Wall clock time and date at job start Thu Apr 9 2020 12:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 108.71040 * 2 1 4 4 C 1.54261 * 108.86734 * 118.46595 * 2 1 3 5 5 S 1.83960 * 102.57926 * 145.34383 * 4 2 1 6 6 C 1.83955 * 94.81030 * 325.50715 * 5 4 2 7 7 C 1.52332 * 108.86505 * 241.54045 * 2 1 3 8 8 H 1.09004 * 108.86669 * 118.51088 * 7 2 1 9 9 N 1.46898 * 108.87282 * 0.02562 * 7 2 1 10 10 C 1.46898 * 111.00393 * 168.78043 * 9 7 2 11 11 C 1.52998 * 109.47401 * 181.20398 * 10 9 7 12 12 C 1.50707 * 115.54963 * 65.22964 * 11 10 9 13 13 H 1.07995 * 120.00380 * 269.38374 * 12 11 10 14 14 C 1.37878 * 119.99619 * 89.10959 * 12 11 10 15 15 N 1.31507 * 119.99967 * 174.99797 * 14 12 11 16 16 Si 1.86801 * 119.99866 * 355.00527 * 14 12 11 17 17 H 1.48495 * 109.47560 * 90.82688 * 16 14 12 18 18 H 1.48510 * 109.46996 * 210.82580 * 16 14 12 19 19 H 1.48493 * 109.47268 * 330.82038 * 16 14 12 20 20 C 1.52998 * 117.52004 * 210.93512 * 11 10 9 21 21 C 1.53001 * 117.49495 * 279.56679 * 11 10 9 22 22 H 1.09002 * 109.47143 * 172.20821 * 1 2 3 23 23 H 1.09003 * 109.46649 * 292.20628 * 1 2 3 24 24 H 1.08997 * 109.46921 * 52.20518 * 1 2 3 25 25 H 1.08990 * 110.78765 * 263.61536 * 4 2 1 26 26 H 1.09002 * 110.78659 * 26.88804 * 4 2 1 27 27 H 1.09003 * 110.78574 * 276.22667 * 6 5 4 28 28 H 1.08997 * 110.79169 * 152.76631 * 6 5 4 29 29 H 1.00898 * 110.99750 * 44.81923 * 9 7 2 30 30 H 1.08992 * 109.47007 * 61.19993 * 10 9 7 31 31 H 1.09006 * 109.46684 * 301.20183 * 10 9 7 32 32 H 0.97001 * 120.00386 * 179.97438 * 15 14 12 33 33 H 1.08997 * 117.50266 * 214.96830 * 20 11 10 34 34 H 1.09004 * 117.49904 * 359.97438 * 20 11 10 35 35 H 1.08998 * 117.50289 * 359.97103 * 21 11 10 36 36 H 1.09008 * 117.49577 * 144.99710 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8797 1.0324 0.0000 4 6 2.0289 -0.6958 1.2832 5 16 3.5560 -1.5464 0.7100 6 6 2.9048 -1.9170 -0.9700 7 6 2.0226 -0.6869 -1.2673 8 1 2.6025 0.0268 -1.8525 9 7 0.8609 -1.1148 -2.0580 10 6 1.2679 -1.5407 -3.4037 11 6 0.0306 -1.9497 -4.2053 12 6 -0.9471 -0.8418 -4.5019 13 1 -1.7571 -0.6387 -3.8171 14 6 -0.8042 -0.0839 -5.6448 15 7 -1.7112 0.8165 -5.9544 16 14 0.6780 -0.3362 -6.7534 17 1 0.3556 -1.3522 -7.7873 18 1 1.0270 0.9478 -7.4131 19 1 1.8296 -0.8044 -5.9414 20 6 0.2026 -3.0420 -5.2627 21 6 -0.5395 -3.3482 -3.9601 22 1 -0.3633 -1.0182 -0.1393 23 1 -0.3633 0.3884 0.9515 24 1 -0.3633 0.6298 -0.8121 25 1 2.2612 0.0374 2.0555 26 1 1.2939 -1.4155 1.6438 27 1 2.3070 -2.8285 -0.9607 28 1 3.7178 -1.9937 -1.6919 29 1 0.1663 -0.3845 -2.1045 30 1 1.9475 -2.3893 -3.3262 31 1 1.7719 -0.7165 -3.9087 32 1 -1.6105 1.3501 -6.7582 33 1 -0.3914 -2.9595 -6.1729 34 1 1.1975 -3.4693 -5.3877 35 1 -0.0328 -3.9770 -3.2281 36 1 -1.6217 -3.4669 -4.0134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397913298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:54 Heat of formation + Delta-G solvation = 12.918635 kcal Electronic energy + Delta-G solvation = -15961.887801 eV Core-core repulsion = 13572.260946 eV Total energy + Delta-G solvation = -2389.626855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.75887 -38.19610 -34.27082 -33.90028 -30.81349 -28.47299 -27.65026 -26.07877 -24.08718 -23.17893 -20.87145 -19.98566 -18.33403 -17.67444 -17.23638 -16.75062 -16.16730 -15.64720 -15.41411 -14.76979 -14.75003 -14.29500 -14.07368 -13.85495 -13.16765 -13.11005 -12.83399 -12.75705 -12.66391 -12.27127 -12.09101 -11.89492 -11.86561 -11.72251 -11.39009 -10.93816 -10.80983 -10.61128 -10.24352 -9.19406 -8.74132 -8.28549 -6.33609 0.93947 1.33312 1.34023 1.37547 1.48339 2.36682 3.06193 3.07176 3.49287 3.57791 3.82941 3.94109 4.17304 4.22356 4.25351 4.45712 4.50020 4.57561 4.66316 4.69530 4.75844 4.77532 4.81442 4.90523 4.92682 5.11651 5.16757 5.17878 5.41537 5.51789 5.54595 5.77003 6.23949 6.37180 6.54168 6.77197 7.36247 8.86546 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.030769 B = 0.007024 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.784561 B = 3985.337129 C = 4196.713365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.085 0.915 4 C -0.040 4.040 5 S -0.338 6.338 6 C -0.042 4.042 7 C 0.083 3.917 8 H 0.036 0.964 9 N -0.670 5.670 10 C 0.101 3.899 11 C -0.016 4.016 12 C -0.479 4.479 13 H 0.038 0.962 14 C 0.023 3.977 15 N -0.947 5.947 16 Si 0.933 3.067 17 H -0.274 1.274 18 H -0.302 1.302 19 H -0.236 1.236 20 C -0.203 4.203 21 C -0.152 4.152 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.351 0.649 30 H 0.068 0.932 31 H 0.009 0.991 32 H 0.263 0.737 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.087 -4.031 11.453 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.104 0.896 4 C -0.188 4.188 5 S -0.112 6.112 6 C -0.191 4.191 7 C -0.029 4.029 8 H 0.054 0.946 9 N -0.305 5.305 10 C -0.028 4.028 11 C -0.017 4.017 12 C -0.517 4.517 13 H 0.056 0.944 14 C -0.174 4.174 15 N -0.587 5.587 16 Si 0.759 3.241 17 H -0.199 1.199 18 H -0.230 1.230 19 H -0.159 1.159 20 C -0.241 4.241 21 C -0.189 4.189 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.063 0.937 25 H 0.139 0.861 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.174 0.826 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.124 -4.767 12.139 16.510 hybrid contribution -0.696 1.370 -2.055 2.566 sum 9.428 -3.398 10.084 14.216 Atomic orbital electron populations 1.21805 0.93366 1.03005 1.01579 1.21642 0.97715 1.00040 0.91587 0.89643 1.24259 0.93936 1.01166 0.99393 1.87908 1.27428 1.77289 1.18560 1.24179 1.00481 1.01050 0.93360 1.22101 0.91418 0.94089 0.95307 0.94617 1.60953 1.11511 1.44391 1.13674 1.21572 0.95104 0.97932 0.88222 1.19277 0.95738 0.88602 0.98126 1.20451 1.10807 1.14338 1.06130 0.94399 1.25742 0.98242 0.94540 0.98912 1.70041 1.36404 1.25433 1.26837 0.85982 0.81996 0.76560 0.79570 1.19923 1.22962 1.15893 1.23008 1.01320 1.06171 0.93579 1.22684 0.98582 0.99696 0.97949 0.91374 0.90892 0.93706 0.86072 0.88258 0.88395 0.88140 0.82624 0.91351 0.97262 0.92779 0.91330 0.88393 0.88150 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 7.69 71.98 0.55 -2.79 16 2 C -0.09 -2.07 3.17 -10.59 -0.03 -2.10 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.04 -0.79 6.91 72.41 0.50 -0.29 16 5 S -0.34 -8.30 23.27 -56.49 -1.31 -9.62 16 6 C -0.04 -1.07 5.99 72.41 0.43 -0.64 16 7 C 0.08 2.29 2.96 45.12 0.13 2.42 16 8 H 0.04 1.07 8.03 -2.38 -0.02 1.05 16 9 N -0.67 -22.30 4.99 -490.50 -2.45 -24.75 16 10 C 0.10 3.76 4.96 86.30 0.43 4.19 16 11 C -0.02 -0.70 1.03 -52.93 -0.05 -0.76 16 12 C -0.48 -25.73 8.79 25.60 0.23 -25.51 16 13 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 14 C 0.02 1.29 5.47 84.66 0.46 1.76 16 15 N -0.95 -57.60 13.96 21.45 0.30 -57.30 16 16 Si 0.93 43.56 24.90 68.60 1.71 45.27 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.24 -10.02 5.76 99.48 0.57 -9.45 16 20 C -0.20 -8.02 7.64 30.60 0.23 -7.79 16 21 C -0.15 -5.80 9.95 30.60 0.30 -5.50 16 22 H 0.07 1.83 7.37 -2.39 -0.02 1.81 16 23 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16 24 H 0.04 1.26 6.86 -2.39 -0.02 1.24 16 25 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 26 H 0.10 1.87 7.85 -2.39 -0.02 1.85 16 27 H 0.10 2.57 8.05 -2.39 -0.02 2.55 16 28 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.35 13.06 5.49 -89.70 -0.49 12.56 16 30 H 0.07 2.25 7.31 -2.39 -0.02 2.23 16 31 H 0.01 0.38 6.56 -2.38 -0.02 0.36 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.07 2.95 7.27 -2.39 -0.02 2.93 16 34 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 35 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 Total: -1.00 -59.86 289.76 1.86 -58.01 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.42 Total: 25.40 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 3.19 Total: -37.01 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -2.15 Total: -82.05 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.71 Total: 45.27 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.31 Total: -9.62 kcal Total: -59.86 1.86 -58.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397913298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.927 kcal (2) G-P(sol) polarization free energy of solvation -59.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds