Wall clock time and date at job start Thu Apr 9 2020 12:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00132 * 3 2 1 5 5 H 1.48500 * 109.46946 * 30.00180 * 3 2 1 6 6 H 1.48495 * 109.47195 * 149.99780 * 3 2 1 7 7 C 1.37881 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99569 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47738 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47128 * 179.97438 * 11 10 9 13 13 C 1.39336 * 120.03313 * 270.19959 * 12 11 10 14 14 N 1.31090 * 121.74372 * 180.24753 * 13 12 11 15 15 C 1.33677 * 121.32490 * 359.79232 * 14 13 12 16 16 C 1.40602 * 121.07846 * 179.97438 * 15 14 13 17 17 C 1.36077 * 119.74756 * 180.02562 * 16 15 14 18 18 C 1.39365 * 121.06544 * 359.95101 * 17 16 15 19 19 C 1.36135 * 120.86733 * 0.02562 * 18 17 16 20 20 C 1.40427 * 119.61742 * 359.97438 * 19 18 17 21 21 C 1.36576 * 120.03152 * 90.00316 * 12 11 10 22 22 H 0.96996 * 119.99474 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47826 * 59.99522 * 9 7 2 24 24 H 1.09002 * 109.46975 * 299.99464 * 9 7 2 25 25 H 1.09007 * 109.47065 * 59.99417 * 10 9 7 26 26 H 1.09001 * 109.47145 * 299.99781 * 10 9 7 27 27 H 1.09003 * 109.46563 * 59.99928 * 11 10 9 28 28 H 1.09001 * 109.46940 * 300.00293 * 11 10 9 29 29 H 1.07995 * 119.12636 * 0.02562 * 13 12 11 30 30 H 1.07996 * 120.12773 * 0.02822 * 16 15 14 31 31 H 1.07995 * 119.46463 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.56330 * 180.02562 * 18 17 16 33 33 H 1.08008 * 120.18851 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.92819 * 0.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4804 -4.9872 -0.0020 12 6 2.4597 -6.1325 -0.0024 13 6 2.9162 -6.6593 -1.2088 14 7 3.7641 -7.6583 -1.2483 15 6 4.2340 -8.2158 -0.1279 16 6 5.1429 -9.2873 -0.1763 17 6 5.6035 -9.8349 0.9812 18 6 5.1897 -9.3502 2.2206 19 6 4.3111 -8.3138 2.3073 20 6 3.8151 -7.7244 1.1333 21 6 2.9038 -6.6525 1.1799 22 1 -0.4849 0.8401 -0.0004 23 1 0.6248 -2.5563 -0.8918 24 1 0.6242 -2.5575 0.8881 25 1 2.8714 -3.6047 0.8891 26 1 2.8726 -3.6040 -0.8910 27 1 0.8541 -5.0447 -0.8923 28 1 0.8533 -5.0450 0.8877 29 1 2.5592 -6.2358 -2.1359 30 1 5.4744 -9.6744 -1.1284 31 1 6.3012 -10.6581 0.9387 32 1 5.5710 -9.8026 3.1241 33 1 3.9975 -7.9472 3.2736 34 1 2.5627 -6.2547 2.1242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250062954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:38 Heat of formation + Delta-G solvation = 26.252600 kcal Electronic energy + Delta-G solvation = -15656.935738 eV Core-core repulsion = 13132.443136 eV Total energy + Delta-G solvation = -2524.492602 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79775 -37.41583 -34.99818 -33.36048 -32.20363 -30.32774 -29.97594 -26.88643 -24.34431 -23.88471 -22.15389 -21.86769 -20.15423 -18.01334 -17.26353 -16.50583 -16.05889 -14.76538 -14.56714 -14.40035 -14.31881 -13.83626 -13.73619 -13.03552 -12.92474 -12.48235 -12.14645 -11.68697 -11.65660 -11.49268 -11.19085 -10.83248 -10.81236 -10.52300 -10.27863 -9.74964 -9.53475 -9.27207 -9.10737 -8.58490 -8.35558 -8.19723 -6.00782 -4.03076 0.40798 0.84454 2.02349 2.91837 3.31737 3.37977 3.41558 4.13475 4.31962 4.45763 4.58323 4.75095 4.81911 4.99423 5.09712 5.12928 5.28803 5.35078 5.42083 5.73687 5.77242 5.93739 6.00408 6.05400 6.13013 6.28998 6.30994 6.40854 6.58590 6.72098 6.83307 6.86173 7.09222 7.66397 7.80098 7.96072 7.99250 8.42014 9.04076 9.61170 11.10469 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.043337 B = 0.003963 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.948211 B = 7063.118733 C = 7196.092752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.104 4.104 11 C -0.082 4.082 12 C -0.116 4.116 13 C 0.141 3.859 14 N -0.479 5.479 15 C 0.114 3.886 16 C -0.091 4.091 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.096 4.096 20 C -0.097 4.097 21 C -0.067 4.067 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -18.370 3.023 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.120 4.120 12 C -0.118 4.118 13 C -0.032 4.032 14 N -0.186 5.186 15 C -0.007 4.007 16 C -0.110 4.110 17 C -0.131 4.131 18 C -0.141 4.141 19 C -0.114 4.114 20 C -0.099 4.099 21 C -0.093 4.093 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.178 0.822 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.761 -18.674 2.257 20.348 hybrid contribution 0.153 1.365 0.818 1.599 sum 7.914 -17.309 3.075 19.280 Atomic orbital electron populations 1.69962 1.06040 1.26597 1.50927 1.25022 0.94845 0.99242 0.95333 0.86607 0.79861 0.83496 0.78135 1.20639 1.21215 1.19898 1.21261 0.93047 0.91115 1.50509 0.92742 1.19119 0.93963 0.91240 0.97317 1.21656 0.99051 0.92824 1.00614 1.20795 0.95852 0.92237 1.03102 1.20971 0.99142 0.98011 0.93681 1.22997 0.91402 0.90790 0.97980 1.68054 1.10661 1.09953 1.29932 1.18901 0.97164 0.96337 0.88273 1.20780 0.96256 0.94897 0.99076 1.20842 0.99985 1.00054 0.92188 1.20872 0.98157 0.97228 0.97841 1.21011 0.97071 0.96113 0.97242 1.18878 0.98940 0.97633 0.94469 1.21397 0.94893 0.93935 0.99028 0.93004 0.96452 0.96546 0.93332 0.93172 0.90775 0.90990 0.82244 0.85032 0.85629 0.85799 0.85364 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.10 -2.08 5.13 -26.73 -0.14 -2.21 16 11 C -0.08 -1.31 5.34 -27.88 -0.15 -1.46 16 12 C -0.12 -1.73 5.12 -104.82 -0.54 -2.26 16 13 C 0.14 2.08 10.82 -17.46 -0.19 1.89 16 14 N -0.48 -7.44 10.34 -10.97 -0.11 -7.55 16 15 C 0.11 1.67 6.60 -84.86 -0.56 1.11 16 16 C -0.09 -1.09 9.98 -39.47 -0.39 -1.49 16 17 C -0.11 -1.08 9.94 -39.94 -0.40 -1.48 16 18 C -0.12 -1.18 9.96 -39.92 -0.40 -1.58 16 19 C -0.10 -1.06 9.77 -39.51 -0.39 -1.45 16 20 C -0.10 -1.34 5.74 -106.80 -0.61 -1.95 16 21 C -0.07 -0.93 9.54 -39.23 -0.37 -1.30 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 28 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 29 H 0.16 2.04 8.06 -52.49 -0.42 1.61 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -31.47 295.11 -9.24 -40.71 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.61 Total: -2.86 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -4.68 Total: -25.32 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.62 Total: -33.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.47 -9.24 -40.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250062954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.966 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds