Wall clock time and date at job start Thu Apr 9 2020 12:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 115.54951 * 2 1 4 4 O 1.21286 * 120.00006 * 149.26397 * 3 2 1 5 5 N 1.34776 * 120.00583 * 329.26558 * 3 2 1 6 6 C 1.46498 * 120.00361 * 185.01862 * 5 3 2 7 7 C 1.53003 * 109.46964 * 175.08213 * 6 5 3 8 8 C 1.50702 * 115.55102 * 56.17278 * 7 6 5 9 9 H 1.07996 * 120.00170 * 219.58479 * 8 7 6 10 10 C 1.37879 * 119.99850 * 39.84975 * 8 7 6 11 11 N 1.31512 * 119.99942 * 11.16723 * 10 8 7 12 12 Si 1.86804 * 120.00037 * 191.15454 * 10 8 7 13 13 H 1.48504 * 109.46799 * 60.00610 * 12 10 8 14 14 H 1.48493 * 109.47062 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47246 * 300.00849 * 12 10 8 16 16 C 1.53000 * 117.51757 * 201.86718 * 7 6 5 17 17 C 1.52992 * 117.49984 * 270.49851 * 7 6 5 18 18 C 1.52999 * 117.49600 * 145.67093 * 2 1 3 19 19 C 1.52998 * 117.51633 * 214.30145 * 2 1 3 20 20 H 1.08999 * 117.50233 * 145.03204 * 19 2 1 21 21 F 1.39900 * 117.49861 * 0.02562 * 19 2 1 22 22 H 1.09002 * 109.47141 * 53.15697 * 1 2 3 23 23 H 1.08997 * 109.47318 * 173.15630 * 1 2 3 24 24 H 1.09003 * 109.47190 * 293.16065 * 1 2 3 25 25 H 0.97004 * 119.99534 * 5.02219 * 5 3 2 26 26 H 1.08992 * 109.47135 * 55.08524 * 6 5 3 27 27 H 1.08998 * 109.47147 * 295.07873 * 6 5 3 28 28 H 0.97003 * 119.99671 * 184.98876 * 11 10 8 29 29 H 1.09002 * 117.49729 * 214.97290 * 16 7 6 30 30 H 1.08999 * 117.49698 * 359.97438 * 16 7 6 31 31 H 1.08997 * 117.50219 * 359.97438 * 17 7 6 32 32 H 1.09006 * 117.50116 * 144.97783 * 17 7 6 33 33 H 1.08996 * 117.49924 * 214.99597 * 18 2 1 34 34 H 1.09001 * 117.50007 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 3.2560 1.5173 0.5368 5 7 1.5655 2.4003 -0.5965 6 6 2.2449 3.6947 -0.6931 7 6 1.3885 4.6600 -1.5151 8 6 -0.0162 4.8723 -1.0123 9 1 -0.8346 4.9497 -1.7127 10 6 -0.2558 4.9732 0.3418 11 7 0.7495 5.1051 1.1794 12 14 -2.0083 4.9229 0.9865 13 1 -2.6389 3.6334 0.6058 14 1 -1.9953 5.0502 2.4660 15 1 -2.7839 6.0453 0.4003 16 6 2.0936 5.8519 -2.1657 17 6 1.6083 4.6855 -3.0290 18 6 2.2364 -1.1208 0.7654 19 6 2.2369 -1.1209 -0.7647 20 1 3.1721 -0.8750 -1.2677 21 9 1.4347 -2.0675 -1.4111 22 1 -0.3633 0.6162 -0.8224 23 1 -0.3634 -1.0203 -0.1225 24 1 -0.3634 0.4042 0.9449 25 1 0.6734 2.2923 -0.9618 26 1 3.2114 3.5623 -1.1792 27 1 2.3938 4.1024 0.3068 28 1 0.5873 5.1034 2.1358 29 1 1.5414 6.7895 -2.2301 30 1 3.1677 5.9487 -2.0078 31 1 2.3633 4.0150 -3.4393 32 1 0.7369 4.8555 -3.6613 33 1 3.1713 -0.8748 1.2688 34 1 1.6111 -1.8583 1.2685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404014571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:59 Heat of formation + Delta-G solvation = -59.119079 kcal Electronic energy + Delta-G solvation = -17714.496705 eV Core-core repulsion = 14755.532884 eV Total energy + Delta-G solvation = -2958.963821 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.73192 -40.96180 -38.66415 -37.10731 -34.91147 -34.16360 -29.85616 -28.00806 -27.26529 -23.87966 -23.40131 -22.93273 -21.20845 -20.27428 -18.77846 -18.01444 -17.09544 -16.85924 -16.68593 -16.13366 -15.88402 -15.47744 -15.36958 -14.70831 -14.28252 -14.02166 -13.61893 -13.51880 -13.34308 -13.27716 -12.94617 -12.80072 -12.71388 -12.33004 -12.06350 -11.49491 -11.42954 -11.11758 -10.98219 -10.68794 -10.60993 -10.12043 -9.71406 -8.08052 -6.21271 1.43036 1.45202 1.47141 1.52443 2.30061 2.42391 2.57745 3.01317 3.14393 3.41268 3.60486 3.73559 3.89726 3.94204 4.23222 4.50263 4.58448 4.71716 4.73547 4.76936 4.78467 4.81189 4.95213 5.08195 5.09919 5.18788 5.28262 5.51168 5.57756 5.74670 5.88601 6.36054 6.73081 6.88169 7.38102 7.43586 8.90768 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.021757 B = 0.008264 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.625771 B = 3387.507379 C = 3943.742718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.186 4.186 3 C 0.534 3.466 4 O -0.593 6.593 5 N -0.683 5.683 6 C 0.168 3.832 7 C 0.010 3.990 8 C -0.507 4.507 9 H 0.060 0.940 10 C 0.037 3.963 11 N -0.894 5.894 12 Si 0.940 3.060 13 H -0.260 1.260 14 H -0.293 1.293 15 H -0.276 1.276 16 C -0.197 4.197 17 C -0.182 4.182 18 C -0.141 4.141 19 C 0.056 3.944 20 H 0.144 0.856 21 F -0.179 7.179 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.407 0.593 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.259 0.741 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -11.087 -3.146 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.189 4.189 3 C 0.321 3.679 4 O -0.476 6.476 5 N -0.331 5.331 6 C 0.044 3.956 7 C 0.009 3.991 8 C -0.544 4.544 9 H 0.078 0.922 10 C -0.165 4.165 11 N -0.531 5.531 12 Si 0.766 3.234 13 H -0.185 1.185 14 H -0.219 1.219 15 H -0.201 1.201 16 C -0.236 4.236 17 C -0.220 4.220 18 C -0.178 4.178 19 C 0.019 3.981 20 H 0.162 0.838 21 F -0.160 7.160 22 H 0.087 0.913 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.243 0.757 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.067 -10.876 -2.629 11.190 hybrid contribution -1.143 0.495 0.326 1.287 sum -1.075 -10.381 -2.303 10.688 Atomic orbital electron populations 1.21291 0.88822 1.04106 1.02968 1.22242 0.97958 0.89106 1.09639 1.19779 0.84669 0.85730 0.77725 1.90615 1.24264 1.85644 1.47084 1.45777 1.20284 1.10164 1.56862 1.20703 0.91756 0.81813 1.01342 1.19200 0.94983 0.95179 0.89700 1.20680 0.91476 1.50436 0.91797 0.92181 1.25544 0.99856 0.93891 0.97180 1.70053 1.32397 1.47929 1.02686 0.85885 0.81401 0.79332 0.76764 1.18474 1.21911 1.20129 1.22902 0.98711 0.94026 1.07929 1.22932 1.02357 1.01830 0.94836 1.23831 1.03550 0.97543 0.92903 1.22167 0.93987 0.88944 0.92976 0.83824 1.92794 1.75563 1.64954 1.82660 0.91348 0.89264 0.91664 0.75674 0.95362 0.91005 0.93168 0.90760 0.90752 0.89597 0.89623 0.86548 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 9.20 71.98 0.66 -2.33 16 2 C -0.19 -5.45 2.63 -52.93 -0.14 -5.59 16 3 C 0.53 21.03 7.41 87.65 0.65 21.68 16 4 O -0.59 -27.31 16.27 -3.05 -0.05 -27.36 16 5 N -0.68 -28.30 5.36 -463.08 -2.48 -30.78 16 6 C 0.17 7.86 4.94 86.38 0.43 8.29 16 7 C 0.01 0.46 1.89 -52.93 -0.10 0.36 16 8 C -0.51 -25.21 8.32 25.60 0.21 -24.99 16 9 H 0.06 2.95 7.84 -2.91 -0.02 2.92 16 10 C 0.04 1.88 5.24 84.66 0.44 2.33 16 11 N -0.89 -48.60 10.99 21.45 0.24 -48.37 16 12 Si 0.94 40.30 29.56 68.60 2.03 42.33 16 13 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 15 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 16 C -0.20 -8.50 9.96 30.59 0.30 -8.19 16 17 C -0.18 -7.16 9.93 30.59 0.30 -6.86 16 18 C -0.14 -3.37 9.75 30.60 0.30 -3.07 16 19 C 0.06 1.37 7.54 30.60 0.23 1.61 16 20 H 0.14 3.33 8.14 -2.39 -0.02 3.31 16 21 F -0.18 -4.45 16.74 44.97 0.75 -3.70 16 22 H 0.07 1.81 6.93 -2.39 -0.02 1.79 16 23 H 0.09 1.92 7.53 -2.39 -0.02 1.91 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.41 15.94 6.40 -92.71 -0.59 15.35 16 26 H 0.03 1.30 8.10 -2.39 -0.02 1.28 16 27 H 0.07 3.94 6.02 -2.39 -0.01 3.93 16 28 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 29 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 33 H 0.12 2.98 7.67 -2.39 -0.02 2.96 16 34 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -58.60 292.83 4.29 -54.31 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.51 Total: 30.34 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 3.29 Total: -16.78 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -2.25 Total: -79.15 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.36 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.75 Total: -3.70 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -58.60 4.29 -54.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404014571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.804 kcal (2) G-P(sol) polarization free energy of solvation -58.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds