Wall clock time and date at job start Thu Apr 9 2020 12:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48501 * 109.47287 * 240.00460 * 3 2 1 5 5 H 1.48509 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47115 * 119.99916 * 3 2 1 7 7 C 1.40048 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99921 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00110 * 5.58990 * 9 7 2 11 11 N 1.34779 * 119.99553 * 185.59755 * 9 7 2 12 12 C 1.46934 * 120.62601 * 174.74174 * 11 9 7 13 13 C 1.53191 * 108.89273 * 233.55707 * 12 11 9 14 14 C 1.53072 * 109.29477 * 305.58196 * 13 12 11 15 15 N 1.46505 * 109.44195 * 181.23664 * 14 13 12 16 16 C 1.34782 * 119.99929 * 84.79457 * 15 14 13 17 17 N 1.34770 * 119.99887 * 180.02562 * 16 15 14 18 18 O 1.21582 * 120.00086 * 359.97438 * 16 15 14 19 19 C 1.53035 * 109.66350 * 61.15261 * 14 13 12 20 20 C 1.46926 * 120.63701 * 354.76363 * 11 9 7 21 21 H 0.96993 * 120.00281 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.58501 * 353.41860 * 12 11 9 23 23 H 1.08999 * 109.58181 * 113.69896 * 12 11 9 24 24 H 1.08997 * 109.50052 * 65.38921 * 13 12 11 25 25 H 1.08999 * 109.49430 * 185.48670 * 13 12 11 26 26 H 1.09002 * 109.35076 * 301.12805 * 14 13 12 27 27 H 0.96995 * 120.00233 * 264.79691 * 15 14 13 28 28 H 0.97006 * 120.00424 * 359.97438 * 17 16 15 29 29 H 0.96996 * 120.00301 * 180.02562 * 17 16 15 30 30 H 1.08997 * 109.50163 * 178.74474 * 19 14 13 31 31 H 1.09002 * 109.52115 * 58.66496 * 19 14 13 32 32 H 1.08991 * 109.58898 * 246.16183 * 20 11 9 33 33 H 1.09002 * 109.58153 * 6.44258 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0628 -2.4831 -0.1026 11 7 1.9444 -3.6448 0.1149 12 6 1.2185 -4.9169 0.2321 13 6 1.7158 -5.6590 1.4766 14 6 3.2379 -5.8047 1.4041 15 7 3.7138 -6.5399 2.5785 16 6 3.7099 -7.8877 2.5770 17 7 4.1473 -8.5641 3.6575 18 8 3.3110 -8.4934 1.6011 19 6 3.8868 -4.4191 1.3726 20 6 3.4135 -3.6662 0.1253 21 1 -0.4850 0.8400 0.0004 22 1 0.1505 -4.7209 0.3259 23 1 1.4019 -5.5251 -0.6537 24 1 1.4486 -5.0928 2.3688 25 1 1.2552 -6.6459 1.5199 26 1 3.5057 -6.3517 0.5002 27 1 4.0317 -6.0568 3.3572 28 1 4.4652 -8.0809 4.4363 29 1 4.1448 -9.5340 3.6563 30 1 4.9712 -4.5258 1.3436 31 1 3.5999 -3.8621 2.2646 32 1 3.7779 -4.1734 -0.7679 33 1 3.7935 -2.6448 0.1462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396953022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:32 Heat of formation + Delta-G solvation = -103.353769 kcal Electronic energy + Delta-G solvation = -17572.144989 eV Core-core repulsion = 14631.182970 eV Total energy + Delta-G solvation = -2940.962019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14135 -39.97716 -37.81456 -35.34996 -34.65920 -34.44090 -32.18260 -31.39568 -28.38172 -25.56115 -24.18914 -22.46143 -21.88404 -20.70290 -19.19608 -18.56823 -18.09950 -17.62406 -16.33915 -16.24678 -15.99728 -15.74317 -15.51759 -15.19319 -14.80837 -14.49256 -14.20421 -13.50754 -13.34079 -13.02660 -12.75653 -12.63173 -12.42586 -12.15904 -11.98070 -11.79319 -11.52208 -11.37611 -10.88575 -10.67962 -9.97025 -9.73991 -9.10457 -8.25877 -6.80850 1.43163 1.46705 1.58134 1.95944 2.21005 2.26474 2.49819 2.85049 3.59642 3.67297 3.80334 3.92220 4.20645 4.24286 4.38994 4.57457 4.71208 4.87255 4.93701 4.93885 5.00787 5.10654 5.36200 5.42953 5.55451 5.79642 5.95523 6.07573 6.17681 6.40787 6.91003 7.15679 7.45675 7.70272 8.49680 8.70522 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.046429 B = 0.005451 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.927560 B = 5135.544881 C = 5475.097113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.249 1.249 7 C -0.567 4.567 8 H 0.100 0.900 9 C 0.539 3.461 10 O -0.636 6.636 11 N -0.645 5.645 12 C 0.122 3.878 13 C -0.125 4.125 14 C 0.175 3.825 15 N -0.726 5.726 16 C 0.698 3.302 17 N -0.847 5.847 18 O -0.647 6.647 19 C -0.125 4.125 20 C 0.117 3.883 21 H 0.273 0.727 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.412 0.588 28 H 0.414 0.586 29 H 0.420 0.580 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.948 -9.220 9.134 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.173 1.173 7 C -0.603 4.603 8 H 0.118 0.882 9 C 0.346 3.654 10 O -0.524 6.524 11 N -0.381 5.381 12 C -0.002 4.002 13 C -0.165 4.165 14 C 0.069 3.931 15 N -0.382 5.382 16 C 0.396 3.604 17 N -0.417 5.417 18 O -0.529 6.529 19 C -0.164 4.164 20 C -0.006 4.006 21 H 0.083 0.917 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.249 0.751 28 H 0.245 0.755 29 H 0.253 0.747 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.789 -9.501 8.214 17.925 hybrid contribution -0.120 0.544 0.538 0.775 sum 12.669 -8.958 8.753 17.815 Atomic orbital electron populations 1.70200 1.09709 1.28913 1.36709 1.27026 0.95439 1.05048 0.91182 0.85090 0.78192 0.74677 0.80473 1.17810 1.20426 1.17302 1.21492 0.94964 0.89470 1.54374 0.88233 1.18736 0.86542 0.84241 0.75904 1.90541 1.16982 1.87434 1.57398 1.48097 1.06718 1.05233 1.78070 1.21110 0.96720 0.85314 0.97064 1.22148 0.97196 0.99452 0.97739 1.20597 0.91976 0.92253 0.88318 1.45017 1.69143 1.04140 1.19897 1.16245 0.78191 0.82353 0.83610 1.42766 1.70687 1.11168 1.17036 1.90941 1.56343 1.69104 1.36509 1.22111 1.01680 0.93396 0.99186 1.21635 0.79659 1.02135 0.97175 0.91725 0.93209 0.92849 0.92500 0.91638 0.90747 0.75111 0.75486 0.74734 0.87452 0.91074 0.92076 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.62 11.84 21.84 0.26 -50.37 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 39.82 29.56 68.60 2.03 41.85 16 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.57 -31.26 8.88 24.83 0.22 -31.04 16 8 H 0.10 4.76 5.64 -2.91 -0.02 4.74 16 9 C 0.54 31.49 7.61 86.36 0.66 32.15 16 10 O -0.64 -43.53 14.48 -4.30 -0.06 -43.59 16 11 N -0.64 -29.47 2.97 -823.99 -2.45 -31.92 16 12 C 0.12 5.14 6.41 86.36 0.55 5.69 16 13 C -0.13 -4.23 5.66 30.68 0.17 -4.06 16 14 C 0.17 4.79 2.41 45.03 0.11 4.90 16 15 N -0.73 -15.19 5.08 -457.63 -2.33 -17.51 16 16 C 0.70 16.71 8.80 179.05 1.58 18.29 16 17 N -0.85 -11.10 8.88 -184.75 -1.64 -12.74 16 18 O -0.65 -22.51 16.84 -3.97 -0.07 -22.58 16 19 C -0.12 -3.17 5.55 30.67 0.17 -3.00 16 20 C 0.12 4.00 6.35 86.36 0.55 4.55 16 21 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 22 H 0.05 2.42 7.04 -2.39 -0.02 2.41 16 23 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.07 2.29 7.58 -2.39 -0.02 2.27 16 27 H 0.41 5.73 8.62 -92.71 -0.80 4.94 16 28 H 0.41 2.42 8.84 -92.70 -0.82 1.60 16 29 H 0.42 4.72 8.93 -92.71 -0.83 3.89 16 30 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 3.30 5.30 -2.39 -0.01 3.28 16 Total: -1.00 -84.33 277.24 -1.06 -85.39 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -1.28 Total: 21.99 kcal Atomic # 6 Polarization: 24.99 SS G_CDS: 4.48 Total: 29.47 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -6.16 Total: -112.54 kcal Atomic # 8 Polarization: -66.04 SS G_CDS: -0.13 Total: -66.17 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -84.33 -1.06 -85.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396953022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.963 kcal (2) G-P(sol) polarization free energy of solvation -84.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds