Wall clock time and date at job start Thu Apr 9 2020 12:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46782 * 2 1 4 4 C 1.50707 * 109.46764 * 180.02562 * 3 2 1 5 5 C 1.33055 * 119.99896 * 124.99803 * 4 3 2 6 6 C 1.47325 * 119.99705 * 179.97438 * 5 4 3 7 7 C 1.40202 * 119.52604 * 0.02562 * 6 5 4 8 8 C 1.35926 * 121.16923 * 179.97438 * 7 6 5 9 9 C 1.41087 * 120.12989 * 359.97438 * 8 7 6 10 10 C 1.40367 * 120.46597 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00419 * 205.45254 * 10 9 8 12 12 C 1.40323 * 119.99772 * 25.45775 * 10 9 8 13 13 N 1.30628 * 119.99581 * 16.92191 * 12 10 9 14 14 Si 1.86798 * 119.99922 * 196.92536 * 12 10 9 15 15 H 1.48504 * 109.46962 * 265.17693 * 14 12 10 16 16 H 1.48494 * 109.47074 * 25.18108 * 14 12 10 17 17 H 1.48502 * 109.46995 * 145.17871 * 14 12 10 18 18 C 1.46672 * 119.07063 * 0.24940 * 9 8 7 19 19 C 1.43204 * 120.55595 * 179.74406 * 18 9 8 20 20 N 9.35284 * 143.60484 * 317.45936 * 2 1 3 21 21 C 1.38997 * 118.89188 * 359.47164 * 18 9 8 22 22 H 1.08997 * 109.47697 * 59.99786 * 1 2 3 23 23 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46895 * 299.99710 * 1 2 3 25 25 H 1.08999 * 109.46387 * 240.00296 * 2 1 3 26 26 H 1.08994 * 109.47212 * 120.00250 * 2 1 3 27 27 H 1.08992 * 109.46963 * 60.00424 * 3 2 1 28 28 H 1.09004 * 109.47234 * 299.99651 * 3 2 1 29 29 H 1.07993 * 119.99704 * 304.99792 * 4 3 2 30 30 H 1.08006 * 120.00166 * 0.02562 * 5 4 3 31 31 H 1.07996 * 119.41907 * 0.02562 * 7 6 5 32 32 H 1.07995 * 119.93184 * 180.02562 * 8 7 6 33 33 H 0.97006 * 119.99335 * 179.97438 * 13 12 10 34 34 H 1.08002 * 120.10582 * 180.24149 * 21 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2119 2.1035 -0.9447 6 6 5.6851 2.1040 -0.9450 7 6 6.3765 1.4041 0.0540 8 6 7.7352 1.3817 0.0853 9 6 8.4777 2.0693 -0.8977 10 6 9.8810 2.0514 -0.8717 11 1 10.4399 2.8577 -1.3232 12 6 10.5578 0.9856 -0.2592 13 7 9.9279 -0.1315 -0.0108 14 14 12.3593 1.1645 0.2012 15 1 13.2055 0.6154 -0.8887 16 1 12.6790 2.6008 0.4003 17 1 12.6254 0.4193 1.4578 18 6 7.7627 2.8083 -1.9437 19 6 8.4846 3.5218 -2.9539 20 7 9.0586 4.0889 -3.7521 21 6 6.3728 2.7997 -1.9414 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 4.0873 0.9060 0.7652 30 1 3.6715 2.6405 -1.7104 31 1 5.8196 0.8727 0.8115 32 1 8.2473 0.8358 0.8638 33 1 10.3959 -0.8683 0.4123 34 1 5.8265 3.3339 -2.7047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242253857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:07 Heat of formation + Delta-G solvation = 20.232752 kcal Electronic energy + Delta-G solvation = -15543.825137 eV Core-core repulsion = 13019.071494 eV Total energy + Delta-G solvation = -2524.753643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.64015 -37.33303 -36.76887 -35.81478 -33.58513 -31.65147 -31.08682 -28.31076 -26.05080 -24.14337 -22.93310 -21.91186 -20.67190 -19.48715 -18.23630 -17.13073 -16.37016 -15.96781 -15.79650 -15.20540 -14.62187 -14.58991 -14.36858 -14.03277 -13.78961 -13.61825 -13.51173 -13.19089 -13.10897 -12.80919 -12.73710 -12.41577 -12.29255 -11.95959 -11.84014 -11.62040 -11.35069 -11.33290 -11.21947 -10.37001 -9.49823 -8.97533 -8.73690 -6.48734 0.38662 0.65340 1.33221 1.36732 1.49257 1.88806 2.02053 2.11731 2.50574 2.71060 3.56746 3.70119 4.09456 4.21120 4.33176 4.35287 4.41420 4.65224 4.72309 4.84106 4.89774 4.97153 5.02990 5.12466 5.13918 5.22023 5.31607 5.39913 5.47377 5.55616 5.75123 5.79668 5.94680 6.07930 6.10519 6.38454 6.45245 6.60013 6.78956 6.94728 8.02717 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.005102 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.136015 B = 5486.685845 C = 6384.053445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.078 4.078 4 C -0.193 4.193 5 C -0.091 4.091 6 C -0.199 4.199 7 C -0.059 4.059 8 C -0.183 4.183 9 C 0.131 3.869 10 C -0.457 4.457 11 H 0.071 0.929 12 C 0.044 3.956 13 N -0.779 5.779 14 Si 0.980 3.020 15 H -0.264 1.264 16 H -0.262 1.262 17 H -0.250 1.250 18 C -0.212 4.212 19 C 0.306 3.694 20 N -0.529 5.529 21 C -0.011 4.011 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.303 0.697 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 -2.749 5.140 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.115 4.115 4 C -0.211 4.211 5 C -0.109 4.109 6 C -0.201 4.201 7 C -0.078 4.078 8 C -0.202 4.202 9 C 0.126 3.874 10 C -0.483 4.483 11 H 0.090 0.910 12 C -0.178 4.178 13 N -0.401 5.401 14 Si 0.799 3.201 15 H -0.188 1.188 16 H -0.186 1.186 17 H -0.174 1.174 18 C -0.218 4.218 19 C -0.003 4.003 20 N -0.209 5.209 21 C -0.032 4.032 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.797 -2.133 3.991 10.791 hybrid contribution 0.881 -0.230 0.285 0.954 sum -8.916 -2.363 4.275 10.167 Atomic orbital electron populations 1.21772 0.94846 1.01965 1.02100 1.21484 0.96354 0.96267 1.01786 1.20599 0.91327 0.97280 1.02336 1.23322 0.96172 1.01942 0.99691 1.21582 0.91156 0.99351 0.98767 1.18467 0.93366 1.08020 1.00214 1.20877 0.93846 0.96106 0.96996 1.20897 0.93494 1.05465 1.00347 1.18773 0.92986 0.87744 0.87910 1.19902 0.92368 1.05743 1.30334 0.91034 1.26832 1.05726 0.93191 0.92027 1.69705 1.40986 1.02736 1.26682 0.85207 0.75404 0.80078 0.79391 1.18837 1.18553 1.17353 1.17015 0.92259 1.14644 0.97916 1.25931 0.91557 0.91046 0.91771 1.80947 1.10271 1.15411 1.14223 1.20913 0.90893 0.95055 0.96315 0.92566 0.92325 0.92213 0.92820 0.92141 0.90770 0.91554 0.87909 0.86546 0.86292 0.86535 0.88523 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.12 -2.39 5.92 30.60 0.18 -2.20 16 3 C -0.08 -1.69 5.67 29.85 0.17 -1.52 16 4 C -0.19 -5.38 8.94 24.53 0.22 -5.16 16 5 C -0.09 -2.86 9.49 23.50 0.22 -2.64 16 6 C -0.20 -7.77 5.87 -20.07 -0.12 -7.89 16 7 C -0.06 -2.43 9.27 22.21 0.21 -2.23 16 8 C -0.18 -8.51 8.62 22.43 0.19 -8.31 16 9 C 0.13 6.55 5.73 -19.86 -0.11 6.44 16 10 C -0.46 -23.04 8.55 23.30 0.20 -22.84 16 11 H 0.07 3.70 7.38 -2.91 -0.02 3.68 16 12 C 0.04 2.01 5.16 85.38 0.44 2.45 16 13 N -0.78 -35.68 10.96 21.89 0.24 -35.44 16 14 Si 0.98 34.92 29.59 68.60 2.03 36.95 16 15 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 16 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 17 H -0.25 -8.08 7.11 99.48 0.71 -7.38 16 18 C -0.21 -10.02 5.93 -19.65 -0.12 -10.14 16 19 C 0.31 14.80 14.29 88.34 1.26 16.06 16 20 N -0.53 -26.10 18.53 18.99 0.35 -25.75 16 21 C -0.01 -0.46 9.47 22.79 0.22 -0.24 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.35 7.82 -2.38 -0.02 1.34 16 29 H 0.10 2.96 5.96 -2.91 -0.02 2.95 16 30 H 0.12 3.24 7.87 -2.91 -0.02 3.22 16 31 H 0.12 4.25 6.05 -2.91 -0.02 4.24 16 32 H 0.12 5.51 6.20 -2.91 -0.02 5.50 16 33 H 0.30 12.19 8.29 -92.70 -0.77 11.42 16 34 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -53.41 299.69 7.39 -46.02 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.10 Total: 18.09 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.67 Total: -39.86 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.59 Total: -61.19 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Total: -53.41 7.39 -46.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242253857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.253 kcal (2) G-P(sol) polarization free energy of solvation -53.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds