Wall clock time and date at job start Thu Apr 9 2020 12:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47080 * 270.00225 * 3 2 1 5 5 H 1.48502 * 109.47028 * 30.00513 * 3 2 1 6 6 H 1.48500 * 109.47206 * 150.00012 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99662 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00063 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00030 * 189.99975 * 10 9 7 12 12 C 1.52998 * 109.47304 * 76.25235 * 11 10 9 13 13 C 1.52991 * 109.47725 * 181.72903 * 12 11 10 14 14 C 1.50700 * 109.47485 * 180.02562 * 13 12 11 15 15 O 1.20818 * 120.00160 * 359.97438 * 14 13 12 16 16 O 1.34228 * 119.99822 * 180.02562 * 14 13 12 17 17 C 1.46904 * 110.99850 * 66.05117 * 10 9 7 18 18 C 1.52999 * 109.47009 * 200.52811 * 17 10 9 19 19 C 1.53001 * 117.49779 * 244.79214 * 18 17 10 20 20 C 1.52994 * 60.00244 * 252.50889 * 19 18 17 21 21 H 0.97003 * 119.99668 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47343 * 60.00474 * 9 7 2 23 23 H 1.09001 * 109.47297 * 300.00190 * 9 7 2 24 24 H 1.09000 * 109.47425 * 196.24764 * 11 10 9 25 25 H 1.08994 * 109.47411 * 316.24938 * 11 10 9 26 26 H 1.09004 * 109.46787 * 301.72945 * 12 11 10 27 27 H 1.09002 * 109.47347 * 61.72053 * 12 11 10 28 28 H 1.09004 * 109.47023 * 299.99897 * 13 12 11 29 29 H 1.09010 * 109.47145 * 59.99783 * 13 12 11 30 30 H 0.96699 * 116.99618 * 179.97438 * 16 14 13 31 31 H 1.09002 * 109.46755 * 320.52194 * 17 10 9 32 32 H 1.08997 * 109.47321 * 80.52654 * 17 10 9 33 33 H 1.09002 * 115.55016 * 30.49917 * 18 17 10 34 34 H 1.09004 * 117.49902 * 0.02562 * 19 18 17 35 35 H 1.09006 * 117.49761 * 145.01723 * 19 18 17 36 36 H 1.08997 * 117.49836 * 252.51280 * 20 19 18 37 37 H 1.08998 * 117.49995 * 107.48449 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4501 -2.6251 0.2366 12 6 5.7317 -2.3799 1.7203 13 6 7.2426 -2.3850 1.9604 14 6 7.5199 -2.1441 3.4219 15 8 6.6032 -1.9841 4.1924 16 8 8.7855 -2.1062 3.8675 17 6 3.6513 -3.2612 -1.2541 18 6 3.6999 -4.7755 -1.0412 19 6 4.7535 -5.5650 -1.8205 20 6 3.2777 -5.6673 -2.2106 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6805 0.8889 23 1 3.8745 -0.6799 -0.8911 24 1 5.8342 -3.6044 -0.0490 25 1 5.9406 -1.8549 -0.3585 26 1 5.3206 -1.4138 2.0133 27 1 5.2668 -3.1674 2.3134 28 1 7.6538 -3.3511 1.6674 29 1 7.7075 -1.5974 1.3673 30 1 8.9135 -1.9484 4.8129 31 1 2.6461 -2.9691 -1.5583 32 1 4.3621 -2.9806 -2.0313 33 1 3.4572 -5.1167 -0.0348 34 1 5.4124 -5.0055 -2.4846 35 1 5.2045 -6.4259 -1.3267 36 1 2.7576 -6.5954 -1.9735 37 1 2.9653 -5.1751 -3.1315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389864824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:24 Heat of formation + Delta-G solvation = -74.017748 kcal Electronic energy + Delta-G solvation = -17364.269471 eV Core-core repulsion = 14528.119901 eV Total energy + Delta-G solvation = -2836.149571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23074 -38.01363 -36.31338 -35.80156 -33.33352 -32.16426 -28.23187 -27.56447 -24.56067 -22.50567 -22.03695 -20.89350 -20.14232 -19.66070 -18.04011 -16.97164 -16.38446 -16.21744 -15.47203 -14.94060 -14.11730 -14.04550 -13.94412 -13.66460 -13.10514 -12.58360 -12.32331 -12.04829 -11.82670 -11.56017 -11.50361 -11.29756 -11.13677 -10.92455 -10.67819 -10.59695 -10.51733 -10.26080 -9.81127 -9.73772 -9.49227 -9.17597 -8.55229 -7.39569 -6.03110 -3.99934 2.21861 3.01760 3.28980 3.37266 3.39283 4.12949 4.43723 4.59338 4.97865 5.06974 5.13344 5.26278 5.27780 5.29905 5.44873 5.60265 5.74768 5.78379 5.82377 5.89150 5.99769 6.11066 6.26989 6.33538 6.40021 6.43485 6.49070 6.68291 6.78620 6.89906 6.99178 7.64620 7.87411 7.94087 8.08127 8.68090 9.06525 9.58902 11.10026 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.008131 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.884614 B = 3442.978814 C = 5278.402727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.160 3.840 10 N -0.524 5.524 11 C 0.056 3.944 12 C -0.106 4.106 13 C -0.111 4.111 14 C 0.475 3.525 15 O -0.508 6.508 16 O -0.524 6.524 17 C 0.090 3.910 18 C -0.131 4.131 19 C -0.193 4.193 20 C -0.183 4.183 21 H 0.263 0.737 22 H 0.032 0.968 23 H -0.018 1.018 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.406 0.594 31 H 0.096 0.904 32 H 0.021 0.979 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.964 -7.093 0.431 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.100 0.900 9 C 0.034 3.966 10 N -0.248 5.248 11 C -0.073 4.073 12 C -0.144 4.144 13 C -0.149 4.149 14 C 0.317 3.683 15 O -0.395 6.395 16 O -0.336 6.336 17 C -0.038 4.038 18 C -0.149 4.149 19 C -0.230 4.230 20 C -0.220 4.220 21 H 0.073 0.927 22 H 0.050 0.950 23 H 0.000 1.000 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.265 0.735 31 H 0.114 0.886 32 H 0.040 0.960 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.243 -7.228 0.606 16.881 hybrid contribution 0.901 1.494 0.002 1.744 sum 16.143 -5.734 0.609 17.142 Atomic orbital electron populations 1.69894 1.06097 1.26767 1.51128 1.24894 0.94713 0.98770 0.94910 0.86897 0.80468 0.84236 0.78360 1.20422 1.21155 1.19181 1.21053 0.88757 0.94738 1.50133 0.89985 1.20239 0.97104 0.84194 0.95065 1.61788 1.10210 1.18792 1.33989 1.22035 0.90567 1.00020 0.94680 1.21438 0.90844 1.04665 0.97419 1.21401 1.00225 1.05008 0.88268 1.23715 0.79711 0.72318 0.92563 1.90762 1.45630 1.44959 1.58183 1.84549 1.31361 1.84559 1.33143 1.21619 1.02083 0.90155 0.89935 1.22427 1.01823 0.93971 0.96716 1.23024 0.92121 1.03168 1.04682 1.22890 0.97168 1.01857 1.00094 0.92704 0.95046 1.00008 0.91442 0.95679 0.90619 0.90274 0.87831 0.87962 0.73541 0.88600 0.96048 0.87241 0.89475 0.89540 0.89230 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.40 8.78 -34.44 -0.30 -14.70 16 8 H 0.08 2.53 7.57 -52.49 -0.40 2.13 16 9 C 0.16 3.85 3.61 -4.98 -0.02 3.83 16 10 N -0.52 -10.64 4.35 -236.08 -1.03 -11.67 16 11 C 0.06 0.89 4.81 -3.83 -0.02 0.87 16 12 C -0.11 -1.63 4.64 -26.74 -0.12 -1.75 16 13 C -0.11 -1.26 5.81 -27.89 -0.16 -1.42 16 14 C 0.47 6.01 8.33 36.01 0.30 6.31 16 15 O -0.51 -8.50 16.74 -18.74 -0.31 -8.81 16 16 O -0.52 -5.00 13.42 -39.25 -0.53 -5.53 16 17 C 0.09 1.68 5.06 -3.82 -0.02 1.66 16 18 C -0.13 -2.05 5.22 -90.62 -0.47 -2.52 16 19 C -0.19 -2.45 10.04 -26.73 -0.27 -2.72 16 20 C -0.18 -2.47 10.25 -26.73 -0.27 -2.74 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.03 0.78 5.69 -51.93 -0.30 0.48 16 23 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 24 H 0.07 0.94 7.21 -51.93 -0.37 0.57 16 25 H 0.03 0.39 7.99 -51.93 -0.42 -0.02 16 26 H 0.08 1.37 6.73 -51.93 -0.35 1.02 16 27 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.41 2.24 9.10 45.56 0.41 2.66 16 31 H 0.10 2.07 6.58 -51.93 -0.34 1.73 16 32 H 0.02 0.37 7.72 -51.93 -0.40 -0.03 16 33 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -32.89 308.15 -7.67 -40.56 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.09 Total: 1.97 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.46 Total: -11.28 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.25 Total: -38.56 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.84 Total: -14.34 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.89 -7.67 -40.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389864824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.455 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds