Wall clock time and date at job start Thu Apr 9 2020 12:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00396 * 2 1 4 4 H 1.48499 * 109.46916 * 270.00069 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.46918 * 150.00284 * 3 2 1 7 7 C 1.37885 * 119.99346 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00115 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00402 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99742 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99880 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99969 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47401 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.88607 * 308.81051 * 15 14 13 17 17 C 1.54691 * 111.08578 * 72.66940 * 15 14 13 18 18 N 1.46766 * 105.53193 * 143.38036 * 17 15 14 19 19 C 1.34413 * 111.30127 * 343.07423 * 18 17 15 20 20 O 1.21285 * 124.94422 * 180.44579 * 19 18 17 21 21 C 1.51281 * 110.11904 * 0.41169 * 19 18 17 22 22 H 0.97002 * 119.99496 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47558 * 60.00223 * 9 7 2 24 24 H 1.09005 * 109.47537 * 299.99952 * 9 7 2 25 25 H 0.97001 * 119.99190 * 359.97438 * 10 9 7 26 26 H 0.97001 * 120.00273 * 359.97438 * 13 11 10 27 27 H 1.08998 * 109.46958 * 59.99985 * 14 13 11 28 28 H 1.09000 * 109.47107 * 300.00650 * 14 13 11 29 29 H 1.09000 * 110.13899 * 24.40079 * 17 15 14 30 30 H 1.08998 * 110.36834 * 262.47543 * 17 15 14 31 31 H 0.97003 * 124.35056 * 163.06418 * 18 17 15 32 32 H 1.09002 * 110.48898 * 134.92948 * 21 19 18 33 33 H 1.08998 * 110.48664 * 257.43980 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0005 11 6 1.7534 -4.8835 0.0000 12 8 0.5579 -5.1055 0.0000 13 7 2.6291 -5.9079 -0.0005 14 6 2.1407 -7.2891 -0.0005 15 6 3.3305 -8.2508 -0.0005 16 1 4.0340 -7.9987 -0.7941 17 6 4.0336 -8.2663 1.3773 18 7 4.4532 -9.6567 1.5888 19 6 3.8041 -10.4939 0.7615 20 8 3.9552 -11.6969 0.7316 21 6 2.8568 -9.7174 -0.1264 22 1 -0.4849 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6238 -2.5567 0.8903 25 1 3.1564 -3.4356 0.0002 26 1 3.5828 -5.7307 -0.0009 27 1 1.5348 -7.4602 -0.8903 28 1 1.5354 -7.4605 0.8896 29 1 3.3370 -7.9596 2.1576 30 1 4.9020 -7.6076 1.3675 31 1 5.1142 -9.9357 2.2417 32 1 2.9370 -10.0570 -1.1590 33 1 1.8313 -9.8188 0.2289 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227415379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:52 Heat of formation + Delta-G solvation = -76.553076 kcal Electronic energy + Delta-G solvation = -16585.519529 eV Core-core repulsion = 13645.719675 eV Total energy + Delta-G solvation = -2939.799854 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.63526 -39.18093 -37.01904 -34.66252 -34.01404 -32.41657 -31.58153 -28.29014 -27.14904 -25.38059 -22.54503 -21.16276 -20.82496 -20.17616 -18.19111 -17.50509 -16.93376 -15.97544 -15.54977 -15.25497 -15.12804 -14.65837 -14.15605 -13.94249 -13.62475 -13.46953 -13.14708 -12.74936 -12.40469 -11.97620 -11.86508 -11.43719 -11.31601 -10.97634 -10.89668 -10.32249 -10.19617 -9.47008 -9.45163 -9.39005 -8.85498 -8.71360 -7.79742 -6.17221 -4.23923 2.30910 3.03541 3.22965 3.23405 3.30330 3.33223 3.89438 4.00766 4.09032 4.30560 4.37675 4.67342 4.98301 5.10633 5.15530 5.18994 5.19678 5.41318 5.47288 5.73833 5.87331 6.44716 6.66932 6.75210 7.06655 7.47902 7.52002 7.54926 7.87145 7.93661 8.01472 8.73972 8.90412 9.29560 9.45387 10.93020 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.065828 B = 0.003588 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.245926 B = 7801.393754 C = 8092.804589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.692 3.308 12 O -0.600 6.600 13 N -0.759 5.759 14 C 0.152 3.848 15 C -0.113 4.113 16 H 0.099 0.901 17 C 0.101 3.899 18 N -0.733 5.733 19 C 0.521 3.479 20 O -0.539 6.539 21 C -0.149 4.149 22 H 0.266 0.734 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.386 0.614 26 H 0.391 0.609 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.410 0.590 32 H 0.107 0.893 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.090 -14.402 1.336 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.479 6.479 13 N -0.417 5.417 14 C 0.027 3.973 15 C -0.132 4.132 16 H 0.118 0.882 17 C -0.023 4.023 18 N -0.388 5.388 19 C 0.307 3.693 20 O -0.415 6.415 21 C -0.190 4.190 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.218 0.782 26 H 0.224 0.776 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.248 0.752 32 H 0.125 0.875 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.750 -15.025 1.240 17.431 hybrid contribution 1.629 1.122 0.322 2.004 sum 10.379 -13.903 1.561 17.420 Atomic orbital electron populations 1.69979 1.06096 1.27289 1.48887 1.24949 0.94916 0.99413 0.94765 0.86412 0.79584 0.82669 0.78197 1.20488 1.21021 1.19787 1.21223 0.93250 0.90446 1.53179 0.91957 1.18985 0.87780 0.81058 0.97636 1.45723 1.10792 1.04435 1.77143 1.16141 0.85176 0.81066 0.78428 1.90885 1.14243 1.84228 1.58549 1.45125 1.08820 1.04993 1.82778 1.21039 0.94043 0.79307 1.02954 1.22459 0.98376 0.94682 0.97683 0.88239 1.22294 1.00161 0.82463 0.97382 1.46263 1.43899 1.08676 1.39973 1.20906 0.80824 0.86664 0.80905 1.90764 1.66824 1.13624 1.70332 1.22340 1.00743 0.93905 1.01975 0.92443 0.95739 0.95714 0.78172 0.77570 0.90989 0.91321 0.90241 0.89885 0.75178 0.87500 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -14.44 9.28 -34.44 -0.32 -14.75 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.27 6.95 5.43 -5.20 -0.03 6.93 16 10 N -0.73 -14.77 5.55 -66.42 -0.37 -15.13 16 11 C 0.69 13.28 8.57 -86.93 -0.74 12.53 16 12 O -0.60 -14.34 16.34 5.29 0.09 -14.26 16 13 N -0.76 -9.49 5.50 -65.23 -0.36 -9.85 16 14 C 0.15 1.55 4.99 -4.04 -0.02 1.53 16 15 C -0.11 -0.76 3.17 -88.88 -0.28 -1.04 16 16 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 17 C 0.10 0.63 7.31 -3.01 -0.02 0.60 16 18 N -0.73 -5.45 6.24 -59.09 -0.37 -5.82 16 19 C 0.52 5.27 8.43 -10.86 -0.09 5.18 16 20 O -0.54 -7.79 18.03 5.55 0.10 -7.69 16 21 C -0.15 -1.11 6.41 -26.74 -0.17 -1.28 16 22 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.39 6.55 8.34 -40.82 -0.34 6.21 16 26 H 0.39 3.61 8.49 -40.82 -0.35 3.27 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 29 H 0.08 0.53 7.74 -51.93 -0.40 0.13 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.41 2.52 8.96 -40.82 -0.37 2.15 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.77 7.90 -51.93 -0.41 0.36 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -35.28 288.95 -6.96 -42.24 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.35 Total: 4.42 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -1.78 Total: 11.32 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.36 Total: -55.86 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.19 Total: -21.95 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.28 -6.96 -42.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227415379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.313 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds