Wall clock time and date at job start Thu Apr 9 2020 12:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.91914 * 2 1 4 4 C 1.55129 * 110.85626 * 123.61172 * 2 1 3 5 5 C 1.53861 * 106.90007 * 160.29045 * 4 2 1 6 6 H 1.09002 * 109.60640 * 72.48560 * 5 4 2 7 7 N 1.46895 * 109.61189 * 192.82410 * 5 4 2 8 8 C 1.46901 * 111.00051 * 207.93221 * 7 5 4 9 9 C 1.53001 * 109.47030 * 174.69365 * 8 7 5 10 10 C 1.50702 * 115.55552 * 65.30106 * 9 8 7 11 11 H 1.07993 * 119.99780 * 265.49780 * 10 9 8 12 12 C 1.37873 * 119.99669 * 85.49338 * 10 9 8 13 13 N 1.31510 * 120.00044 * 184.52358 * 12 10 9 14 14 Si 1.86806 * 120.00133 * 4.52282 * 12 10 9 15 15 H 1.48504 * 109.46830 * 94.36527 * 14 12 10 16 16 H 1.48503 * 109.46964 * 214.36009 * 14 12 10 17 17 H 1.48491 * 109.47225 * 334.36380 * 14 12 10 18 18 C 1.53004 * 117.49705 * 279.62906 * 9 8 7 19 19 C 1.53004 * 117.49519 * 210.97409 * 9 8 7 20 20 C 1.54278 * 108.92466 * 312.74522 * 5 4 2 21 21 S 1.83093 * 104.65057 * 27.94992 * 20 5 4 22 22 H 1.09006 * 109.46784 * 296.39221 * 1 2 3 23 23 H 1.09004 * 109.47028 * 56.38781 * 1 2 3 24 24 H 1.08993 * 109.47348 * 176.38894 * 1 2 3 25 25 H 1.09004 * 109.97535 * 40.93545 * 4 2 1 26 26 H 1.09002 * 110.00978 * 279.66925 * 4 2 1 27 27 H 1.00904 * 110.99875 * 83.97607 * 7 5 4 28 28 H 1.09002 * 109.46680 * 294.68836 * 8 7 5 29 29 H 1.08997 * 109.47272 * 54.69045 * 8 7 5 30 30 H 0.96999 * 120.00757 * 180.02562 * 13 12 10 31 31 H 1.08998 * 117.49628 * 0.02562 * 18 9 8 32 32 H 1.08997 * 117.49869 * 145.02008 * 18 9 8 33 33 H 1.09002 * 117.49523 * 214.97633 * 19 9 8 34 34 H 1.08995 * 117.50037 * 359.97438 * 19 9 8 35 35 H 1.09002 * 110.39713 * 146.74646 * 20 5 4 36 36 H 1.09000 * 110.39862 * 269.15681 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0823 -0.8025 1.2073 5 6 3.5367 -1.1742 0.8696 6 1 4.1648 -0.2854 0.9298 7 7 4.0205 -2.1849 1.8194 8 6 5.4770 -2.0947 1.9877 9 6 5.9258 -3.0697 3.0781 10 6 5.7309 -4.5307 2.7643 11 1 4.8382 -5.0398 3.0962 12 6 6.6922 -5.2172 2.0533 13 7 6.4830 -6.4673 1.7024 14 14 8.2918 -4.3718 1.5884 15 1 9.3247 -4.6691 2.6132 16 1 8.7487 -4.8698 0.2661 17 1 8.0736 -2.9048 1.5165 18 6 5.7521 -2.6305 4.5334 19 6 7.1496 -2.6832 3.9111 20 6 3.5878 -1.7438 -0.5633 21 16 2.1831 -0.9490 -1.4279 22 1 -0.3633 0.4568 0.9206 23 1 -0.3633 0.5689 -0.8559 24 1 -0.3633 -1.0255 -0.0647 25 1 1.4917 -1.7066 1.3550 26 1 2.0544 -0.1885 2.1075 27 1 3.7464 -3.1123 1.5314 28 1 5.9677 -2.3495 1.0482 29 1 5.7474 -1.0787 2.2750 30 1 7.1594 -6.9505 1.2025 31 1 5.3178 -1.6472 4.7139 32 1 5.4972 -3.3983 5.2638 33 1 7.8135 -3.4858 4.2324 34 1 7.6353 -1.7347 3.6820 35 1 4.5293 -1.4784 -1.0442 36 1 3.4604 -2.8262 -0.5466 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397907591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:45 Heat of formation + Delta-G solvation = 15.238678 kcal Electronic energy + Delta-G solvation = -15604.033762 eV Core-core repulsion = 13214.507511 eV Total energy + Delta-G solvation = -2389.526251 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -37.96498 -36.49085 -33.58601 -32.11104 -30.06304 -26.61765 -25.97789 -24.43510 -22.00640 -21.53766 -20.51965 -18.92953 -16.71301 -16.20865 -15.47315 -14.95511 -14.90238 -14.52855 -13.70356 -13.59352 -13.23249 -12.75077 -12.64634 -12.50096 -12.27123 -11.95587 -11.58200 -11.28327 -11.22171 -11.03693 -10.84096 -10.72400 -10.42409 -10.06952 -9.88246 -9.47537 -9.03585 -8.65569 -8.42695 -7.81831 -7.62454 -6.13974 -4.16740 1.86086 2.45615 3.25833 3.36127 3.40961 4.31037 4.39641 4.66758 4.86553 4.91006 5.08949 5.13624 5.17400 5.33717 5.34959 5.56475 5.61090 5.70209 5.78527 5.83151 5.97885 6.06601 6.12170 6.16901 6.19150 6.36152 6.46324 6.52997 6.78401 7.06053 7.17423 7.62454 7.74361 7.97530 8.50139 8.91185 9.50155 10.97502 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.006484 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.830898 B = 4317.279842 C = 4703.249932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.042 4.042 3 H 0.093 0.907 4 C -0.111 4.111 5 C 0.081 3.919 6 H 0.080 0.920 7 N -0.664 5.664 8 C 0.099 3.901 9 C 0.007 3.993 10 C -0.487 4.487 11 H 0.078 0.922 12 C 0.077 3.923 13 N -0.897 5.897 14 Si 0.877 3.123 15 H -0.280 1.280 16 H -0.296 1.296 17 H -0.257 1.257 18 C -0.169 4.169 19 C -0.205 4.205 20 C -0.098 4.098 21 S -0.306 6.306 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.358 0.642 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 12.752 -2.285 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.171 4.171 3 H 0.112 0.888 4 C -0.150 4.150 5 C -0.031 4.031 6 H 0.098 0.902 7 N -0.296 5.296 8 C -0.030 4.030 9 C 0.006 3.994 10 C -0.524 4.524 11 H 0.096 0.904 12 C -0.126 4.126 13 N -0.534 5.534 14 Si 0.705 3.295 15 H -0.206 1.206 16 H -0.223 1.223 17 H -0.181 1.181 18 C -0.206 4.206 19 C -0.243 4.243 20 C -0.248 4.248 21 S -0.081 6.081 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.179 0.821 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.553 12.869 -2.954 15.211 hybrid contribution 1.871 -0.032 -0.060 1.873 sum -5.682 12.836 -3.015 14.357 Atomic orbital electron populations 1.21679 0.92082 1.03175 1.02041 1.23958 0.98920 1.00425 0.93807 0.88830 1.22556 0.95153 1.00480 0.96788 1.22424 0.96475 0.96664 0.87538 0.90168 1.60459 1.13667 1.08549 1.46929 1.21678 0.86274 0.97101 0.97936 1.19328 0.96336 0.95387 0.88392 1.20306 1.06666 0.90361 1.35098 0.90355 1.24997 0.98239 0.94545 0.94795 1.69902 1.34892 1.10055 1.38593 0.86880 0.84257 0.81065 0.77309 1.20629 1.22304 1.18083 1.22701 0.98636 1.00483 0.98778 1.22989 0.91802 1.00873 1.08612 1.24954 0.97804 1.03454 0.98593 1.87456 1.38377 1.60106 1.22162 0.91372 0.92235 0.91350 0.89861 0.89612 0.82088 0.95555 0.93577 0.92625 0.90970 0.89949 0.89756 0.91269 0.89104 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.38 37.16 0.35 -0.89 16 2 C -0.04 -0.47 3.84 -25.60 -0.10 -0.57 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.36 5.52 -25.16 -0.14 -1.50 16 5 C 0.08 1.17 2.90 -66.60 -0.19 0.98 16 6 H 0.08 1.14 7.67 -51.93 -0.40 0.74 16 7 N -0.66 -11.65 6.25 -105.55 -0.66 -12.31 16 8 C 0.10 1.95 5.04 -3.82 -0.02 1.93 16 9 C 0.01 0.15 0.99 -155.65 -0.15 0.00 16 10 C -0.49 -12.94 8.93 -34.44 -0.31 -13.25 16 11 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 12 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 14 Si 0.88 21.21 24.92 -169.99 -4.24 16.97 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.26 -5.85 5.73 56.52 0.32 -5.53 16 18 C -0.17 -3.41 9.96 -26.69 -0.27 -3.68 16 19 C -0.20 -4.30 7.29 -26.69 -0.19 -4.50 16 20 C -0.10 -1.44 6.92 37.83 0.26 -1.18 16 21 S -0.31 -4.28 22.73 -107.50 -2.44 -6.72 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.36 6.86 7.66 -39.29 -0.30 6.55 16 28 H 0.03 0.55 7.14 -51.93 -0.37 0.18 16 29 H 0.05 0.84 7.87 -51.93 -0.41 0.43 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.08 1.86 7.07 -51.93 -0.37 1.50 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.10 1.56 7.57 -51.93 -0.39 1.17 16 LS Contribution 296.73 15.07 4.47 4.47 Total: -1.00 -27.96 296.73 -9.05 -37.01 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.10 Total: 7.01 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -0.86 Total: -20.65 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.11 Total: -38.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.24 Total: 16.97 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -2.44 Total: -6.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.96 -9.05 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397907591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.253 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds