Wall clock time and date at job start Thu Apr 9 2020 12:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00121 * 2 1 4 4 C 1.53000 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47177 * 54.99880 * 4 3 2 6 6 C 1.53003 * 109.47137 * 295.00416 * 4 3 2 7 7 N 1.46500 * 109.47358 * 175.00507 * 4 3 2 8 8 N 1.40581 * 127.38872 * 65.03772 * 7 4 3 9 9 N 1.28906 * 106.83831 * 180.29692 * 8 7 4 10 10 N 1.28416 * 110.35184 * 359.75074 * 9 8 7 11 11 C 1.31562 * 110.50152 * 359.97438 * 10 9 8 12 12 N 1.38226 * 126.46496 * 180.02562 * 11 10 9 13 13 C 1.46507 * 119.99574 * 265.14102 * 12 11 10 14 14 C 1.36924 * 120.00431 * 85.13249 * 12 11 10 15 15 H 1.08002 * 119.99431 * 352.14720 * 14 12 11 16 16 C 1.38799 * 120.00413 * 171.86992 * 14 12 11 17 17 N 1.31571 * 119.99674 * 5.41822 * 16 14 12 18 18 Si 1.86795 * 120.00368 * 185.42412 * 16 14 12 19 19 H 1.48500 * 109.47160 * 59.99806 * 18 16 14 20 20 H 1.48497 * 109.47251 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46961 * 300.00053 * 18 16 14 22 22 H 1.08996 * 109.47430 * 59.99522 * 1 2 3 23 23 H 1.09000 * 109.46669 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46886 * 299.98940 * 1 2 3 25 25 H 1.08998 * 109.46989 * 60.00669 * 3 2 1 26 26 H 1.08997 * 109.47521 * 300.00653 * 3 2 1 27 27 H 1.09003 * 109.47214 * 60.00020 * 6 4 3 28 28 H 1.09002 * 109.47265 * 180.02562 * 6 4 3 29 29 H 1.08995 * 109.47194 * 299.99654 * 6 4 3 30 30 H 1.09000 * 109.46592 * 243.71253 * 13 12 11 31 31 H 1.08994 * 109.47265 * 3.71715 * 13 12 11 32 32 H 1.09003 * 109.46648 * 123.71676 * 13 12 11 33 33 H 0.96990 * 120.00038 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8427 6 6 3.9963 0.5363 1.3064 7 7 4.1309 2.5178 -0.1209 8 7 4.0545 3.5734 0.8043 9 7 4.7112 4.5610 0.2992 10 7 5.1971 4.2359 -0.8442 11 6 4.8752 2.9966 -1.1462 12 7 5.2254 2.3137 -2.2958 13 6 4.3047 2.2764 -3.4348 14 6 6.4328 1.6722 -2.3703 15 1 7.1632 1.8033 -1.5855 16 6 6.7158 0.8488 -3.4512 17 7 5.8698 0.7677 -4.4556 18 14 8.2977 -0.1442 -3.4801 19 1 8.3276 -1.0617 -2.3128 20 1 8.3616 -0.9371 -4.7341 21 1 9.4612 0.7763 -3.4160 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.5533 -0.4556 1.3959 28 1 5.0829 0.4507 1.3061 29 1 3.6810 1.1524 2.1484 30 1 3.9885 1.2486 -3.6128 31 1 3.4323 2.8925 -3.2170 32 1 4.8084 2.6605 -4.3218 33 1 6.0673 0.1921 -5.2108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332499934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:22 Heat of formation + Delta-G solvation = 103.884203 kcal Electronic energy + Delta-G solvation = -17999.404760 eV Core-core repulsion = 15099.722005 eV Total energy + Delta-G solvation = -2899.682755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.01065 -38.22600 -36.33430 -35.14652 -32.03484 -30.83963 -29.84524 -27.44820 -26.47651 -25.72832 -24.25801 -23.35292 -20.92929 -20.35624 -17.75639 -16.95851 -16.18320 -16.00803 -15.75432 -15.25503 -14.80681 -14.19559 -13.79961 -13.31039 -13.06995 -12.82670 -12.48509 -12.05807 -11.84169 -11.68160 -11.46582 -11.33457 -10.95114 -10.90240 -10.84147 -10.45367 -10.27596 -10.09978 -9.80197 -9.71213 -9.19968 -9.00074 -7.77587 -6.11639 -3.67765 1.80865 2.36725 3.15371 3.22609 3.26738 3.28948 3.75326 4.11675 4.67187 4.73498 4.91224 5.05894 5.21434 5.25321 5.26357 5.44650 5.53540 5.54424 5.80797 5.83363 5.99199 6.18907 6.21619 6.34076 6.42042 6.80830 7.02851 7.18290 7.40841 7.49747 7.92373 8.72345 9.29553 9.41207 9.63744 10.86741 Molecular weight = 241.13amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.008782 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.420742 B = 3187.731361 C = 3805.598928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.059 3.941 4 C 0.157 3.843 5 H 0.125 0.875 6 C -0.150 4.150 7 N -0.391 5.391 8 N -0.119 5.119 9 N -0.057 5.057 10 N -0.349 5.349 11 C 0.513 3.487 12 N -0.509 5.509 13 C 0.167 3.833 14 C -0.278 4.278 15 H 0.083 0.917 16 C 0.022 3.978 17 N -0.901 5.901 18 Si 0.927 3.073 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.277 1.277 22 H 0.042 0.958 23 H 0.088 0.912 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.063 0.937 31 H -0.001 1.001 32 H 0.068 0.932 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 -3.700 5.852 10.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.019 4.019 4 C 0.053 3.947 5 H 0.143 0.857 6 C -0.208 4.208 7 N -0.197 5.197 8 N -0.107 5.107 9 N -0.053 5.053 10 N -0.206 5.206 11 C 0.150 3.850 12 N -0.232 5.232 13 C 0.025 3.975 14 C -0.406 4.406 15 H 0.101 0.899 16 C -0.178 4.178 17 N -0.544 5.544 18 Si 0.754 3.246 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.202 1.202 22 H 0.061 0.939 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.086 0.914 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.378 -2.875 6.404 10.930 hybrid contribution 0.401 -1.180 -0.548 1.361 sum -7.977 -4.055 5.856 10.695 Atomic orbital electron populations 1.22751 0.80630 1.02816 1.00096 1.87825 1.19935 1.26889 1.95485 1.22717 0.92685 0.85183 1.01272 1.21154 0.91284 0.79646 1.02616 0.85691 1.22008 1.02252 1.01285 0.95258 1.53229 1.39010 1.12464 1.15029 1.82210 1.22482 0.92743 1.13220 1.77879 1.05400 1.18950 1.03089 1.75054 1.24746 1.11249 1.09537 1.22014 0.87501 0.88771 0.86699 1.41045 1.18786 1.57384 1.06008 1.21440 0.88460 1.00175 0.87474 1.19219 0.90795 1.22484 1.08101 0.89873 1.24995 0.99158 0.97981 0.95630 1.70179 1.35958 1.40027 1.08222 0.85984 0.81512 0.79639 0.77422 1.20377 1.20944 1.20250 0.93942 0.89373 0.94043 0.92116 0.92865 0.89949 0.91690 0.91631 0.91827 0.98228 0.91361 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.32 10.24 -35.23 -0.36 -5.68 16 3 C 0.06 0.88 5.64 37.16 0.21 1.09 16 4 C 0.16 2.69 3.48 -67.93 -0.24 2.46 16 5 H 0.13 2.37 7.85 -51.93 -0.41 1.96 16 6 C -0.15 -2.22 9.32 37.16 0.35 -1.87 16 7 N -0.39 -7.94 3.34 -55.34 -0.18 -8.13 16 8 N -0.12 -2.47 13.81 60.35 0.83 -1.63 16 9 N -0.06 -1.28 13.38 60.35 0.81 -0.48 16 10 N -0.35 -8.43 12.20 30.11 0.37 -8.06 16 11 C 0.51 11.98 7.44 -320.35 -2.38 9.59 16 12 N -0.51 -12.51 2.82 -123.98 -0.35 -12.86 16 13 C 0.17 3.88 8.95 59.85 0.54 4.42 16 14 C -0.28 -7.24 9.78 -15.07 -0.15 -7.39 16 15 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 16 C 0.02 0.57 5.46 -17.46 -0.10 0.48 16 17 N -0.90 -23.27 9.46 55.49 0.53 -22.74 16 18 Si 0.93 20.25 29.56 -169.99 -5.02 15.23 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.07 7.82 -51.93 -0.41 0.67 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.51 6.94 -51.93 -0.36 1.15 16 31 H 0.00 -0.02 7.90 -51.93 -0.41 -0.43 16 32 H 0.07 1.70 7.16 -51.93 -0.37 1.32 16 33 H 0.26 6.54 8.31 -40.82 -0.34 6.21 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -27.87 288.03 -4.17 -32.04 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.46 Total: -2.25 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -0.66 Total: 10.22 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 2.00 Total: -53.90 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.36 Total: -5.68 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.87 -4.17 -32.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332499934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.923 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds