Wall clock time and date at job start Thu Apr 9 2020 12:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00396 * 2 1 4 4 H 1.48499 * 109.46916 * 270.00069 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.46918 * 150.00284 * 3 2 1 7 7 C 1.37885 * 119.99346 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00115 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00402 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99742 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99880 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99969 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47401 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.88607 * 308.81051 * 15 14 13 17 17 C 1.54691 * 111.08578 * 72.66940 * 15 14 13 18 18 N 1.46766 * 105.53193 * 143.38036 * 17 15 14 19 19 C 1.34413 * 111.30127 * 343.07423 * 18 17 15 20 20 O 1.21285 * 124.94422 * 180.44579 * 19 18 17 21 21 C 1.51281 * 110.11904 * 0.41169 * 19 18 17 22 22 H 0.97002 * 119.99496 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47558 * 60.00223 * 9 7 2 24 24 H 1.09005 * 109.47537 * 299.99952 * 9 7 2 25 25 H 0.97001 * 119.99190 * 359.97438 * 10 9 7 26 26 H 0.97001 * 120.00273 * 359.97438 * 13 11 10 27 27 H 1.08998 * 109.46958 * 59.99985 * 14 13 11 28 28 H 1.09000 * 109.47107 * 300.00650 * 14 13 11 29 29 H 1.09000 * 110.13899 * 24.40079 * 17 15 14 30 30 H 1.08998 * 110.36834 * 262.47543 * 17 15 14 31 31 H 0.97003 * 124.35056 * 163.06418 * 18 17 15 32 32 H 1.09002 * 110.48898 * 134.92948 * 21 19 18 33 33 H 1.08998 * 110.48664 * 257.43980 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0005 11 6 1.7534 -4.8835 0.0000 12 8 0.5579 -5.1055 0.0000 13 7 2.6291 -5.9079 -0.0005 14 6 2.1407 -7.2891 -0.0005 15 6 3.3305 -8.2508 -0.0005 16 1 4.0340 -7.9987 -0.7941 17 6 4.0336 -8.2663 1.3773 18 7 4.4532 -9.6567 1.5888 19 6 3.8041 -10.4939 0.7615 20 8 3.9552 -11.6969 0.7316 21 6 2.8568 -9.7174 -0.1264 22 1 -0.4849 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6238 -2.5567 0.8903 25 1 3.1564 -3.4356 0.0002 26 1 3.5828 -5.7307 -0.0009 27 1 1.5348 -7.4602 -0.8903 28 1 1.5354 -7.4605 0.8896 29 1 3.3370 -7.9596 2.1576 30 1 4.9020 -7.6076 1.3675 31 1 5.1142 -9.9357 2.2417 32 1 2.9370 -10.0570 -1.1590 33 1 1.8313 -9.8188 0.2289 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227415379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:51 Heat of formation + Delta-G solvation = -107.094894 kcal Electronic energy + Delta-G solvation = -16586.843922 eV Core-core repulsion = 13645.719675 eV Total energy + Delta-G solvation = -2941.124247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.41400 -40.64882 -37.92900 -36.17618 -35.51964 -34.29848 -32.52191 -29.52481 -28.50662 -26.41516 -24.42842 -21.97961 -21.75023 -21.43358 -19.72107 -18.34721 -18.02330 -17.65467 -16.95410 -16.47845 -16.29517 -15.98241 -15.23914 -15.16464 -14.91988 -14.42348 -14.21089 -13.99258 -13.96815 -13.40959 -13.17996 -12.84372 -12.68540 -12.18895 -12.14090 -11.98357 -11.43168 -11.25232 -10.97500 -10.76650 -10.20302 -10.10755 -9.50911 -8.24956 -6.40829 1.46544 1.48878 1.53923 1.59789 1.93856 2.32824 2.42090 2.45178 3.10471 3.32421 3.41182 3.63335 3.82230 4.09421 4.32885 4.61441 4.66252 4.76840 4.80623 4.95322 5.12903 5.20242 5.32956 5.53701 5.60251 5.74043 5.83194 5.90297 6.00600 6.34542 6.71887 7.22704 7.29020 7.40384 7.81087 8.87348 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.065828 B = 0.003588 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.245926 B = 7801.393754 C = 8092.804589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.690 3.310 12 O -0.651 6.651 13 N -0.729 5.729 14 C 0.151 3.849 15 C -0.095 4.095 16 H 0.121 0.879 17 C 0.100 3.900 18 N -0.721 5.721 19 C 0.514 3.486 20 O -0.590 6.590 21 C -0.145 4.145 22 H 0.268 0.732 23 H -0.016 1.016 24 H -0.015 1.015 25 H 0.406 0.594 26 H 0.413 0.587 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.117 0.883 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.747 -13.813 1.314 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.390 3.610 12 O -0.534 6.534 13 N -0.387 5.387 14 C 0.026 3.974 15 C -0.114 4.114 16 H 0.139 0.861 17 C -0.024 4.024 18 N -0.376 5.376 19 C 0.301 3.699 20 O -0.471 6.471 21 C -0.185 4.185 22 H 0.077 0.923 23 H 0.002 0.998 24 H 0.003 0.997 25 H 0.241 0.759 26 H 0.250 0.750 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.256 0.744 32 H 0.136 0.864 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.511 -14.459 1.234 18.523 hybrid contribution 0.782 0.864 0.351 1.217 sum 12.293 -13.595 1.585 18.397 Atomic orbital electron populations 1.70145 1.08283 1.28481 1.50139 1.26054 0.95744 1.03851 0.94016 0.85162 0.78520 0.77042 0.78502 1.19740 1.21210 1.17790 1.21623 0.94369 0.90485 1.52588 0.89677 1.18385 0.88159 0.83434 0.93921 1.45268 1.10870 1.03864 1.77700 1.16325 0.85131 0.81644 0.77935 1.90855 1.16959 1.84984 1.60612 1.44815 1.09087 1.04349 1.80448 1.21169 0.95560 0.78294 1.02356 1.22306 0.97163 0.93022 0.98933 0.86067 1.22435 1.01227 0.81947 0.96767 1.46287 1.43152 1.08929 1.39184 1.21305 0.81027 0.86205 0.81347 1.90738 1.68554 1.15819 1.71993 1.22337 1.00334 0.93744 1.02130 0.92329 0.99771 0.99672 0.75890 0.74992 0.91733 0.92067 0.90369 0.87164 0.74417 0.86427 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 2 C 0.00 0.15 5.46 84.66 0.46 0.62 16 3 Si 0.98 41.27 29.54 68.60 2.03 43.29 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.55 -29.19 9.28 25.60 0.24 -28.95 16 8 H 0.09 4.01 7.60 -2.91 -0.02 3.98 16 9 C 0.28 15.26 5.43 85.63 0.46 15.73 16 10 N -0.72 -28.91 5.55 -482.30 -2.68 -31.59 16 11 C 0.69 26.10 8.57 179.06 1.53 27.63 16 12 O -0.65 -31.82 16.34 -3.99 -0.07 -31.89 16 13 N -0.73 -16.50 5.50 -478.55 -2.63 -19.13 16 14 C 0.15 2.76 4.99 86.38 0.43 3.19 16 15 C -0.10 -0.98 3.17 -9.66 -0.03 -1.01 16 16 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 17 C 0.10 0.90 7.31 86.90 0.64 1.53 16 18 N -0.72 -9.09 6.24 -459.44 -2.87 -11.95 16 19 C 0.51 9.70 8.43 87.90 0.74 10.44 16 20 O -0.59 -16.98 18.03 -3.05 -0.05 -17.04 16 21 C -0.14 -1.87 6.41 30.59 0.20 -1.67 16 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 23 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 24 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 25 H 0.41 12.87 8.34 -92.71 -0.77 12.10 16 26 H 0.41 6.02 8.49 -92.71 -0.79 5.23 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.27 7.93 -2.39 -0.02 1.25 16 29 H 0.08 0.80 7.74 -2.39 -0.02 0.78 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.42 4.26 8.96 -92.71 -0.83 3.43 16 32 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 1.43 7.90 -2.39 -0.02 1.41 16 Total: -1.00 -79.83 288.95 -2.55 -82.38 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -1.24 Total: 13.62 kcal Atomic # 6 Polarization: 22.83 SS G_CDS: 4.67 Total: 27.50 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -7.89 Total: -117.87 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -0.12 Total: -48.92 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -79.83 -2.55 -82.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227415379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.717 kcal (2) G-P(sol) polarization free energy of solvation -79.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds