Wall clock time and date at job start Thu Apr 9 2020 12:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47626 * 2 1 4 4 C 1.50706 * 109.46867 * 119.99622 * 2 1 3 5 5 H 1.07994 * 120.00375 * 119.99850 * 4 2 1 6 6 C 1.37879 * 119.99572 * 299.99663 * 4 2 1 7 7 N 1.31513 * 120.00483 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47238 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47305 * 120.00223 * 8 6 4 11 11 H 1.48494 * 109.47450 * 240.00306 * 8 6 4 12 12 N 1.46898 * 109.47463 * 239.99056 * 2 1 3 13 13 C 1.46899 * 110.99876 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.47243 * 180.02562 * 13 12 2 15 15 O 1.21227 * 120.00041 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99776 * 180.02562 * 14 13 12 17 17 C 1.47057 * 125.40825 * 180.02562 * 16 14 13 18 18 C 1.54105 * 103.99235 * 179.97438 * 17 16 14 19 19 N 1.47394 * 103.70056 * 0.10684 * 18 17 16 20 20 C 1.33947 * 109.21036 * 359.88525 * 19 18 17 21 21 O 1.21542 * 123.03928 * 180.02562 * 20 19 18 22 22 H 1.08993 * 109.47661 * 300.00878 * 1 2 3 23 23 H 1.09005 * 109.46707 * 60.00510 * 1 2 3 24 24 H 1.09000 * 109.47103 * 180.02562 * 1 2 3 25 25 H 0.97000 * 120.00447 * 180.02562 * 7 6 4 26 26 H 1.00899 * 111.00305 * 321.05220 * 12 2 1 27 27 H 1.09004 * 109.47201 * 59.99705 * 13 12 2 28 28 H 1.09001 * 109.47448 * 300.00234 * 13 12 2 29 29 H 1.09002 * 110.54831 * 298.59337 * 17 16 14 30 30 H 1.08997 * 110.54826 * 61.25812 * 17 16 14 31 31 H 1.08996 * 110.55034 * 118.66113 * 18 17 16 32 32 H 1.09001 * 110.54910 * 241.47819 * 18 17 16 33 33 H 0.97000 * 125.37712 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3211 -1.1199 4.0081 9 1 3.1461 -2.2868 3.6041 10 1 3.1463 -0.1870 4.8166 11 1 1.1658 -1.5862 4.8162 12 7 2.0197 -0.6927 -1.1993 13 6 2.0826 0.2223 -2.3468 14 6 2.5875 -0.5223 -3.5559 15 8 2.8678 -1.6986 -3.4700 16 7 2.7285 0.1199 -4.7324 17 6 3.2085 -0.4877 -5.9826 18 6 3.1744 0.6716 -6.9973 19 7 2.6797 1.8131 -6.2069 20 6 2.4546 1.4132 -4.9485 21 8 2.0403 2.1568 -4.0809 22 1 -0.3634 0.5139 0.8898 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.7086 1.1617 3.4843 26 1 1.4496 -1.4981 -1.4099 27 1 2.7590 1.0459 -2.1182 28 1 1.0872 0.6160 -2.5526 29 1 4.2260 -0.8593 -5.8614 30 1 2.5434 -1.2920 -6.2970 31 1 4.1747 0.8749 -7.3797 32 1 2.4901 0.4446 -7.8148 33 1 2.5383 2.7111 -6.5451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331775414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:18 Heat of formation + Delta-G solvation = -67.925513 kcal Electronic energy + Delta-G solvation = -17414.869034 eV Core-core repulsion = 14475.443299 eV Total energy + Delta-G solvation = -2939.425735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.90130 -40.10558 -37.96511 -37.39492 -34.94260 -34.46009 -31.20205 -30.06593 -27.44827 -27.11042 -24.56294 -23.87555 -22.17855 -20.62681 -19.01780 -18.61361 -18.20671 -17.67581 -16.83408 -16.68799 -16.13824 -15.74904 -15.33276 -15.22216 -14.94326 -14.62566 -14.56402 -13.62899 -13.49891 -13.27668 -13.20561 -12.88199 -12.73841 -12.45592 -12.19932 -11.98643 -11.63958 -11.42037 -11.01644 -10.93193 -10.50033 -10.07768 -9.11781 -8.10520 -6.22253 0.75497 1.16027 1.43398 1.44206 1.58154 2.03558 2.44274 2.64102 3.17630 3.28099 3.51666 3.65759 4.01537 4.06540 4.31537 4.47520 4.57132 4.70109 4.72339 4.83660 4.87222 5.03170 5.29389 5.43445 5.66507 5.74038 5.82309 5.98385 6.20831 6.52624 6.61015 6.72128 6.90125 7.21355 7.47183 8.95938 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.048319 B = 0.005072 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.342754 B = 5519.558521 C = 5831.634264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.005 0.995 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.678 5.678 13 C 0.063 3.937 14 C 0.554 3.446 15 O -0.510 6.510 16 N -0.586 5.586 17 C 0.068 3.932 18 C 0.100 3.900 19 N -0.712 5.712 20 C 0.687 3.313 21 O -0.595 6.595 22 H 0.067 0.933 23 H 0.023 0.977 24 H 0.035 0.965 25 H 0.262 0.738 26 H 0.336 0.664 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 0.401 -23.019 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.309 5.309 13 C -0.070 4.070 14 C 0.344 3.656 15 O -0.382 6.382 16 N -0.333 5.333 17 C -0.053 4.053 18 C -0.023 4.023 19 N -0.375 5.375 20 C 0.387 3.613 21 O -0.473 6.473 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 4.253 0.223 -22.110 22.516 hybrid contribution -0.849 0.326 0.654 1.121 sum 3.404 0.549 -21.456 21.731 Atomic orbital electron populations 1.22239 0.99565 0.99483 1.00266 1.19004 0.90425 0.92826 0.86911 0.97728 1.21422 1.30718 1.12572 0.90852 0.92733 1.25754 0.95348 0.95878 1.01955 1.70021 1.37891 1.24217 1.24109 0.85375 0.78107 0.78497 0.78817 1.19434 1.20549 1.20266 1.60521 1.58780 1.08978 1.02665 1.21732 1.01059 0.95407 0.88754 1.20670 0.75402 0.86602 0.82932 1.90680 1.47275 1.16280 1.83917 1.46218 1.62859 1.11863 1.12407 1.23071 1.03332 0.98476 0.80395 1.22869 1.04091 0.81659 0.93671 1.45251 1.69156 1.15125 1.07976 1.16271 0.78449 0.81681 0.84860 1.91049 1.51811 1.56931 1.47498 0.91427 0.95814 0.94594 0.92837 0.84653 0.89043 0.92306 0.87682 0.87397 0.85937 0.85790 0.70935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.05 8.94 71.98 0.64 -7.40 16 2 C 0.22 11.91 2.57 44.17 0.11 12.03 16 3 H 0.00 0.29 7.80 -2.39 -0.02 0.27 16 4 C -0.52 -30.57 8.84 25.60 0.23 -30.34 16 5 H 0.05 3.27 7.81 -2.91 -0.02 3.24 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -55.11 11.32 21.45 0.24 -54.87 16 8 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 N -0.68 -32.77 5.86 -499.46 -2.92 -35.70 16 13 C 0.06 2.64 4.24 85.56 0.36 3.00 16 14 C 0.55 19.83 7.83 87.66 0.69 20.52 16 15 O -0.51 -20.19 16.51 -2.87 -0.05 -20.24 16 16 N -0.59 -15.40 3.00 -771.17 -2.32 -17.72 16 17 C 0.07 0.94 7.20 86.65 0.62 1.56 16 18 C 0.10 0.55 8.08 86.58 0.70 1.25 16 19 N -0.71 -9.72 6.39 -476.64 -3.04 -12.76 16 20 C 0.69 18.05 8.51 179.57 1.53 19.58 16 21 O -0.60 -21.55 15.01 -3.85 -0.06 -21.60 16 22 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 23 H 0.02 1.09 7.45 -2.38 -0.02 1.07 16 24 H 0.03 1.75 8.13 -2.39 -0.02 1.73 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.34 15.69 8.17 -89.69 -0.73 14.95 16 27 H 0.09 4.11 7.48 -2.38 -0.02 4.09 16 28 H 0.06 2.51 6.87 -2.39 -0.02 2.49 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.45 4.12 8.96 -92.71 -0.83 3.28 16 Total: -1.00 -77.38 280.09 -1.21 -78.58 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -0.42 Total: 15.40 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 5.33 Total: 21.14 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -8.04 Total: -121.05 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.11 Total: -41.84 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -77.38 -1.21 -78.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331775414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.658 kcal (2) G-P(sol) polarization free energy of solvation -77.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds