Wall clock time and date at job start Thu Apr 9 2020 12:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99915 * 2 1 4 4 C 1.53003 * 109.46778 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46873 * 304.99738 * 4 3 2 6 6 C 1.52997 * 109.47486 * 65.00277 * 4 3 2 7 7 N 1.46502 * 109.47104 * 185.00197 * 4 3 2 8 8 N 1.40583 * 127.38570 * 321.06145 * 7 4 3 9 9 N 1.28903 * 106.84107 * 180.02562 * 8 7 4 10 10 N 1.28423 * 110.35092 * 359.97438 * 9 8 7 11 11 C 1.31566 * 110.49632 * 0.02562 * 10 9 8 12 12 N 1.38231 * 126.45480 * 179.97438 * 11 10 9 13 13 C 1.46498 * 119.99991 * 5.26297 * 12 11 10 14 14 C 1.36927 * 119.99762 * 185.26892 * 12 11 10 15 15 H 1.07997 * 119.99866 * 38.73825 * 14 12 11 16 16 C 1.38798 * 119.99563 * 218.74074 * 14 12 11 17 17 N 1.31567 * 120.00292 * 11.71890 * 16 14 12 18 18 Si 1.86807 * 119.99782 * 191.71591 * 16 14 12 19 19 H 1.48495 * 109.46800 * 90.00111 * 18 16 14 20 20 H 1.48494 * 109.46972 * 209.99940 * 18 16 14 21 21 H 1.48503 * 109.47047 * 330.00106 * 18 16 14 22 22 H 1.09004 * 109.47383 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46806 * 299.99779 * 1 2 3 24 24 H 1.08994 * 109.47080 * 59.99447 * 1 2 3 25 25 H 1.08996 * 109.47458 * 60.00706 * 3 2 1 26 26 H 1.08997 * 109.47324 * 300.00216 * 3 2 1 27 27 H 1.09009 * 109.46592 * 299.99993 * 6 4 3 28 28 H 1.08997 * 109.47111 * 59.99594 * 6 4 3 29 29 H 1.09002 * 109.47296 * 180.02562 * 6 4 3 30 30 H 1.09008 * 109.46839 * 86.24624 * 13 12 11 31 31 H 1.09000 * 109.47232 * 206.24075 * 13 12 11 32 32 H 1.09001 * 109.47558 * 326.24866 * 13 12 11 33 33 H 0.96999 * 119.99689 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5681 0.8410 6 6 3.9953 0.5369 -1.3083 7 7 4.1311 2.5176 0.1198 8 7 3.6888 3.7078 -0.4838 9 7 4.4995 4.6386 -0.1121 10 7 5.4050 4.1593 0.6622 11 6 5.2258 2.8676 0.8362 12 7 6.0078 2.0261 1.6052 13 6 7.0966 2.5761 2.4165 14 6 5.7647 0.6786 1.6085 15 1 5.4865 0.1779 0.6930 16 6 5.8758 -0.0436 2.7886 17 7 5.9854 0.5870 3.9380 18 14 5.8695 -1.9112 2.7447 19 1 7.2616 -2.4075 2.6010 20 1 5.2854 -2.4339 4.0059 21 1 5.0565 -2.3765 1.5924 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.5521 -0.4550 -1.3978 28 1 3.6793 1.1533 -2.1498 29 1 5.0819 0.4503 -1.3085 30 1 6.7051 2.8930 3.3832 31 1 7.8596 1.8123 2.5663 32 1 7.5351 3.4322 1.9038 33 1 6.0627 0.0822 4.7627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332499933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:20 Heat of formation + Delta-G solvation = 85.186043 kcal Electronic energy + Delta-G solvation = -18212.374217 eV Core-core repulsion = 15311.880649 eV Total energy + Delta-G solvation = -2900.493569 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50309 -37.99027 -36.62354 -34.76061 -32.32825 -30.40961 -29.74233 -27.31357 -26.67694 -25.49654 -24.40412 -22.98542 -20.45338 -20.26996 -17.95214 -16.50029 -16.07824 -15.82673 -15.48339 -15.07262 -14.62854 -14.48531 -13.77875 -13.43746 -12.96141 -12.60123 -12.27758 -11.95841 -11.65264 -11.55255 -11.47691 -11.25115 -11.08979 -11.06306 -10.84309 -10.54865 -10.29740 -9.76557 -9.57602 -9.48955 -9.29732 -9.07425 -7.29535 -6.61727 -4.34560 2.40784 2.81903 3.00763 3.07463 3.09893 3.72529 3.79724 4.03554 4.62879 4.70031 5.05154 5.24824 5.38739 5.44649 5.63962 5.67551 5.82485 5.84905 5.92376 6.09429 6.22407 6.38776 6.49575 6.65816 6.79383 6.88402 7.02243 7.09117 7.19814 7.37413 7.80703 8.27703 8.88342 9.18844 9.92914 10.37487 Molecular weight = 241.13amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.012505 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.194413 B = 2238.484892 C = 3551.783491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.386 6.386 3 C 0.065 3.935 4 C 0.153 3.847 5 H 0.147 0.853 6 C -0.156 4.156 7 N -0.424 5.424 8 N -0.155 5.155 9 N -0.037 5.037 10 N -0.418 5.418 11 C 0.481 3.519 12 N -0.405 5.405 13 C 0.134 3.866 14 C -0.350 4.350 15 H 0.100 0.900 16 C 0.050 3.950 17 N -0.853 5.853 18 Si 0.922 3.078 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.262 1.262 22 H 0.085 0.915 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -4.578 -3.802 7.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C -0.012 4.012 4 C 0.049 3.951 5 H 0.165 0.835 6 C -0.215 4.215 7 N -0.231 5.231 8 N -0.145 5.145 9 N -0.033 5.033 10 N -0.290 5.290 11 C 0.121 3.879 12 N -0.112 5.112 13 C -0.009 4.009 14 C -0.479 4.479 15 H 0.117 0.883 16 C -0.160 4.160 17 N -0.487 5.487 18 Si 0.747 3.253 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.186 1.186 22 H 0.103 0.897 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.996 -3.700 -3.963 7.372 hybrid contribution -0.219 -1.693 0.441 1.763 sum -5.215 -5.392 -3.522 8.287 Atomic orbital electron populations 1.22713 0.81061 1.02470 0.99978 1.87812 1.19582 1.27566 1.95488 1.22584 0.93064 0.84377 1.01210 1.21582 0.91154 0.79801 1.02560 0.83550 1.22171 1.01961 1.01060 0.96266 1.50505 1.22815 1.08805 1.40936 1.82064 1.21710 0.86839 1.23918 1.77472 0.98496 1.22336 1.05007 1.74642 1.24950 1.04452 1.24951 1.22097 0.84776 0.88734 0.92260 1.41492 1.25423 1.03564 1.40672 1.21410 0.88088 0.97139 0.94300 1.19592 1.52009 0.80565 0.95686 0.88318 1.25564 0.95120 1.00869 0.94423 1.70002 1.43858 1.36832 0.97970 0.85982 0.79100 0.81573 0.78672 1.19773 1.20424 1.18583 0.89671 0.94140 0.94151 0.92941 0.92294 0.90414 0.92510 0.91942 0.92512 0.91631 0.93549 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -6.20 10.24 -35.23 -0.36 -6.56 16 3 C 0.07 1.13 5.29 37.16 0.20 1.33 16 4 C 0.15 2.99 2.61 -67.93 -0.18 2.81 16 5 H 0.15 3.15 4.88 -51.93 -0.25 2.89 16 6 C -0.16 -2.68 8.95 37.16 0.33 -2.35 16 7 N -0.42 -9.53 3.46 -55.34 -0.19 -9.73 16 8 N -0.16 -3.57 13.52 60.35 0.82 -2.75 16 9 N -0.04 -0.89 13.38 60.35 0.81 -0.09 16 10 N -0.42 -10.40 11.58 30.11 0.35 -10.05 16 11 C 0.48 11.73 8.38 -320.35 -2.69 9.04 16 12 N -0.41 -9.78 3.01 -123.99 -0.37 -10.15 16 13 C 0.13 2.98 8.98 59.85 0.54 3.52 16 14 C -0.35 -8.27 7.01 -15.07 -0.11 -8.37 16 15 H 0.10 2.24 4.73 -52.49 -0.25 1.99 16 16 C 0.05 1.17 5.10 -17.46 -0.09 1.08 16 17 N -0.85 -21.00 11.77 55.49 0.65 -20.34 16 18 Si 0.92 18.15 29.57 -169.99 -5.03 13.12 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.20 7.82 -51.92 -0.41 0.79 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.11 7.35 -51.93 -0.38 0.73 16 30 H 0.06 1.32 7.66 -51.92 -0.40 0.93 16 31 H 0.06 1.42 7.75 -51.93 -0.40 1.02 16 32 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16 33 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 LS Contribution 280.27 15.07 4.22 4.22 Total: -1.00 -27.26 280.27 -4.14 -31.41 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.16 Total: 2.33 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -0.88 Total: 8.58 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 2.06 Total: -53.10 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.36 Total: -6.56 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.26 -4.14 -31.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332499933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.593 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds