445 6.61589 6.71884 6.91268 7.30795 7.33217 8.83989 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066355 B = 0.003268 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.873956 B = 8565.664895 C = 8763.860013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.004 3.996 10 C -0.117 4.117 11 C 0.512 3.488 12 O -0.589 6.589 13 N -0.721 5.721 14 C 0.119 3.881 15 C -0.107 4.107 16 C -0.104 4.104 17 C -0.124 4.124 18 C 0.073 3.927 19 O -0.582 6.582 20 C -0.168 4.168 21 H 0.267 0.733 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.416 0.584 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.393 0.607 36 H 0.071 0.929 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.016 -14.862 -0.939 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.034 4.034 10 C -0.157 4.157 11 C 0.300 3.700 12 O -0.470 6.470 13 N -0.374 5.374 14 C -0.004 4.004 15 C -0.145 4.145 16 C -0.123 4.123 17 C -0.162 4.162 18 C 0.014 3.986 19 O -0.390 6.390 20 C -0.205 4.205 21 H 0.076 0.924 22 H 0.028 0.972 23 H 0.026 0.974 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.253 0.747 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.895 -14.370 -0.587 27.889 hybrid contribution 0.019 0.962 -0.406 1.045 sum 23.915 -13.407 -0.993 27.434 Atomic orbital electron populations 1.70022 1.07780 1.28116 1.52526 1.25818 0.95514 1.02904 0.94273 0.85813 0.79208 0.79451 0.79147 1.19361 1.20301 1.18609 1.21442 0.91264 0.93737 1.50300 0.93136 1.19223 0.93915 0.93899 0.96322 1.21500 0.89326 0.99834 1.05058 1.21213 0.91052 0.83474 0.74281 1.90633 1.71462 1.33410 1.51456 1.45957 1.07661 1.08487 1.75253 1.21376 0.79202 0.98586 1.01261 1.21668 0.95071 0.93937 1.03789 1.22283 0.94153 0.97986 0.97842 1.23105 0.97202 0.96893 0.98974 1.23457 0.95987 0.88796 0.90346 1.86479 1.66922 1.41207 1.44423 1.23815 0.99292 1.00170 0.97263 0.92361 0.97220 0.97380 0.87949 0.87899 0.74687 0.92602 0.92935 0.90509 0.89720 0.88067 0.89789 0.89894 0.88668 0.75710 0.90995 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.94 47.15 27.47 68.60 1.88 49.03 16 4 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.26 -13.08 6.54 99.48 0.65 -12.43 16 7 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 8 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 9 C 0.00 0.22 3.33 29.85 0.10 0.32 16 10 C -0.12 -4.45 5.64 29.85 0.17 -4.29 16 11 C 0.51 18.26 7.83 87.66 0.69 18.94 16 12 O -0.59 -26.39 15.98 -3.04 -0.05 -26.44 16 13 N -0.72 -17.72 5.56 -463.07 -2.57 -20.29 16 14 C 0.12 2.54 5.66 86.38 0.49 3.03 16 15 C -0.11 -1.48 5.17 30.59 0.16 -1.32 16 16 C -0.10 -1.29 3.66 -10.18 -0.04 -1.33 16 17 C -0.12 -1.51 7.47 31.12 0.23 -1.28 16 18 C 0.07 0.87 5.20 31.12 0.16 1.03 16 19 O -0.58 -8.17 13.67 -148.98 -2.04 -10.21 16 20 C -0.17 -2.17 7.48 31.21 0.23 -1.94 16 21 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 22 H 0.01 0.50 7.15 -2.39 -0.02 0.48 16 23 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 24 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 25 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 26 H 0.42 7.38 8.47 -92.71 -0.79 6.60 16 27 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.02 7.85 -2.39 -0.02 1.00 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.10 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.39 2.27 9.12 -74.06 -0.68 1.59 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 1.21 7.90 -2.39 -0.02 1.19 16 Total: -1.00 -75.96 309.65 -0.03 -75.99 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -0.46 Total: 7.25 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 2.90 Total: -16.17 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.27 Total: -79.45 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -2.09 Total: -36.65 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.88 Total: 49.03 kcal Total: -75.96 -0.03 -75.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360490873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.050 kcal (2) G-P(sol) polarization free energy of solvation -75.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds