Wall clock time and date at job start Thu Apr 9 2020 12:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99467 * 2 1 4 4 C 1.55141 * 109.97142 * 121.26180 * 2 1 3 5 5 S 1.83455 * 102.39103 * 161.57970 * 4 2 1 6 6 C 1.83095 * 97.47484 * 336.99621 * 5 4 2 7 7 C 1.54272 * 104.65111 * 357.71808 * 6 5 4 8 8 H 1.08999 * 109.60928 * 268.03649 * 7 6 5 9 9 N 1.46898 * 109.61267 * 147.87281 * 7 6 5 10 10 C 1.46908 * 110.99870 * 82.17784 * 9 7 6 11 11 C 1.52998 * 109.46961 * 185.08036 * 10 9 7 12 12 C 1.50700 * 115.55372 * 65.14414 * 11 10 9 13 13 H 1.08005 * 119.99864 * 264.84040 * 12 11 10 14 14 C 1.37870 * 119.99952 * 84.84024 * 12 11 10 15 15 N 1.31519 * 120.00075 * 184.66609 * 14 12 11 16 16 Si 1.86801 * 120.00134 * 4.66398 * 14 12 11 17 17 H 1.48501 * 109.47349 * 94.51542 * 16 14 12 18 18 H 1.48497 * 109.47219 * 214.51848 * 16 14 12 19 19 H 1.48503 * 109.47163 * 334.51724 * 16 14 12 20 20 C 1.53000 * 117.49607 * 279.47353 * 11 10 9 21 21 C 1.52998 * 117.49714 * 210.81833 * 11 10 9 22 22 H 1.09000 * 109.47276 * 300.19708 * 1 2 3 23 23 H 1.09005 * 109.46362 * 60.19222 * 1 2 3 24 24 H 1.08996 * 109.47229 * 180.19009 * 1 2 3 25 25 H 1.09003 * 110.85663 * 43.29333 * 4 2 1 26 26 H 1.08999 * 110.85416 * 279.86175 * 4 2 1 27 27 H 1.08999 * 110.40056 * 116.50889 * 6 5 4 28 28 H 1.09000 * 110.40067 * 238.81097 * 6 5 4 29 29 H 1.00893 * 111.00332 * 206.12958 * 9 7 6 30 30 H 1.08998 * 109.46685 * 305.07631 * 10 9 7 31 31 H 1.08993 * 109.46904 * 65.07589 * 10 9 7 32 32 H 0.96995 * 119.99750 * 180.02562 * 15 14 12 33 33 H 1.09001 * 117.49952 * 0.02562 * 20 11 10 34 34 H 1.08996 * 117.50150 * 145.02055 * 20 11 10 35 35 H 1.08998 * 117.50215 * 214.98266 * 21 11 10 36 36 H 1.09006 * 117.49860 * 359.97314 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0599 -0.7567 1.2464 5 16 3.7921 -1.1314 0.7725 6 6 3.5687 -1.0356 -1.0422 7 6 2.0639 -0.7558 -1.2358 8 1 1.5279 -1.6983 -1.3473 9 7 1.8657 0.0651 -2.4378 10 6 1.8661 -0.7663 -3.6490 11 6 1.7848 0.1325 -4.8845 12 6 2.9711 1.0336 -5.1120 13 1 2.9525 2.0519 -4.7525 14 6 4.0800 0.5582 -5.7791 15 7 5.1502 1.3135 -5.8976 16 14 4.0626 -1.1588 -6.5147 17 1 3.6631 -1.0815 -7.9428 18 1 5.4186 -1.7552 -6.4116 19 1 3.0922 -2.0047 -5.7743 20 6 0.4065 0.6655 -5.2809 21 6 1.0752 -0.4266 -6.1194 22 1 -0.3634 0.5169 0.8882 23 1 -0.3632 0.5109 -0.8918 24 1 -0.3633 -1.0276 0.0034 25 1 1.4957 -1.6745 1.4122 26 1 2.0285 -0.1190 2.1299 27 1 4.1629 -0.2208 -1.4558 28 1 3.8443 -1.9811 -1.5094 29 1 1.0165 0.6056 -2.3706 30 1 2.7837 -1.3532 -3.6865 31 1 1.0067 -1.4364 -3.6299 32 1 5.9302 0.9791 -6.3672 33 1 -0.4423 0.3762 -4.6612 34 1 0.3577 1.6677 -5.7065 35 1 1.4663 -0.1425 -7.0963 36 1 0.6667 -1.4349 -6.0517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397913297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:52 Heat of formation + Delta-G solvation = 0.987674 kcal Electronic energy + Delta-G solvation = -15851.908765 eV Core-core repulsion = 13461.764544 eV Total energy + Delta-G solvation = -2390.144220 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.59993 -38.14332 -34.30113 -34.00953 -30.76721 -28.37831 -27.76318 -26.23331 -23.49540 -23.09479 -21.21490 -20.58282 -18.36044 -17.73443 -16.99172 -16.72614 -15.94314 -15.54694 -15.20983 -14.85401 -14.78646 -14.54081 -14.00194 -13.87164 -13.52794 -13.08056 -12.97979 -12.76437 -12.56897 -12.46820 -12.17996 -12.04499 -11.89644 -11.63329 -11.37600 -10.99102 -10.91229 -10.49892 -10.21568 -9.18331 -8.73241 -8.20603 -6.22924 0.84807 1.35345 1.38625 1.40338 1.50334 2.41384 3.00822 3.15297 3.43900 3.56543 3.74866 3.90223 4.09417 4.19929 4.27244 4.39683 4.46003 4.49406 4.56461 4.57696 4.64366 4.78404 4.80502 4.87760 4.94032 4.98877 5.11502 5.19107 5.32632 5.44371 5.55639 5.78319 6.23208 6.41826 6.64779 6.84043 7.43249 8.95946 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.007693 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.593932 B = 3638.566670 C = 4241.909385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.047 4.047 5 S -0.341 6.341 6 C -0.056 4.056 7 C 0.090 3.910 8 H 0.059 0.941 9 N -0.673 5.673 10 C 0.110 3.890 11 C -0.018 4.018 12 C -0.454 4.454 13 H 0.028 0.972 14 C 0.013 3.987 15 N -0.956 5.956 16 Si 0.935 3.065 17 H -0.277 1.277 18 H -0.305 1.305 19 H -0.228 1.228 20 C -0.162 4.162 21 C -0.200 4.200 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.347 0.653 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.260 0.740 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 -7.330 11.995 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.100 0.900 4 C -0.195 4.195 5 S -0.115 6.115 6 C -0.205 4.205 7 C -0.021 4.021 8 H 0.077 0.923 9 N -0.306 5.306 10 C -0.019 4.019 11 C -0.019 4.019 12 C -0.492 4.492 13 H 0.046 0.954 14 C -0.183 4.183 15 N -0.597 5.597 16 Si 0.761 3.239 17 H -0.203 1.203 18 H -0.233 1.233 19 H -0.150 1.150 20 C -0.200 4.200 21 C -0.237 4.237 22 H 0.100 0.900 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.127 0.873 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.168 0.832 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.590 -7.397 12.542 18.004 hybrid contribution -0.723 -0.453 -1.496 1.722 sum -11.313 -7.851 11.045 17.652 Atomic orbital electron populations 1.21769 0.91381 1.03057 1.03319 1.22326 0.98302 0.99945 0.90882 0.89962 1.24351 0.90301 1.04122 1.00751 1.87578 1.20775 1.94455 1.08703 1.23972 1.00381 1.04412 0.91690 1.22433 0.92385 0.96040 0.91241 0.92300 1.60083 1.44148 1.26237 1.00173 1.21504 0.98439 0.92984 0.88948 1.19320 0.92001 0.98182 0.92439 1.20309 0.98413 0.97064 1.33419 0.95382 1.25771 0.94717 1.00991 0.96778 1.70074 1.04957 1.39627 1.45062 0.85944 0.76966 0.81561 0.79428 1.20317 1.23260 1.15050 1.22843 0.96120 0.97402 1.03590 1.23039 1.06332 0.98316 0.96046 0.89993 0.92163 0.91427 0.87315 0.86164 0.90563 0.89771 0.83177 0.93662 0.94829 0.93128 0.87627 0.90722 0.91168 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.13 71.98 0.66 -1.43 16 2 C -0.09 -2.02 2.67 -9.59 -0.03 -2.05 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.05 -0.91 6.73 72.72 0.49 -0.43 16 5 S -0.34 -9.77 23.26 -56.49 -1.31 -11.08 16 6 C -0.06 -1.81 6.60 72.41 0.48 -1.33 16 7 C 0.09 2.50 2.33 45.82 0.11 2.61 16 8 H 0.06 1.50 7.87 -2.39 -0.02 1.48 16 9 N -0.67 -22.75 6.15 -486.92 -3.00 -25.75 16 10 C 0.11 4.11 4.91 86.30 0.42 4.53 16 11 C -0.02 -0.78 0.97 -52.93 -0.05 -0.83 16 12 C -0.45 -25.42 9.33 25.60 0.24 -25.18 16 13 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 14 C 0.01 0.76 5.47 84.65 0.46 1.23 16 15 N -0.96 -61.02 13.96 21.45 0.30 -60.72 16 16 Si 0.94 44.77 24.94 68.60 1.71 46.48 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 19 H -0.23 -9.66 5.69 99.48 0.57 -9.09 16 20 C -0.16 -5.84 9.96 30.62 0.30 -5.54 16 21 C -0.20 -7.65 7.31 30.62 0.22 -7.43 16 22 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 0.98 6.99 -2.38 -0.02 0.97 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.11 1.70 8.10 -2.39 -0.02 1.68 16 26 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 3.03 8.08 -2.39 -0.02 3.01 16 28 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.35 10.46 7.21 -89.70 -0.65 9.81 16 30 H 0.04 1.87 6.75 -2.39 -0.02 1.85 16 31 H 0.03 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.07 2.93 7.13 -2.39 -0.02 2.91 16 36 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 Total: -1.00 -66.75 295.36 1.27 -65.48 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.26 Total: 21.43 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 3.31 Total: -35.85 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.70 Total: -86.47 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.71 Total: 46.48 kcal Atomic # 16 Polarization: -9.77 SS G_CDS: -1.31 Total: -11.08 kcal Total: -66.75 1.27 -65.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397913297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.469 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds