Wall clock time and date at job start Thu Apr 9 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47626 * 2 1 4 4 C 1.50706 * 109.46867 * 119.99622 * 2 1 3 5 5 H 1.07994 * 120.00375 * 119.99850 * 4 2 1 6 6 C 1.37879 * 119.99572 * 299.99663 * 4 2 1 7 7 N 1.31513 * 120.00483 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47238 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47305 * 120.00223 * 8 6 4 11 11 H 1.48494 * 109.47450 * 240.00306 * 8 6 4 12 12 N 1.46898 * 109.47463 * 239.99056 * 2 1 3 13 13 C 1.46899 * 110.99876 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.47243 * 180.02562 * 13 12 2 15 15 O 1.21227 * 120.00041 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99776 * 180.02562 * 14 13 12 17 17 C 1.47057 * 125.40825 * 180.02562 * 16 14 13 18 18 C 1.54105 * 103.99235 * 179.97438 * 17 16 14 19 19 N 1.47394 * 103.70056 * 0.10684 * 18 17 16 20 20 C 1.33947 * 109.21036 * 359.88525 * 19 18 17 21 21 O 1.21542 * 123.03928 * 180.02562 * 20 19 18 22 22 H 1.08993 * 109.47661 * 300.00878 * 1 2 3 23 23 H 1.09005 * 109.46707 * 60.00510 * 1 2 3 24 24 H 1.09000 * 109.47103 * 180.02562 * 1 2 3 25 25 H 0.97000 * 120.00447 * 180.02562 * 7 6 4 26 26 H 1.00899 * 111.00305 * 321.05220 * 12 2 1 27 27 H 1.09004 * 109.47201 * 59.99705 * 13 12 2 28 28 H 1.09001 * 109.47448 * 300.00234 * 13 12 2 29 29 H 1.09002 * 110.54831 * 298.59337 * 17 16 14 30 30 H 1.08997 * 110.54826 * 61.25812 * 17 16 14 31 31 H 1.08996 * 110.55034 * 118.66113 * 18 17 16 32 32 H 1.09001 * 110.54910 * 241.47819 * 18 17 16 33 33 H 0.97000 * 125.37712 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3211 -1.1199 4.0081 9 1 3.1461 -2.2868 3.6041 10 1 3.1463 -0.1870 4.8166 11 1 1.1658 -1.5862 4.8162 12 7 2.0197 -0.6927 -1.1993 13 6 2.0826 0.2223 -2.3468 14 6 2.5875 -0.5223 -3.5559 15 8 2.8678 -1.6986 -3.4700 16 7 2.7285 0.1199 -4.7324 17 6 3.2085 -0.4877 -5.9826 18 6 3.1744 0.6716 -6.9973 19 7 2.6797 1.8131 -6.2069 20 6 2.4546 1.4132 -4.9485 21 8 2.0403 2.1568 -4.0809 22 1 -0.3634 0.5139 0.8898 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.7086 1.1617 3.4843 26 1 1.4496 -1.4981 -1.4099 27 1 2.7590 1.0459 -2.1182 28 1 1.0872 0.6160 -2.5526 29 1 4.2260 -0.8593 -5.8614 30 1 2.5434 -1.2920 -6.2970 31 1 4.1747 0.8749 -7.3797 32 1 2.4901 0.4446 -7.8148 33 1 2.5383 2.7111 -6.5451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331775414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:19 Heat of formation + Delta-G solvation = -39.323310 kcal Electronic energy + Delta-G solvation = -17413.628749 eV Core-core repulsion = 14475.443299 eV Total energy + Delta-G solvation = -2938.185450 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86114 -38.74448 -36.78129 -35.58137 -33.89282 -32.38540 -29.69267 -28.87317 -25.81753 -25.02037 -23.31916 -23.04339 -20.11248 -19.41253 -17.97948 -17.25649 -16.97298 -15.98058 -15.51665 -14.97274 -14.73178 -14.54710 -14.06168 -13.94217 -13.59054 -13.01087 -12.75371 -12.62926 -12.40655 -11.62499 -11.51995 -10.89550 -10.72811 -10.49915 -10.38455 -10.06998 -10.05023 -9.81290 -9.75042 -9.36850 -8.91931 -8.29191 -7.20258 -5.91000 -3.93804 2.07733 2.18779 3.17563 3.38089 3.42676 3.45334 3.52166 3.96592 4.49840 4.53055 4.56893 4.90161 5.16834 5.24502 5.30911 5.40511 5.46066 6.00545 6.17570 6.52144 6.65201 6.75745 6.88081 6.91759 7.15198 7.38899 7.80823 7.94570 7.97869 8.17902 8.32761 8.58323 8.66030 9.14003 9.71007 11.16310 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.048319 B = 0.005072 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.342754 B = 5519.558521 C = 5831.634264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.492 4.492 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.673 5.673 13 C 0.058 3.942 14 C 0.545 3.455 15 O -0.486 6.486 16 N -0.586 5.586 17 C 0.079 3.921 18 C 0.093 3.907 19 N -0.734 5.734 20 C 0.697 3.303 21 O -0.544 6.544 22 H 0.091 0.909 23 H 0.006 0.994 24 H 0.029 0.971 25 H 0.259 0.741 26 H 0.332 0.668 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 0.951 -21.071 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.531 4.531 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.305 5.305 13 C -0.075 4.075 14 C 0.336 3.664 15 O -0.355 6.355 16 N -0.335 5.335 17 C -0.043 4.043 18 C -0.032 4.032 19 N -0.398 5.398 20 C 0.398 3.602 21 O -0.417 6.417 22 H 0.109 0.891 23 H 0.025 0.975 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.150 0.850 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.628 0.754 -20.053 20.393 hybrid contribution -0.683 0.103 0.187 0.715 sum 2.945 0.857 -19.866 20.101 Atomic orbital electron populations 1.22442 1.00535 0.99289 1.00667 1.19226 0.89745 0.94592 0.85947 0.94499 1.21194 1.30079 1.12429 0.89405 0.91709 1.24952 0.95390 0.95241 0.99030 1.69901 1.37430 1.23262 1.23196 0.86427 0.78463 0.79661 0.82766 1.19697 1.21184 1.21246 1.60678 1.58993 1.08531 1.02287 1.21896 1.01299 0.96048 0.88208 1.21468 0.75485 0.87263 0.82211 1.90695 1.45986 1.15639 1.83144 1.46480 1.63590 1.11458 1.12012 1.22581 1.02675 0.96742 0.82310 1.22509 1.01305 0.84780 0.94640 1.45282 1.71120 1.13619 1.09737 1.15973 0.78483 0.82119 0.83675 1.91082 1.49440 1.55783 1.45439 0.89066 0.97521 0.95232 0.93156 0.85034 0.87497 0.91962 0.88587 0.88665 0.89267 0.89318 0.72428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 8.94 37.16 0.33 -3.96 16 2 C 0.21 5.65 2.57 -68.87 -0.18 5.47 16 3 H 0.04 1.07 7.80 -51.93 -0.40 0.66 16 4 C -0.49 -14.25 8.84 -34.44 -0.30 -14.56 16 5 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.05 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -26.46 11.32 55.43 0.63 -25.83 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 N -0.67 -15.82 5.86 -109.22 -0.64 -16.46 16 13 C 0.06 1.17 4.24 -4.98 -0.02 1.15 16 14 C 0.54 9.71 7.83 -10.99 -0.09 9.63 16 15 O -0.49 -9.64 16.51 5.60 0.09 -9.55 16 16 N -0.59 -8.03 3.00 -120.14 -0.36 -8.39 16 17 C 0.08 0.67 7.20 -3.16 -0.02 0.64 16 18 C 0.09 0.46 8.08 -2.98 -0.02 0.44 16 19 N -0.73 -6.07 6.39 -64.47 -0.41 -6.49 16 20 C 0.70 9.50 8.51 -88.40 -0.75 8.74 16 21 O -0.54 -9.66 15.01 5.33 0.08 -9.58 16 22 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 23 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 24 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.33 7.61 8.17 -39.29 -0.32 7.29 16 27 H 0.11 2.27 7.48 -51.93 -0.39 1.88 16 28 H 0.06 1.28 6.87 -51.93 -0.36 0.92 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.43 2.63 8.96 -40.82 -0.37 2.27 16 LS Contribution 280.09 15.07 4.22 4.22 Total: -1.00 -34.66 280.09 -6.76 -41.42 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.20 Total: 4.47 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -1.15 Total: 9.02 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.78 Total: -57.17 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.17 Total: -19.13 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.66 -6.76 -41.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331775414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.097 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds