Wall clock time and date at job start Thu Apr 9 2020 12:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 110.75642 * 2 1 4 4 C 1.55136 * 110.85587 * 236.27505 * 2 1 3 5 5 C 1.53859 * 106.89721 * 199.70776 * 4 2 1 6 6 H 1.09004 * 109.60429 * 287.33255 * 5 4 2 7 7 N 1.46899 * 109.46195 * 167.09393 * 5 4 2 8 8 C 1.46904 * 111.00031 * 155.46974 * 7 5 4 9 9 C 1.52997 * 109.47180 * 185.25643 * 8 7 5 10 10 C 1.50702 * 115.54932 * 39.77556 * 9 8 7 11 11 H 1.08004 * 119.99226 * 264.66793 * 10 9 8 12 12 C 1.37877 * 120.00411 * 84.66876 * 10 9 8 13 13 N 1.31511 * 120.00019 * 183.99383 * 12 10 9 14 14 Si 1.86804 * 119.99738 * 3.99510 * 12 10 9 15 15 H 1.48500 * 109.46911 * 93.34020 * 14 12 10 16 16 H 1.48497 * 109.47149 * 213.34125 * 14 12 10 17 17 H 1.48494 * 109.47058 * 333.34191 * 14 12 10 18 18 C 1.52997 * 117.49899 * 254.06357 * 9 8 7 19 19 C 1.53003 * 117.49556 * 185.44030 * 9 8 7 20 20 C 1.54271 * 108.92901 * 47.25566 * 5 4 2 21 21 S 1.83096 * 104.65015 * 332.04663 * 20 5 4 22 22 H 1.08996 * 109.46794 * 297.96182 * 1 2 3 23 23 H 1.08994 * 109.46620 * 57.95886 * 1 2 3 24 24 H 1.09004 * 109.46726 * 177.95721 * 1 2 3 25 25 H 1.08999 * 109.97254 * 80.34583 * 4 2 1 26 26 H 1.09003 * 109.97653 * 319.06769 * 4 2 1 27 27 H 1.00902 * 110.99472 * 279.41521 * 7 5 4 28 28 H 1.08997 * 109.46741 * 305.26041 * 8 7 5 29 29 H 1.09005 * 109.47251 * 65.25344 * 8 7 5 30 30 H 0.96996 * 119.99649 * 179.97438 * 13 12 10 31 31 H 1.09001 * 117.49802 * 359.97438 * 18 9 8 32 32 H 1.08994 * 117.49836 * 145.02336 * 18 9 8 33 33 H 1.09001 * 117.49633 * 214.97738 * 19 9 8 34 34 H 1.08997 * 117.50277 * 0.02562 * 19 9 8 35 35 H 1.09004 * 110.40147 * 90.83846 * 20 5 4 36 36 H 1.09001 * 110.40031 * 213.13805 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0824 -0.8049 -1.2057 5 6 3.5367 -1.1759 -0.8673 6 1 4.1654 -0.2877 -0.9324 7 7 4.0166 -2.1899 -1.8157 8 6 5.4811 -2.1561 -1.9263 9 6 5.9329 -3.1315 -3.0150 10 6 5.0697 -3.1730 -4.2496 11 1 4.2937 -3.9186 -4.3410 12 6 5.2704 -2.2591 -5.2623 13 7 4.4675 -2.2447 -6.3037 14 14 6.6830 -1.0414 -5.1549 15 1 7.8695 -1.5969 -5.8540 16 1 6.2841 0.2372 -5.7962 17 1 7.0182 -0.7966 -3.7292 18 6 6.5858 -4.4399 -2.5646 19 6 7.4378 -3.3381 -3.1980 20 6 3.5879 -1.7426 0.5666 21 16 2.1833 -0.9461 1.4298 22 1 -0.3633 0.4818 0.9077 23 1 -0.3632 0.5452 -0.8711 24 1 -0.3633 -1.0271 -0.0366 25 1 2.0544 -0.1920 -2.1067 26 1 1.4917 -1.7093 -1.3517 27 1 3.6949 -3.1099 -1.5547 28 1 5.8026 -1.1475 -2.1859 29 1 5.9242 -2.4447 -0.9732 30 1 4.6086 -1.6015 -7.0160 31 1 6.6937 -4.6055 -1.4927 32 1 6.3908 -5.3310 -3.1612 33 1 7.8034 -3.5045 -4.2113 34 1 8.1060 -2.7795 -2.5425 35 1 3.4605 -2.8250 0.5522 36 1 4.5303 -1.4780 1.0463 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397907595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:47 Heat of formation + Delta-G solvation = 20.914558 kcal Electronic energy + Delta-G solvation = -15670.734911 eV Core-core repulsion = 13281.454785 eV Total energy + Delta-G solvation = -2389.280126 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.96888 -36.49920 -33.56747 -31.95778 -30.07204 -26.59542 -25.85214 -24.43548 -21.98757 -21.58835 -20.48660 -18.89930 -16.71194 -16.24199 -15.43294 -15.09165 -14.64051 -14.39689 -13.71179 -13.57283 -13.24982 -12.78287 -12.57102 -12.50519 -12.40391 -11.89446 -11.64899 -11.26995 -11.17446 -11.00946 -10.66253 -10.51943 -10.44919 -10.06839 -9.88314 -9.48277 -9.06864 -8.48037 -8.38587 -7.73024 -7.63274 -5.98285 -3.96670 1.85763 2.43228 3.33642 3.43167 3.45989 4.35971 4.51730 4.70605 4.88505 4.94160 5.03337 5.10991 5.25711 5.32815 5.37642 5.60300 5.65258 5.70011 5.81347 5.87254 5.95497 6.03622 6.14414 6.16761 6.25081 6.30922 6.43111 6.50173 6.70702 7.01762 7.11157 7.67147 7.83670 8.01594 8.61563 9.04523 9.66197 11.14557 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.006913 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.771956 B = 4049.429482 C = 4550.906933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.040 4.040 3 H 0.094 0.906 4 C -0.111 4.111 5 C 0.082 3.918 6 H 0.083 0.917 7 N -0.641 5.641 8 C 0.097 3.903 9 C 0.005 3.995 10 C -0.455 4.455 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.902 5.902 14 Si 0.878 3.122 15 H -0.284 1.284 16 H -0.297 1.297 17 H -0.260 1.260 18 C -0.187 4.187 19 C -0.201 4.201 20 C -0.099 4.099 21 S -0.309 6.309 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.342 0.658 28 H 0.064 0.936 29 H 0.006 0.994 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 3.590 12.241 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.169 4.169 3 H 0.113 0.887 4 C -0.150 4.150 5 C -0.031 4.031 6 H 0.101 0.899 7 N -0.270 5.270 8 C -0.032 4.032 9 C 0.003 3.997 10 C -0.493 4.493 11 H 0.094 0.906 12 C -0.122 4.122 13 N -0.541 5.541 14 Si 0.707 3.293 15 H -0.211 1.211 16 H -0.224 1.224 17 H -0.185 1.185 18 C -0.224 4.224 19 C -0.239 4.239 20 C -0.249 4.249 21 S -0.084 6.084 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.161 0.839 28 H 0.082 0.918 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.429 3.990 12.625 13.677 hybrid contribution 1.629 0.385 -0.290 1.699 sum -1.801 4.375 12.335 13.211 Atomic orbital electron populations 1.21676 0.92065 1.03134 1.02068 1.23998 0.98949 1.00454 0.93504 0.88742 1.22560 0.94862 1.00612 0.96946 1.22464 0.96898 0.96929 0.86770 0.89914 1.60259 1.11362 1.07873 1.47530 1.21739 0.86369 1.00080 0.95060 1.19493 0.90673 0.92834 0.96672 1.20013 1.16090 1.15941 0.97248 0.90635 1.24855 0.95785 0.96425 0.95151 1.69896 1.37639 1.36911 1.09628 0.86908 0.82970 0.80772 0.78663 1.21092 1.22438 1.18466 1.22892 1.07147 0.94399 0.97940 1.22951 0.95942 1.04200 1.00827 1.24967 0.97873 1.02832 0.99235 1.87378 1.38155 1.60443 1.22468 0.92283 0.91217 0.91440 0.89070 0.89869 0.83903 0.91803 0.97631 0.92947 0.91380 0.89616 0.89509 0.91270 0.89077 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.38 37.16 0.35 -1.00 16 2 C -0.04 -0.49 3.84 -25.60 -0.10 -0.58 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.11 -1.54 5.51 -25.15 -0.14 -1.68 16 5 C 0.08 1.23 2.88 -66.60 -0.19 1.03 16 6 H 0.08 1.28 7.73 -51.93 -0.40 0.87 16 7 N -0.64 -11.67 5.55 -105.55 -0.59 -12.25 16 8 C 0.10 1.89 5.41 -3.82 -0.02 1.86 16 9 C 0.00 0.10 1.17 -155.66 -0.18 -0.08 16 10 C -0.46 -12.23 8.75 -34.44 -0.30 -12.53 16 11 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 12 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 13 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 14 Si 0.88 21.61 25.18 -169.99 -4.28 17.33 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 17 H -0.26 -6.01 5.25 56.52 0.30 -5.71 16 18 C -0.19 -3.66 9.88 -26.73 -0.26 -3.93 16 19 C -0.20 -4.19 7.42 -26.73 -0.20 -4.39 16 20 C -0.10 -1.33 6.85 37.82 0.26 -1.07 16 21 S -0.31 -4.19 22.73 -107.50 -2.44 -6.64 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 27 H 0.34 5.98 8.21 -39.29 -0.32 5.66 16 28 H 0.06 1.32 6.32 -51.93 -0.33 0.99 16 29 H 0.01 0.10 7.92 -51.93 -0.41 -0.31 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 32 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.09 1.91 7.19 -51.93 -0.37 1.54 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.21 7.61 -51.93 -0.40 0.82 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -28.87 296.04 -9.07 -37.94 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.11 Total: 5.86 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -0.88 Total: -20.23 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.19 Total: -38.73 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.28 Total: 17.33 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.44 Total: -6.64 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.87 -9.07 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397907595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.858 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds