Wall clock time and date at job start Thu Apr 9 2020 12:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47080 * 270.00225 * 3 2 1 5 5 H 1.48502 * 109.47028 * 30.00513 * 3 2 1 6 6 H 1.48500 * 109.47206 * 150.00012 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99662 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00063 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00030 * 189.99975 * 10 9 7 12 12 C 1.52998 * 109.47304 * 76.25235 * 11 10 9 13 13 C 1.52991 * 109.47725 * 181.72903 * 12 11 10 14 14 C 1.50700 * 109.47485 * 180.02562 * 13 12 11 15 15 O 1.20818 * 120.00160 * 359.97438 * 14 13 12 16 16 O 1.34228 * 119.99822 * 180.02562 * 14 13 12 17 17 C 1.46904 * 110.99850 * 66.05117 * 10 9 7 18 18 C 1.52999 * 109.47009 * 200.52811 * 17 10 9 19 19 C 1.53001 * 117.49779 * 244.79214 * 18 17 10 20 20 C 1.52994 * 60.00244 * 252.50889 * 19 18 17 21 21 H 0.97003 * 119.99668 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47343 * 60.00474 * 9 7 2 23 23 H 1.09001 * 109.47297 * 300.00190 * 9 7 2 24 24 H 1.09000 * 109.47425 * 196.24764 * 11 10 9 25 25 H 1.08994 * 109.47411 * 316.24938 * 11 10 9 26 26 H 1.09004 * 109.46787 * 301.72945 * 12 11 10 27 27 H 1.09002 * 109.47347 * 61.72053 * 12 11 10 28 28 H 1.09004 * 109.47023 * 299.99897 * 13 12 11 29 29 H 1.09010 * 109.47145 * 59.99783 * 13 12 11 30 30 H 0.96699 * 116.99618 * 179.97438 * 16 14 13 31 31 H 1.09002 * 109.46755 * 320.52194 * 17 10 9 32 32 H 1.08997 * 109.47321 * 80.52654 * 17 10 9 33 33 H 1.09002 * 115.55016 * 30.49917 * 18 17 10 34 34 H 1.09004 * 117.49902 * 0.02562 * 19 18 17 35 35 H 1.09006 * 117.49761 * 145.01723 * 19 18 17 36 36 H 1.08997 * 117.49836 * 252.51280 * 20 19 18 37 37 H 1.08998 * 117.49995 * 107.48449 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4501 -2.6251 0.2366 12 6 5.7317 -2.3799 1.7203 13 6 7.2426 -2.3850 1.9604 14 6 7.5199 -2.1441 3.4219 15 8 6.6032 -1.9841 4.1924 16 8 8.7855 -2.1062 3.8675 17 6 3.6513 -3.2612 -1.2541 18 6 3.6999 -4.7755 -1.0412 19 6 4.7535 -5.5650 -1.8205 20 6 3.2777 -5.6673 -2.2106 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6805 0.8889 23 1 3.8745 -0.6799 -0.8911 24 1 5.8342 -3.6044 -0.0490 25 1 5.9406 -1.8549 -0.3585 26 1 5.3206 -1.4138 2.0133 27 1 5.2668 -3.1674 2.3134 28 1 7.6538 -3.3511 1.6674 29 1 7.7075 -1.5974 1.3673 30 1 8.9135 -1.9484 4.8129 31 1 2.6461 -2.9691 -1.5583 32 1 4.3621 -2.9806 -2.0313 33 1 3.4572 -5.1167 -0.0348 34 1 5.4124 -5.0055 -2.4846 35 1 5.2045 -6.4259 -1.3267 36 1 2.7576 -6.5954 -1.9735 37 1 2.9653 -5.1751 -3.1315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389864824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:24 Heat of formation + Delta-G solvation = -97.500577 kcal Electronic energy + Delta-G solvation = -17365.287763 eV Core-core repulsion = 14528.119901 eV Total energy + Delta-G solvation = -2837.167863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.21175 -39.39824 -37.33581 -36.98961 -34.97774 -33.93643 -30.11009 -28.81894 -26.10005 -23.98630 -23.09895 -22.21663 -21.35530 -21.06350 -19.09985 -18.91589 -17.46919 -17.28134 -16.81107 -16.50798 -15.79679 -15.41282 -15.35306 -14.94013 -14.50459 -14.10616 -13.87728 -13.62041 -13.22491 -12.75044 -12.66170 -12.52345 -12.49965 -12.38192 -12.26171 -11.93713 -11.81899 -11.60569 -11.53600 -11.45334 -10.99405 -10.79369 -10.62682 -8.97786 -8.28134 -6.30313 1.26558 1.31344 1.34744 1.44857 2.17477 2.33498 2.97714 3.04728 3.24756 3.91116 4.03702 4.06379 4.16140 4.21839 4.27743 4.45103 4.58725 4.67712 4.71618 4.75391 4.81494 4.84195 4.94028 5.02637 5.09228 5.15982 5.24827 5.34183 5.36894 5.46980 5.58802 5.67890 6.04171 6.45684 6.71571 6.76894 7.04231 7.32846 8.88697 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.008131 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.884614 B = 3442.978814 C = 5278.402727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.513 4.513 8 H 0.037 0.963 9 C 0.172 3.828 10 N -0.544 5.544 11 C 0.059 3.941 12 C -0.101 4.101 13 C -0.103 4.103 14 C 0.481 3.519 15 O -0.560 6.560 16 O -0.512 6.512 17 C 0.097 3.903 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.182 4.182 21 H 0.266 0.734 22 H 0.027 0.973 23 H -0.014 1.014 24 H 0.096 0.904 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.425 0.575 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.530 -7.406 -0.335 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.045 3.955 10 N -0.268 5.268 11 C -0.069 4.069 12 C -0.139 4.139 13 C -0.140 4.140 14 C 0.325 3.675 15 O -0.451 6.451 16 O -0.325 6.325 17 C -0.031 4.031 18 C -0.175 4.175 19 C -0.197 4.197 20 C -0.220 4.220 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.004 0.996 24 H 0.114 0.886 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.286 0.714 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.861 -7.565 -0.159 20.323 hybrid contribution -0.215 1.475 0.261 1.513 sum 18.646 -6.091 0.102 19.616 Atomic orbital electron populations 1.70054 1.08081 1.27977 1.52828 1.25837 0.95591 1.03045 0.94548 0.85767 0.79454 0.78879 0.79187 1.18905 1.20823 1.17549 1.21301 0.91310 0.93145 1.49421 0.94443 1.19943 0.94046 0.86777 0.94741 1.61689 1.13510 1.16468 1.35150 1.22124 0.87644 1.02029 0.95111 1.21297 0.93952 1.01966 0.96678 1.21354 0.97078 1.07774 0.87838 1.23928 0.79828 0.70918 0.92787 1.90760 1.47260 1.47545 1.59542 1.84498 1.29350 1.83720 1.34927 1.21484 0.99826 0.92157 0.89657 1.22177 1.06120 0.92221 0.96977 1.23107 0.91378 1.02471 1.02708 1.22994 0.98687 1.01524 0.98791 0.92520 0.95474 0.99603 0.88591 0.94374 0.94051 0.92196 0.84425 0.85571 0.71378 0.93118 0.94547 0.88755 0.88202 0.87315 0.88011 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 2 C 0.01 0.41 5.47 84.66 0.46 0.87 16 3 Si 0.94 45.13 27.47 68.60 1.88 47.01 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 7 C -0.51 -30.40 8.78 25.60 0.22 -30.17 16 8 H 0.04 2.48 7.57 -2.91 -0.02 2.46 16 9 C 0.17 8.36 3.61 85.56 0.31 8.67 16 10 N -0.54 -22.20 4.35 -900.81 -3.92 -26.12 16 11 C 0.06 1.75 4.81 86.30 0.41 2.17 16 12 C -0.10 -2.99 4.64 30.59 0.14 -2.85 16 13 C -0.10 -2.00 5.81 29.84 0.17 -1.82 16 14 C 0.48 11.17 8.33 71.24 0.59 11.76 16 15 O -0.56 -18.55 16.74 21.99 0.37 -18.18 16 16 O -0.51 -8.18 13.42 -51.40 -0.69 -8.87 16 17 C 0.10 3.63 5.06 86.30 0.44 4.07 16 18 C -0.16 -4.78 5.22 -10.79 -0.06 -4.83 16 19 C -0.16 -3.50 10.04 30.59 0.31 -3.20 16 20 C -0.18 -4.64 10.25 30.59 0.31 -4.33 16 21 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 22 H 0.03 1.35 5.69 -2.39 -0.01 1.33 16 23 H -0.01 -0.65 7.55 -2.39 -0.02 -0.66 16 24 H 0.10 2.34 7.21 -2.39 -0.02 2.32 16 25 H 0.04 1.07 7.99 -2.39 -0.02 1.05 16 26 H 0.04 1.50 6.73 -2.39 -0.02 1.48 16 27 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 28 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.42 3.54 9.10 -74.06 -0.67 2.86 16 31 H 0.05 2.32 6.58 -2.39 -0.02 2.31 16 32 H 0.04 1.23 7.72 -2.39 -0.02 1.21 16 33 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.10 1.99 8.03 -2.39 -0.02 1.97 16 35 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -75.54 308.15 1.59 -73.95 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.32 Total: 12.19 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.32 Total: -19.67 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -3.62 Total: -86.44 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.32 Total: -27.05 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -75.54 1.59 -73.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389864824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.548 kcal (2) G-P(sol) polarization free energy of solvation -75.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds