Wall clock time and date at job start Thu Apr 9 2020 12:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 108.71040 * 2 1 4 4 C 1.54261 * 108.86734 * 118.46595 * 2 1 3 5 5 S 1.83960 * 102.57926 * 145.34383 * 4 2 1 6 6 C 1.83955 * 94.81030 * 325.50715 * 5 4 2 7 7 C 1.52332 * 108.86505 * 241.54045 * 2 1 3 8 8 H 1.09004 * 108.86669 * 118.51088 * 7 2 1 9 9 N 1.46898 * 108.87282 * 0.02562 * 7 2 1 10 10 C 1.46898 * 111.00393 * 168.78043 * 9 7 2 11 11 C 1.52998 * 109.47401 * 181.20398 * 10 9 7 12 12 C 1.50707 * 115.54963 * 65.22964 * 11 10 9 13 13 H 1.07995 * 120.00380 * 269.38374 * 12 11 10 14 14 C 1.37878 * 119.99619 * 89.10959 * 12 11 10 15 15 N 1.31507 * 119.99967 * 174.99797 * 14 12 11 16 16 Si 1.86801 * 119.99866 * 355.00527 * 14 12 11 17 17 H 1.48495 * 109.47560 * 90.82688 * 16 14 12 18 18 H 1.48510 * 109.46996 * 210.82580 * 16 14 12 19 19 H 1.48493 * 109.47268 * 330.82038 * 16 14 12 20 20 C 1.52998 * 117.52004 * 210.93512 * 11 10 9 21 21 C 1.53001 * 117.49495 * 279.56679 * 11 10 9 22 22 H 1.09002 * 109.47143 * 172.20821 * 1 2 3 23 23 H 1.09003 * 109.46649 * 292.20628 * 1 2 3 24 24 H 1.08997 * 109.46921 * 52.20518 * 1 2 3 25 25 H 1.08990 * 110.78765 * 263.61536 * 4 2 1 26 26 H 1.09002 * 110.78659 * 26.88804 * 4 2 1 27 27 H 1.09003 * 110.78574 * 276.22667 * 6 5 4 28 28 H 1.08997 * 110.79169 * 152.76631 * 6 5 4 29 29 H 1.00898 * 110.99750 * 44.81923 * 9 7 2 30 30 H 1.08992 * 109.47007 * 61.19993 * 10 9 7 31 31 H 1.09006 * 109.46684 * 301.20183 * 10 9 7 32 32 H 0.97001 * 120.00386 * 179.97438 * 15 14 12 33 33 H 1.08997 * 117.50266 * 214.96830 * 20 11 10 34 34 H 1.09004 * 117.49904 * 359.97438 * 20 11 10 35 35 H 1.08998 * 117.50289 * 359.97103 * 21 11 10 36 36 H 1.09008 * 117.49577 * 144.99710 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8797 1.0324 0.0000 4 6 2.0289 -0.6958 1.2832 5 16 3.5560 -1.5464 0.7100 6 6 2.9048 -1.9170 -0.9700 7 6 2.0226 -0.6869 -1.2673 8 1 2.6025 0.0268 -1.8525 9 7 0.8609 -1.1148 -2.0580 10 6 1.2679 -1.5407 -3.4037 11 6 0.0306 -1.9497 -4.2053 12 6 -0.9471 -0.8418 -4.5019 13 1 -1.7571 -0.6387 -3.8171 14 6 -0.8042 -0.0839 -5.6448 15 7 -1.7112 0.8165 -5.9544 16 14 0.6780 -0.3362 -6.7534 17 1 0.3556 -1.3522 -7.7873 18 1 1.0270 0.9478 -7.4131 19 1 1.8296 -0.8044 -5.9414 20 6 0.2026 -3.0420 -5.2627 21 6 -0.5395 -3.3482 -3.9601 22 1 -0.3633 -1.0182 -0.1393 23 1 -0.3633 0.3884 0.9515 24 1 -0.3633 0.6298 -0.8121 25 1 2.2612 0.0374 2.0555 26 1 1.2939 -1.4155 1.6438 27 1 2.3070 -2.8285 -0.9607 28 1 3.7178 -1.9937 -1.6919 29 1 0.1663 -0.3845 -2.1045 30 1 1.9475 -2.3893 -3.3262 31 1 1.7719 -0.7165 -3.9087 32 1 -1.6105 1.3501 -6.7582 33 1 -0.3914 -2.9595 -6.1729 34 1 1.1975 -3.4693 -5.3877 35 1 -0.0328 -3.9770 -3.2281 36 1 -1.6217 -3.4669 -4.0134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397913298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:55 Heat of formation + Delta-G solvation = 29.062992 kcal Electronic energy + Delta-G solvation = -15961.187729 eV Core-core repulsion = 13572.260946 eV Total energy + Delta-G solvation = -2388.926783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.43383 -36.66086 -32.71725 -32.09864 -29.65343 -27.26179 -25.83746 -24.65745 -22.87237 -21.52491 -19.11460 -18.79855 -16.76855 -16.31378 -15.89608 -14.91998 -14.85380 -14.44911 -13.91674 -13.45542 -13.11863 -12.85329 -12.60759 -12.30730 -11.99638 -11.79196 -11.60961 -11.11130 -11.08015 -10.94819 -10.75328 -10.56418 -10.41242 -10.01383 -9.88710 -9.56905 -8.98434 -8.62333 -8.49290 -7.78241 -7.68950 -6.15648 -4.18251 1.95765 2.35079 3.25691 3.35178 3.39347 4.38498 4.49735 4.54530 4.83166 5.00912 5.08889 5.15378 5.29093 5.35463 5.56788 5.62490 5.74032 5.80221 5.85499 5.89602 6.12706 6.14739 6.17923 6.24680 6.38474 6.46995 6.54415 6.58723 6.80341 7.08979 7.19149 7.65809 7.75039 8.02975 8.47921 8.88651 9.48888 10.95911 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.030769 B = 0.007024 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.784561 B = 3985.337129 C = 4196.713365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.051 4.051 5 S -0.321 6.321 6 C -0.047 4.047 7 C 0.084 3.916 8 H 0.045 0.955 9 N -0.672 5.672 10 C 0.092 3.908 11 C 0.006 3.994 12 C -0.489 4.489 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.897 5.897 16 Si 0.879 3.121 17 H -0.278 1.278 18 H -0.296 1.296 19 H -0.260 1.260 20 C -0.206 4.206 21 C -0.168 4.168 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.361 0.639 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.220 -2.842 10.358 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.199 4.199 5 S -0.095 6.095 6 C -0.196 4.196 7 C -0.028 4.028 8 H 0.063 0.937 9 N -0.309 5.309 10 C -0.037 4.037 11 C 0.004 3.996 12 C -0.526 4.526 13 H 0.096 0.904 14 C -0.125 4.125 15 N -0.535 5.535 16 Si 0.707 3.293 17 H -0.204 1.204 18 H -0.223 1.223 19 H -0.184 1.184 20 C -0.244 4.244 21 C -0.205 4.205 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.185 0.815 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.240 -3.550 11.019 14.210 hybrid contribution -0.021 1.000 -1.811 2.068 sum 8.219 -2.551 9.209 12.604 Atomic orbital electron populations 1.21897 0.93203 1.04190 1.01134 1.21671 0.98028 0.99690 0.91868 0.90421 1.24200 0.95098 1.00880 0.99733 1.87810 1.26040 1.76866 1.18798 1.24271 1.00628 1.01843 0.92823 1.21980 0.92374 0.93632 0.94845 0.93712 1.60919 1.10745 1.44546 1.14690 1.21737 0.96435 0.97775 0.87748 1.19318 0.95092 0.89118 0.96036 1.20300 1.11321 1.13519 1.07477 0.90378 1.24992 0.95707 0.94629 0.97199 1.69901 1.34063 1.23608 1.25885 0.86866 0.84417 0.76867 0.81148 1.20445 1.22298 1.18411 1.22967 1.00000 1.07160 0.94260 1.22682 0.98927 1.01146 0.97749 0.90056 0.93172 0.91715 0.88291 0.89009 0.88101 0.88622 0.81454 0.93598 0.95475 0.92608 0.89626 0.91278 0.90944 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 7.69 37.16 0.29 -1.56 16 2 C -0.09 -1.16 3.17 -90.30 -0.29 -1.45 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.05 -0.58 6.91 37.82 0.26 -0.32 16 5 S -0.32 -4.35 23.27 -107.50 -2.50 -6.85 16 6 C -0.05 -0.66 5.99 37.82 0.23 -0.43 16 7 C 0.08 1.23 2.96 -67.39 -0.20 1.03 16 8 H 0.04 0.70 8.03 -51.93 -0.42 0.28 16 9 N -0.67 -11.56 4.99 -106.39 -0.53 -12.09 16 10 C 0.09 1.80 4.96 -3.83 -0.02 1.79 16 11 C 0.01 0.12 1.03 -155.66 -0.16 -0.04 16 12 C -0.49 -12.87 8.79 -34.44 -0.30 -13.17 16 13 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 14 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 16 Si 0.88 21.22 24.90 -169.99 -4.23 16.99 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.26 -5.95 5.76 56.52 0.33 -5.63 16 20 C -0.21 -4.33 7.64 -26.73 -0.20 -4.54 16 21 C -0.17 -3.38 9.95 -26.73 -0.27 -3.65 16 22 H 0.08 1.13 7.37 -51.93 -0.38 0.75 16 23 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 24 H 0.06 0.91 6.86 -51.93 -0.36 0.55 16 25 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.01 7.85 -51.93 -0.41 0.60 16 27 H 0.10 1.46 8.05 -51.93 -0.42 1.04 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.36 6.68 5.49 -39.29 -0.22 6.46 16 30 H 0.05 0.83 7.31 -51.93 -0.38 0.45 16 31 H 0.03 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.09 1.91 7.27 -51.93 -0.38 1.54 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 LS Contribution 289.76 15.07 4.37 4.37 Total: -1.00 -27.61 289.76 -8.77 -36.39 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.89 Total: 7.13 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -0.76 Total: -20.30 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.24 Total: -37.72 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.23 Total: 16.99 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -2.50 Total: -6.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.61 -8.77 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397913298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.450 kcal (2) G-P(sol) polarization free energy of solvation -27.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds