Wall clock time and date at job start Thu Apr 9 2020 12:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99467 * 2 1 4 4 C 1.55141 * 109.97142 * 121.26180 * 2 1 3 5 5 S 1.83455 * 102.39103 * 161.57970 * 4 2 1 6 6 C 1.83095 * 97.47484 * 336.99621 * 5 4 2 7 7 C 1.54272 * 104.65111 * 357.71808 * 6 5 4 8 8 H 1.08999 * 109.60928 * 268.03649 * 7 6 5 9 9 N 1.46898 * 109.61267 * 147.87281 * 7 6 5 10 10 C 1.46908 * 110.99870 * 82.17784 * 9 7 6 11 11 C 1.52998 * 109.46961 * 185.08036 * 10 9 7 12 12 C 1.50700 * 115.55372 * 65.14414 * 11 10 9 13 13 H 1.08005 * 119.99864 * 264.84040 * 12 11 10 14 14 C 1.37870 * 119.99952 * 84.84024 * 12 11 10 15 15 N 1.31519 * 120.00075 * 184.66609 * 14 12 11 16 16 Si 1.86801 * 120.00134 * 4.66398 * 14 12 11 17 17 H 1.48501 * 109.47349 * 94.51542 * 16 14 12 18 18 H 1.48497 * 109.47219 * 214.51848 * 16 14 12 19 19 H 1.48503 * 109.47163 * 334.51724 * 16 14 12 20 20 C 1.53000 * 117.49607 * 279.47353 * 11 10 9 21 21 C 1.52998 * 117.49714 * 210.81833 * 11 10 9 22 22 H 1.09000 * 109.47276 * 300.19708 * 1 2 3 23 23 H 1.09005 * 109.46362 * 60.19222 * 1 2 3 24 24 H 1.08996 * 109.47229 * 180.19009 * 1 2 3 25 25 H 1.09003 * 110.85663 * 43.29333 * 4 2 1 26 26 H 1.08999 * 110.85416 * 279.86175 * 4 2 1 27 27 H 1.08999 * 110.40056 * 116.50889 * 6 5 4 28 28 H 1.09000 * 110.40067 * 238.81097 * 6 5 4 29 29 H 1.00893 * 111.00332 * 206.12958 * 9 7 6 30 30 H 1.08998 * 109.46685 * 305.07631 * 10 9 7 31 31 H 1.08993 * 109.46904 * 65.07589 * 10 9 7 32 32 H 0.96995 * 119.99750 * 180.02562 * 15 14 12 33 33 H 1.09001 * 117.49952 * 0.02562 * 20 11 10 34 34 H 1.08996 * 117.50150 * 145.02055 * 20 11 10 35 35 H 1.08998 * 117.50215 * 214.98266 * 21 11 10 36 36 H 1.09006 * 117.49860 * 359.97314 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0599 -0.7567 1.2464 5 16 3.7921 -1.1314 0.7725 6 6 3.5687 -1.0356 -1.0422 7 6 2.0639 -0.7558 -1.2358 8 1 1.5279 -1.6983 -1.3473 9 7 1.8657 0.0651 -2.4378 10 6 1.8661 -0.7663 -3.6490 11 6 1.7848 0.1325 -4.8845 12 6 2.9711 1.0336 -5.1120 13 1 2.9525 2.0519 -4.7525 14 6 4.0800 0.5582 -5.7791 15 7 5.1502 1.3135 -5.8976 16 14 4.0626 -1.1588 -6.5147 17 1 3.6631 -1.0815 -7.9428 18 1 5.4186 -1.7552 -6.4116 19 1 3.0922 -2.0047 -5.7743 20 6 0.4065 0.6655 -5.2809 21 6 1.0752 -0.4266 -6.1194 22 1 -0.3634 0.5169 0.8882 23 1 -0.3632 0.5109 -0.8918 24 1 -0.3633 -1.0276 0.0034 25 1 1.4957 -1.6745 1.4122 26 1 2.0285 -0.1190 2.1299 27 1 4.1629 -0.2208 -1.4558 28 1 3.8443 -1.9811 -1.5094 29 1 1.0165 0.6056 -2.3706 30 1 2.7837 -1.3532 -3.6865 31 1 1.0067 -1.4364 -3.6299 32 1 5.9302 0.9791 -6.3672 33 1 -0.4423 0.3762 -4.6612 34 1 0.3577 1.6677 -5.7065 35 1 1.4663 -0.1425 -7.0963 36 1 0.6667 -1.4349 -6.0517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397913297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:53 Heat of formation + Delta-G solvation = 19.852440 kcal Electronic energy + Delta-G solvation = -15851.090727 eV Core-core repulsion = 13461.764544 eV Total energy + Delta-G solvation = -2389.326183 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.25183 -36.69572 -32.95399 -31.98412 -29.57480 -27.29313 -26.02434 -24.63279 -22.21223 -21.60198 -20.03429 -18.84101 -16.78814 -16.13964 -15.84202 -14.95354 -14.42298 -14.31012 -14.00737 -13.45750 -13.27687 -12.90352 -12.78151 -12.42531 -12.36857 -11.74287 -11.60237 -11.41470 -11.17069 -10.98619 -10.79480 -10.51989 -10.46674 -10.10460 -9.85838 -9.46398 -9.06610 -8.55014 -8.39810 -7.84181 -7.55173 -6.01285 -4.00628 1.96121 2.50694 3.31331 3.41715 3.44820 4.32138 4.48328 4.54728 4.81423 4.85818 5.06882 5.21266 5.26203 5.26960 5.38054 5.46844 5.56349 5.69383 5.81957 5.85436 5.95891 6.00575 6.11607 6.15938 6.16978 6.28259 6.42041 6.48215 6.70472 7.04898 7.15821 7.61599 7.77847 7.93966 8.61338 9.04385 9.62122 11.11199 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.007693 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.593932 B = 3638.566670 C = 4241.909385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.098 0.902 4 C -0.064 4.064 5 S -0.308 6.308 6 C -0.056 4.056 7 C 0.086 3.914 8 H 0.045 0.955 9 N -0.654 5.654 10 C 0.100 3.900 11 C 0.011 3.989 12 C -0.463 4.463 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.900 5.900 16 Si 0.875 3.125 17 H -0.282 1.282 18 H -0.296 1.296 19 H -0.259 1.259 20 C -0.185 4.185 21 C -0.202 4.202 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.338 0.662 30 H 0.067 0.933 31 H 0.003 0.997 32 H 0.262 0.738 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -5.287 10.804 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.117 0.883 4 C -0.213 4.213 5 S -0.083 6.083 6 C -0.204 4.204 7 C -0.025 4.025 8 H 0.063 0.937 9 N -0.285 5.285 10 C -0.029 4.029 11 C 0.010 3.990 12 C -0.501 4.501 13 H 0.096 0.904 14 C -0.127 4.127 15 N -0.538 5.538 16 Si 0.703 3.297 17 H -0.209 1.209 18 H -0.223 1.223 19 H -0.183 1.183 20 C -0.222 4.222 21 C -0.240 4.240 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.158 0.842 30 H 0.086 0.914 31 H 0.021 0.979 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.397 -5.353 11.336 14.556 hybrid contribution -1.684 -1.227 -1.199 2.404 sum -9.081 -6.579 10.136 15.116 Atomic orbital electron populations 1.21790 0.93867 1.02006 1.02459 1.22399 0.96463 1.01264 0.91973 0.88327 1.24194 0.93612 1.02865 1.00604 1.87482 1.16640 1.94333 1.09799 1.24108 0.99457 1.06178 0.90682 1.22381 0.93484 0.95444 0.91219 0.93706 1.60241 1.43238 1.25391 0.99677 1.21766 0.98320 0.93307 0.89462 1.19407 0.92497 0.96989 0.90145 1.20140 0.96435 0.98270 1.35208 0.90399 1.24934 0.95100 0.96810 0.95853 1.69905 1.03882 1.37195 1.42840 0.86925 0.76803 0.86026 0.79913 1.20881 1.22255 1.18348 1.22810 0.96755 0.98095 1.04539 1.22994 1.06947 0.96380 0.97698 0.91944 0.91856 0.92624 0.89531 0.88213 0.86736 0.89367 0.84222 0.91425 0.97887 0.92822 0.91521 0.89561 0.89506 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.13 37.16 0.34 -1.04 16 2 C -0.10 -1.21 2.67 -88.76 -0.24 -1.45 16 3 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.06 -0.72 6.73 38.29 0.26 -0.46 16 5 S -0.31 -4.54 23.26 -107.50 -2.50 -7.04 16 6 C -0.06 -0.90 6.60 37.82 0.25 -0.65 16 7 C 0.09 1.28 2.33 -66.32 -0.15 1.12 16 8 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 9 N -0.65 -11.46 6.15 -105.26 -0.65 -12.11 16 10 C 0.10 1.98 4.91 -3.82 -0.02 1.96 16 11 C 0.01 0.24 0.97 -155.66 -0.15 0.09 16 12 C -0.46 -12.59 9.33 -34.44 -0.32 -12.91 16 13 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 16 Si 0.87 21.51 24.94 -169.99 -4.24 17.27 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.26 -5.97 5.69 56.52 0.32 -5.64 16 20 C -0.18 -3.60 9.96 -26.70 -0.27 -3.86 16 21 C -0.20 -4.20 7.31 -26.70 -0.20 -4.40 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.11 2.14 8.08 -51.93 -0.42 1.72 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.34 5.45 7.21 -39.30 -0.28 5.17 16 30 H 0.07 1.45 6.75 -51.93 -0.35 1.10 16 31 H 0.00 0.06 8.09 -51.93 -0.42 -0.36 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 35 H 0.09 1.90 7.13 -51.93 -0.37 1.53 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 295.36 15.07 4.45 4.45 Total: -1.00 -29.19 295.36 -8.81 -38.01 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.06 Total: 5.60 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -0.59 Total: -19.60 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.13 Total: -38.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.24 Total: 17.27 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -2.50 Total: -7.04 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.19 -8.81 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397913297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.861 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds