Wall clock time and date at job start Thu Apr 9 2020 12:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.39358 * 119.46748 * 90.00014 * 12 11 10 14 14 C 1.36130 * 120.87023 * 179.97438 * 13 12 11 15 15 C 1.40431 * 119.61592 * 0.02562 * 14 13 12 16 16 C 1.40766 * 121.37755 * 180.02562 * 15 14 13 17 17 C 1.36576 * 118.15464 * 179.97438 * 16 15 14 18 18 C 1.39332 * 119.93077 * 0.02562 * 17 16 15 19 19 N 1.31089 * 121.74945 * 0.02562 * 18 17 16 20 20 C 1.33681 * 121.32557 * 359.95626 * 19 18 17 21 21 C 1.36080 * 119.46729 * 269.72509 * 12 11 10 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 26 26 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 27 27 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 28 28 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 29 29 H 1.07999 * 119.56580 * 359.96099 * 13 12 11 30 30 H 1.07995 * 120.19622 * 179.97438 * 14 13 12 31 31 H 1.08003 * 120.92368 * 359.95874 * 16 15 14 32 32 H 1.07999 * 120.03520 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.12929 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.12205 * 0.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 6 2.9049 -6.6540 1.2107 14 6 3.7888 -7.6888 1.2437 15 6 4.2592 -8.2384 0.0400 16 6 5.1731 -9.3090 0.0309 17 6 5.5866 -9.7929 -1.1775 18 6 5.1041 -9.2263 -2.3554 19 7 4.2538 -8.2286 -2.3430 20 6 3.8091 -7.7086 -1.1946 21 6 2.8902 -6.6446 -1.1873 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.8725 -3.6039 -0.8910 26 1 2.8713 -3.6047 0.8890 27 1 0.8532 -5.0450 0.8876 28 1 0.8540 -5.0446 -0.8922 29 1 2.5442 -6.2316 2.1369 30 1 4.1271 -8.0842 2.1900 31 1 5.5373 -9.7357 0.9537 32 1 6.2869 -10.6140 -1.2200 33 1 5.4401 -9.6188 -3.3037 34 1 2.5319 -6.2313 -2.1186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:59 Heat of formation + Delta-G solvation = 9.228692 kcal Electronic energy + Delta-G solvation = -15653.611061 eV Core-core repulsion = 13128.380247 eV Total energy + Delta-G solvation = -2525.230814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.72536 -38.69637 -36.19442 -34.69284 -33.92126 -31.63720 -31.00882 -28.62534 -25.83867 -24.86419 -23.44076 -22.95888 -21.85362 -18.85026 -18.42895 -17.84331 -17.66696 -16.53803 -15.86506 -15.39708 -15.36527 -15.30330 -14.75194 -14.45685 -14.17393 -13.86728 -13.72978 -13.13983 -12.91174 -12.75135 -12.60656 -12.35025 -12.24943 -12.18910 -11.50138 -11.44229 -11.33908 -11.07923 -10.55921 -10.40515 -9.58676 -9.16609 -8.20625 -6.31888 -0.49434 -0.11671 1.07800 1.38992 1.40544 1.51729 2.00747 2.40588 3.12131 3.16597 3.36456 3.67330 3.81666 3.94449 4.07170 4.12377 4.24340 4.32231 4.50290 4.53389 4.63770 4.73324 4.88641 4.94654 5.08032 5.10092 5.18700 5.21997 5.23818 5.43935 5.51870 5.60477 5.66292 5.78133 5.84967 5.95703 6.25146 6.84705 7.01015 7.37226 8.91059 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.042689 B = 0.003974 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.751380 B = 7044.253908 C = 7190.044337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.088 4.088 11 C -0.078 4.078 12 C -0.053 4.053 13 C -0.123 4.123 14 C -0.087 4.087 15 C -0.129 4.129 16 C -0.055 4.055 17 C -0.177 4.177 18 C 0.122 3.878 19 N -0.519 5.519 20 C 0.105 3.895 21 C -0.123 4.123 22 H 0.264 0.736 23 H -0.002 1.002 24 H -0.009 1.009 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.144 0.856 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.286 -21.532 1.805 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.126 4.126 11 C -0.115 4.115 12 C -0.055 4.055 13 C -0.140 4.140 14 C -0.105 4.105 15 C -0.131 4.131 16 C -0.080 4.080 17 C -0.197 4.197 18 C -0.050 4.050 19 N -0.228 5.228 20 C -0.015 4.015 21 C -0.142 4.142 22 H 0.073 0.927 23 H 0.016 0.984 24 H 0.010 0.990 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.184 0.816 31 H 0.191 0.809 32 H 0.193 0.807 33 H 0.202 0.798 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.760 -20.979 1.063 23.601 hybrid contribution 0.143 0.930 0.377 1.014 sum 10.902 -20.049 1.440 22.867 Atomic orbital electron populations 1.70097 1.07737 1.27792 1.51657 1.25977 0.95804 1.03325 0.94690 0.85456 0.78700 0.78466 0.78492 1.19872 1.20438 1.18792 1.21708 0.93455 0.92591 1.50619 0.92531 1.19037 0.94406 0.92864 0.95074 1.21384 0.97883 0.92962 1.00325 1.20686 0.96207 0.91557 1.03070 1.19811 0.96797 0.95581 0.93339 1.21125 0.98135 0.97005 0.97766 1.21332 0.95921 0.95492 0.97766 1.19174 1.00496 0.99234 0.94162 1.21917 0.92802 0.92527 1.00772 1.22277 1.02324 1.02668 0.92412 1.23611 0.90641 0.90099 1.00660 1.68018 1.13094 1.12371 1.29289 1.19031 0.96952 0.96257 0.89308 1.20694 0.98457 0.96634 0.98433 0.92713 0.98373 0.99034 0.94029 0.92835 0.90171 0.91638 0.83862 0.81636 0.80894 0.80653 0.79833 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.79 5.13 30.59 0.16 -3.63 16 11 C -0.08 -2.75 5.31 29.85 0.16 -2.60 16 12 C -0.05 -1.69 5.10 -20.10 -0.10 -1.79 16 13 C -0.12 -3.18 9.59 22.05 0.21 -2.96 16 14 C -0.09 -1.87 9.78 22.31 0.22 -1.65 16 15 C -0.13 -3.11 5.74 -21.28 -0.12 -3.23 16 16 C -0.05 -0.88 9.90 22.50 0.22 -0.66 16 17 C -0.18 -2.54 10.03 22.14 0.22 -2.32 16 18 C 0.12 2.40 11.15 85.07 0.95 3.35 16 19 N -0.52 -15.13 10.34 -188.63 -1.95 -17.08 16 20 C 0.10 3.20 6.60 40.29 0.27 3.47 16 21 C -0.12 -4.09 9.58 22.34 0.21 -3.88 16 22 H 0.26 15.30 8.31 -92.71 -0.77 14.52 16 23 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.08 2.66 8.08 -2.39 -0.02 2.64 16 28 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 29 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -72.56 295.04 4.67 -67.89 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 1.07 Total: 5.34 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 3.24 Total: -45.92 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.67 Total: -74.54 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.56 4.67 -67.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.119 kcal (2) G-P(sol) polarization free energy of solvation -72.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds