Wall clock time and date at job start Thu Apr 9 2020 12:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46782 * 2 1 4 4 C 1.50707 * 109.46764 * 180.02562 * 3 2 1 5 5 C 1.33055 * 119.99896 * 124.99803 * 4 3 2 6 6 C 1.47325 * 119.99705 * 179.97438 * 5 4 3 7 7 C 1.40202 * 119.52604 * 0.02562 * 6 5 4 8 8 C 1.35926 * 121.16923 * 179.97438 * 7 6 5 9 9 C 1.41087 * 120.12989 * 359.97438 * 8 7 6 10 10 C 1.40367 * 120.46597 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00419 * 205.45254 * 10 9 8 12 12 C 1.40323 * 119.99772 * 25.45775 * 10 9 8 13 13 N 1.30628 * 119.99581 * 16.92191 * 12 10 9 14 14 Si 1.86798 * 119.99922 * 196.92536 * 12 10 9 15 15 H 1.48504 * 109.46962 * 265.17693 * 14 12 10 16 16 H 1.48494 * 109.47074 * 25.18108 * 14 12 10 17 17 H 1.48502 * 109.46995 * 145.17871 * 14 12 10 18 18 C 1.46672 * 119.07063 * 0.24940 * 9 8 7 19 19 C 1.43204 * 120.55595 * 179.74406 * 18 9 8 20 20 N 9.35284 * 143.60484 * 317.45936 * 2 1 3 21 21 C 1.38997 * 118.89188 * 359.47164 * 18 9 8 22 22 H 1.08997 * 109.47697 * 59.99786 * 1 2 3 23 23 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46895 * 299.99710 * 1 2 3 25 25 H 1.08999 * 109.46387 * 240.00296 * 2 1 3 26 26 H 1.08994 * 109.47212 * 120.00250 * 2 1 3 27 27 H 1.08992 * 109.46963 * 60.00424 * 3 2 1 28 28 H 1.09004 * 109.47234 * 299.99651 * 3 2 1 29 29 H 1.07993 * 119.99704 * 304.99792 * 4 3 2 30 30 H 1.08006 * 120.00166 * 0.02562 * 5 4 3 31 31 H 1.07996 * 119.41907 * 0.02562 * 7 6 5 32 32 H 1.07995 * 119.93184 * 180.02562 * 8 7 6 33 33 H 0.97006 * 119.99335 * 179.97438 * 13 12 10 34 34 H 1.08002 * 120.10582 * 180.24149 * 21 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2119 2.1035 -0.9447 6 6 5.6851 2.1040 -0.9450 7 6 6.3765 1.4041 0.0540 8 6 7.7352 1.3817 0.0853 9 6 8.4777 2.0693 -0.8977 10 6 9.8810 2.0514 -0.8717 11 1 10.4399 2.8577 -1.3232 12 6 10.5578 0.9856 -0.2592 13 7 9.9279 -0.1315 -0.0108 14 14 12.3593 1.1645 0.2012 15 1 13.2055 0.6154 -0.8887 16 1 12.6790 2.6008 0.4003 17 1 12.6254 0.4193 1.4578 18 6 7.7627 2.8083 -1.9437 19 6 8.4846 3.5218 -2.9539 20 7 9.0586 4.0889 -3.7521 21 6 6.3728 2.7997 -1.9414 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 4.0873 0.9060 0.7652 30 1 3.6715 2.6405 -1.7104 31 1 5.8196 0.8727 0.8115 32 1 8.2473 0.8358 0.8638 33 1 10.3959 -0.8683 0.4123 34 1 5.8265 3.3339 -2.7047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242253857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:08 Heat of formation + Delta-G solvation = 29.153985 kcal Electronic energy + Delta-G solvation = -15543.438283 eV Core-core repulsion = 13019.071494 eV Total energy + Delta-G solvation = -2524.366789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -37.96811 -35.91887 -35.10805 -34.30693 -32.22806 -29.93516 -29.61192 -26.92727 -24.66983 -22.43346 -21.64823 -20.60669 -19.28286 -17.76835 -16.61573 -15.50898 -15.06938 -14.62730 -14.35684 -13.75246 -13.28099 -12.96654 -12.91590 -12.72311 -12.35517 -12.04605 -11.87838 -11.66642 -11.60197 -11.34530 -11.24620 -11.15379 -10.89386 -10.82984 -10.55939 -10.45454 -9.90701 -9.72868 -9.62663 -8.85777 -7.77413 -7.33184 -7.12622 -4.72631 2.03171 2.29786 2.80565 2.87256 2.93833 3.42777 3.63377 3.89336 4.28001 4.41878 5.04602 5.13931 5.25486 5.37110 5.44611 5.58211 5.78082 5.79992 5.91190 5.94296 5.97230 6.12456 6.24340 6.28748 6.37810 6.49105 6.61317 6.82089 6.90232 7.14728 7.24504 7.32300 7.60811 7.66306 7.82099 7.93474 8.18536 8.34895 8.52731 8.79662 9.65087 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.005102 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.136015 B = 5486.685845 C = 6384.053445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.077 4.077 4 C -0.223 4.223 5 C -0.062 4.062 6 C -0.210 4.210 7 C -0.058 4.058 8 C -0.168 4.168 9 C 0.155 3.845 10 C -0.420 4.420 11 H 0.088 0.912 12 C 0.074 3.926 13 N -0.755 5.755 14 Si 0.916 3.084 15 H -0.264 1.264 16 H -0.254 1.254 17 H -0.269 1.269 18 C -0.191 4.191 19 C 0.301 3.699 20 N -0.510 5.510 21 C -0.005 4.005 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.292 0.708 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 -2.212 4.285 10.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.115 4.115 4 C -0.242 4.242 5 C -0.081 4.081 6 C -0.211 4.211 7 C -0.077 4.077 8 C -0.187 4.187 9 C 0.149 3.851 10 C -0.446 4.446 11 H 0.106 0.894 12 C -0.150 4.150 13 N -0.376 5.376 14 Si 0.739 3.261 15 H -0.189 1.189 16 H -0.178 1.178 17 H -0.193 1.193 18 C -0.197 4.197 19 C -0.009 4.009 20 N -0.189 5.189 21 C -0.026 4.026 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.917 -1.590 3.136 8.663 hybrid contribution 0.568 -0.348 0.493 0.828 sum -7.349 -1.938 3.629 8.422 Atomic orbital electron populations 1.21802 0.96496 1.01174 1.01493 1.21500 0.94869 0.97368 1.02137 1.20521 0.93675 0.96099 1.01159 1.22987 0.94304 1.05202 1.01667 1.21556 0.92923 0.96852 0.96720 1.18086 0.91481 1.10017 1.01533 1.20602 0.94393 0.96364 0.96375 1.20908 0.92601 1.04786 1.00433 1.18493 0.92509 0.86906 0.87196 1.19830 0.91944 1.04884 1.27988 0.89438 1.26182 1.02163 0.94011 0.92626 1.69716 1.39317 1.02212 1.26350 0.86123 0.80307 0.80559 0.79115 1.18907 1.17780 1.19319 1.16801 0.91180 1.13884 0.97862 1.25744 0.91878 0.91346 0.91926 1.80975 1.09895 1.14527 1.13470 1.20655 0.91714 0.94756 0.95442 0.92970 0.93118 0.92995 0.91986 0.92167 0.92258 0.92440 0.87501 0.88479 0.88446 0.85778 0.89633 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 3 C -0.08 -0.98 5.67 -27.88 -0.16 -1.13 16 4 C -0.22 -3.46 8.94 -36.11 -0.32 -3.79 16 5 C -0.06 -1.07 9.49 -37.69 -0.36 -1.43 16 6 C -0.21 -4.23 5.87 -104.94 -0.62 -4.85 16 7 C -0.06 -1.22 9.27 -39.67 -0.37 -1.58 16 8 C -0.17 -3.85 8.62 -39.33 -0.34 -4.19 16 9 C 0.15 3.74 5.73 -104.61 -0.60 3.14 16 10 C -0.42 -10.19 8.55 -38.00 -0.32 -10.52 16 11 H 0.09 2.15 7.38 -52.49 -0.39 1.76 16 12 C 0.07 1.66 5.16 -17.28 -0.09 1.57 16 13 N -0.75 -17.06 10.96 55.57 0.61 -16.45 16 14 Si 0.92 16.89 29.59 -169.99 -5.03 11.86 16 15 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 16 H -0.25 -4.75 7.11 56.52 0.40 -4.35 16 17 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 18 C -0.19 -4.43 5.93 -104.29 -0.62 -5.05 16 19 C 0.30 7.11 14.29 -22.51 -0.32 6.79 16 20 N -0.51 -12.34 18.53 41.80 0.77 -11.57 16 21 C 0.00 -0.10 9.47 -38.78 -0.37 -0.47 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 29 H 0.11 1.70 5.96 -52.49 -0.31 1.39 16 30 H 0.10 1.51 7.87 -52.48 -0.41 1.09 16 31 H 0.10 1.82 6.05 -52.49 -0.32 1.51 16 32 H 0.12 2.87 6.20 -52.49 -0.33 2.54 16 33 H 0.29 5.88 8.29 -40.82 -0.34 5.54 16 34 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 299.69 15.07 4.52 4.52 Total: -1.00 -24.74 299.69 -7.66 -32.40 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.26 Total: 3.34 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -4.27 Total: -24.10 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 1.38 Total: -28.01 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -24.74 -7.66 -32.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242253857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.551 kcal (2) G-P(sol) polarization free energy of solvation -24.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds