Wall clock time and date at job start Thu Apr 9 2020 12:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 110.75642 * 2 1 4 4 C 1.55136 * 110.85587 * 236.27505 * 2 1 3 5 5 C 1.53859 * 106.89721 * 199.70776 * 4 2 1 6 6 H 1.09004 * 109.60429 * 287.33255 * 5 4 2 7 7 N 1.46899 * 109.46195 * 167.09393 * 5 4 2 8 8 C 1.46904 * 111.00031 * 155.46974 * 7 5 4 9 9 C 1.52997 * 109.47180 * 185.25643 * 8 7 5 10 10 C 1.50702 * 115.54932 * 39.77556 * 9 8 7 11 11 H 1.08004 * 119.99226 * 264.66793 * 10 9 8 12 12 C 1.37877 * 120.00411 * 84.66876 * 10 9 8 13 13 N 1.31511 * 120.00019 * 183.99383 * 12 10 9 14 14 Si 1.86804 * 119.99738 * 3.99510 * 12 10 9 15 15 H 1.48500 * 109.46911 * 93.34020 * 14 12 10 16 16 H 1.48497 * 109.47149 * 213.34125 * 14 12 10 17 17 H 1.48494 * 109.47058 * 333.34191 * 14 12 10 18 18 C 1.52997 * 117.49899 * 254.06357 * 9 8 7 19 19 C 1.53003 * 117.49556 * 185.44030 * 9 8 7 20 20 C 1.54271 * 108.92901 * 47.25566 * 5 4 2 21 21 S 1.83096 * 104.65015 * 332.04663 * 20 5 4 22 22 H 1.08996 * 109.46794 * 297.96182 * 1 2 3 23 23 H 1.08994 * 109.46620 * 57.95886 * 1 2 3 24 24 H 1.09004 * 109.46726 * 177.95721 * 1 2 3 25 25 H 1.08999 * 109.97254 * 80.34583 * 4 2 1 26 26 H 1.09003 * 109.97653 * 319.06769 * 4 2 1 27 27 H 1.00902 * 110.99472 * 279.41521 * 7 5 4 28 28 H 1.08997 * 109.46741 * 305.26041 * 8 7 5 29 29 H 1.09005 * 109.47251 * 65.25344 * 8 7 5 30 30 H 0.96996 * 119.99649 * 179.97438 * 13 12 10 31 31 H 1.09001 * 117.49802 * 359.97438 * 18 9 8 32 32 H 1.08994 * 117.49836 * 145.02336 * 18 9 8 33 33 H 1.09001 * 117.49633 * 214.97738 * 19 9 8 34 34 H 1.08997 * 117.50277 * 0.02562 * 19 9 8 35 35 H 1.09004 * 110.40147 * 90.83846 * 20 5 4 36 36 H 1.09001 * 110.40031 * 213.13805 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0824 -0.8049 -1.2057 5 6 3.5367 -1.1759 -0.8673 6 1 4.1654 -0.2877 -0.9324 7 7 4.0166 -2.1899 -1.8157 8 6 5.4811 -2.1561 -1.9263 9 6 5.9329 -3.1315 -3.0150 10 6 5.0697 -3.1730 -4.2496 11 1 4.2937 -3.9186 -4.3410 12 6 5.2704 -2.2591 -5.2623 13 7 4.4675 -2.2447 -6.3037 14 14 6.6830 -1.0414 -5.1549 15 1 7.8695 -1.5969 -5.8540 16 1 6.2841 0.2372 -5.7962 17 1 7.0182 -0.7966 -3.7292 18 6 6.5858 -4.4399 -2.5646 19 6 7.4378 -3.3381 -3.1980 20 6 3.5879 -1.7426 0.5666 21 16 2.1833 -0.9461 1.4298 22 1 -0.3633 0.4818 0.9077 23 1 -0.3632 0.5452 -0.8711 24 1 -0.3633 -1.0271 -0.0366 25 1 2.0544 -0.1920 -2.1067 26 1 1.4917 -1.7093 -1.3517 27 1 3.6949 -3.1099 -1.5547 28 1 5.8026 -1.1475 -2.1859 29 1 5.9242 -2.4447 -0.9732 30 1 4.6086 -1.6015 -7.0160 31 1 6.6937 -4.6055 -1.4927 32 1 6.3908 -5.3310 -3.1612 33 1 7.8034 -3.5045 -4.2113 34 1 8.1060 -2.7795 -2.5425 35 1 3.4605 -2.8250 0.5522 36 1 4.5303 -1.4780 1.0463 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397907595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:47 Heat of formation + Delta-G solvation = 3.281115 kcal Electronic energy + Delta-G solvation = -15671.499554 eV Core-core repulsion = 13281.454785 eV Total energy + Delta-G solvation = -2390.044769 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.41794 -37.91793 -34.73248 -34.07473 -31.27647 -27.78634 -27.63322 -26.00080 -23.36312 -22.90628 -21.68956 -20.69466 -18.29227 -17.59581 -16.99847 -16.43338 -16.13608 -15.74973 -15.12448 -14.89822 -14.59927 -14.48845 -14.07377 -13.71960 -13.67374 -13.14869 -12.97970 -12.88591 -12.38723 -12.28216 -12.21918 -12.06002 -11.90227 -11.69677 -11.35081 -11.01351 -10.87024 -10.45889 -10.18051 -9.06161 -8.71647 -8.14870 -6.15671 0.82550 1.38398 1.39099 1.41529 1.52316 2.46277 3.03823 3.23510 3.36125 3.59888 3.89061 3.92249 4.02557 4.17013 4.27045 4.35903 4.37965 4.48394 4.54896 4.61081 4.69445 4.82850 4.87368 4.88337 4.93584 5.06525 5.11313 5.14170 5.27444 5.39024 5.52261 5.82092 6.29207 6.46394 6.62230 6.88767 7.50289 9.01823 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.006913 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.771956 B = 4049.429482 C = 4550.906933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.030 4.030 3 H 0.105 0.895 4 C -0.109 4.109 5 C 0.085 3.915 6 H 0.081 0.919 7 N -0.664 5.664 8 C 0.107 3.893 9 C -0.024 4.024 10 C -0.442 4.442 11 H 0.029 0.971 12 C 0.020 3.980 13 N -0.956 5.956 14 Si 0.934 3.066 15 H -0.282 1.282 16 H -0.306 1.306 17 H -0.230 1.230 18 C -0.167 4.167 19 C -0.199 4.199 20 C -0.089 4.089 21 S -0.325 6.325 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.343 0.657 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.258 0.742 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 4.337 14.592 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 H 0.123 0.877 4 C -0.148 4.148 5 C -0.027 4.027 6 H 0.099 0.901 7 N -0.294 5.294 8 C -0.022 4.022 9 C -0.025 4.025 10 C -0.480 4.480 11 H 0.048 0.952 12 C -0.176 4.176 13 N -0.598 5.598 14 Si 0.761 3.239 15 H -0.208 1.208 16 H -0.234 1.234 17 H -0.153 1.153 18 C -0.204 4.204 19 C -0.237 4.237 20 C -0.239 4.239 21 S -0.100 6.100 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.162 0.838 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.234 4.726 15.014 15.898 hybrid contribution 1.174 0.052 -1.019 1.556 sum -1.060 4.778 13.995 14.826 Atomic orbital electron populations 1.21681 0.90695 1.03186 1.03136 1.24030 1.00012 1.00260 0.91571 0.87705 1.22504 0.94467 1.00377 0.97455 1.22445 0.97085 0.95961 0.87189 0.90072 1.60186 1.11029 1.08675 1.49527 1.21541 0.87154 0.98401 0.95147 1.19468 0.91071 0.95960 0.96001 1.20147 1.14974 1.13787 0.99089 0.95226 1.25630 0.98315 0.98688 0.94917 1.70057 1.40234 1.38530 1.10964 0.85989 0.79814 0.77931 0.80166 1.20808 1.23405 1.15311 1.22921 1.04812 0.92888 0.99787 1.22986 0.95028 1.04821 1.00829 1.24825 0.98297 1.02830 0.97951 1.87463 1.38378 1.60861 1.23300 0.91319 0.89979 0.91941 0.90134 0.90751 0.83763 0.92911 0.94656 0.93287 0.87861 0.90709 0.91197 0.88345 0.88872 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.38 71.99 0.68 -1.73 16 2 C -0.03 -0.67 3.84 31.33 0.12 -0.55 16 3 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.11 -2.93 5.51 31.62 0.17 -2.75 16 5 C 0.08 2.41 2.88 45.64 0.13 2.54 16 6 H 0.08 2.34 7.73 -2.39 -0.02 2.32 16 7 N -0.66 -23.39 5.55 -487.84 -2.71 -26.10 16 8 C 0.11 3.88 5.41 86.30 0.47 4.34 16 9 C -0.02 -1.01 1.17 -52.93 -0.06 -1.07 16 10 C -0.44 -24.10 8.75 25.60 0.22 -23.88 16 11 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 12 C 0.02 1.15 5.47 84.65 0.46 1.61 16 13 N -0.96 -59.87 13.96 21.45 0.30 -59.57 16 14 Si 0.93 44.39 25.18 68.60 1.73 46.12 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 16 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 17 H -0.23 -9.73 5.25 99.48 0.52 -9.21 16 18 C -0.17 -6.07 9.88 30.59 0.30 -5.77 16 19 C -0.20 -7.65 7.42 30.60 0.23 -7.43 16 20 C -0.09 -2.18 6.85 72.41 0.50 -1.69 16 21 S -0.32 -8.13 22.73 -56.49 -1.28 -9.42 16 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 27 H 0.34 11.70 8.21 -89.69 -0.74 10.97 16 28 H 0.05 2.02 6.32 -2.39 -0.02 2.01 16 29 H 0.04 1.08 7.92 -2.38 -0.02 1.07 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.10 3.06 8.08 -2.39 -0.02 3.04 16 32 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.07 2.93 7.19 -2.39 -0.02 2.91 16 34 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.09 2.26 7.61 -2.39 -0.02 2.25 16 36 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -63.06 296.04 1.38 -61.68 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.12 Total: 23.67 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 3.22 Total: -36.38 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.41 Total: -85.67 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.73 Total: 46.12 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.28 Total: -9.42 kcal Total: -63.06 1.38 -61.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397907595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.963 kcal (2) G-P(sol) polarization free energy of solvation -63.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds