Wall clock time and date at job start Thu Apr 9 2020 12:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47419 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46847 * 299.99882 * 3 2 1 6 6 H 1.48501 * 109.47330 * 59.99774 * 3 2 1 7 7 C 1.37875 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00360 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47214 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99913 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99889 * 179.97438 * 11 10 9 14 14 C 1.46509 * 119.99981 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47111 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.46667 * 60.00395 * 15 14 13 17 17 O 1.42895 * 109.47467 * 300.00507 * 15 14 13 18 18 C 1.52994 * 109.47225 * 179.97438 * 15 14 13 19 19 C 1.53782 * 113.61734 * 185.00086 * 18 15 14 20 20 C 1.53781 * 87.08260 * 220.02231 * 19 18 15 21 21 C 1.53786 * 87.17350 * 25.39213 * 20 19 18 22 22 H 0.97001 * 120.00445 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47202 * 59.99910 * 9 7 2 24 24 H 1.09009 * 109.46794 * 299.99664 * 9 7 2 25 25 H 1.08993 * 109.47424 * 59.99660 * 10 9 7 26 26 H 1.08998 * 109.46809 * 299.99849 * 10 9 7 27 27 H 0.97001 * 120.00748 * 0.02562 * 13 11 10 28 28 H 1.08993 * 109.47141 * 60.00236 * 14 13 11 29 29 H 1.08993 * 109.46899 * 300.00231 * 14 13 11 30 30 H 0.96709 * 113.99599 * 299.99661 * 17 15 14 31 31 H 1.09002 * 112.84929 * 316.20161 * 18 15 14 32 32 H 1.09001 * 113.61250 * 105.47049 * 19 18 15 33 33 H 1.08997 * 113.61225 * 334.56890 * 19 18 15 34 34 H 1.09002 * 113.61445 * 139.98212 * 20 19 18 35 35 H 1.09002 * 113.61408 * 270.79943 * 20 19 18 36 36 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 37 37 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0025 12 8 0.2789 -4.9671 0.0015 13 7 2.1656 -6.1343 0.0031 14 6 1.4331 -7.4031 0.0031 15 6 2.4274 -8.5661 0.0046 16 1 3.0532 -8.5078 0.8951 17 8 3.2500 -8.4910 -1.1615 18 6 1.6624 -9.8910 0.0053 19 6 2.5700 -11.1263 0.1295 20 6 1.6535 -11.8059 -0.9016 21 6 1.2997 -10.3959 -1.4033 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5572 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8712 -3.6040 0.8922 26 1 2.8725 -3.6047 -0.8877 27 1 3.1356 -6.1344 0.0035 28 1 0.8069 -7.4612 -0.8871 29 1 0.8061 -7.4606 0.8928 30 1 2.7585 -8.5368 -1.9931 31 1 0.8226 -9.8946 0.7001 32 1 2.5404 -11.5925 1.1143 33 1 3.5851 -10.9603 -0.2310 34 1 2.1914 -12.4077 -1.6341 35 1 0.8113 -12.3348 -0.4556 36 1 1.9669 -10.0298 -2.1836 37 1 0.2460 -10.2734 -1.6541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469027059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:01 Heat of formation + Delta-G solvation = -115.301702 kcal Electronic energy + Delta-G solvation = -16972.481883 eV Core-core repulsion = 14134.542105 eV Total energy + Delta-G solvation = -2837.939777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00471 -40.18213 -37.12721 -35.59969 -35.20538 -33.04601 -30.80765 -27.92324 -26.62104 -25.90860 -23.55694 -22.72859 -21.19544 -20.11078 -18.83986 -18.13450 -17.52642 -17.05120 -16.79811 -16.42501 -16.26155 -15.82622 -15.18779 -14.68633 -14.43834 -14.16911 -13.97721 -13.42731 -13.27747 -13.22486 -12.84712 -12.78053 -12.44704 -12.14646 -11.92860 -11.83791 -11.64040 -11.39465 -11.28690 -11.08245 -11.00052 -10.58163 -10.52512 -10.07886 -8.18235 -6.32301 1.42337 1.43840 1.57302 1.71298 2.24055 2.44912 3.14721 3.44014 3.49477 3.71913 3.81455 3.95687 4.03812 4.14668 4.21890 4.38556 4.51610 4.55970 4.71470 4.82290 4.89359 4.90849 4.98027 5.08944 5.09768 5.13903 5.36825 5.45206 5.52229 5.61606 5.63107 5.85438 6.17817 6.60399 6.71520 6.86366 7.34844 7.38261 8.94729 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.073156 B = 0.003500 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.650076 B = 7998.398187 C = 8193.101643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.120 4.120 11 C 0.509 3.491 12 O -0.592 6.592 13 N -0.714 5.714 14 C 0.087 3.913 15 C 0.120 3.880 16 H 0.113 0.887 17 O -0.563 6.563 18 C -0.143 4.143 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.146 4.146 22 H 0.263 0.737 23 H -0.018 1.018 24 H -0.018 1.018 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.416 0.584 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.383 0.617 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.410 -23.258 -1.113 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.160 4.160 11 C 0.298 3.702 12 O -0.472 6.472 13 N -0.367 5.367 14 C -0.037 4.037 15 C 0.060 3.940 16 H 0.131 0.869 17 O -0.371 6.371 18 C -0.162 4.162 19 C -0.165 4.165 20 C -0.176 4.176 21 C -0.183 4.183 22 H 0.072 0.928 23 H 0.000 1.000 24 H 0.000 1.000 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.254 0.746 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.234 0.766 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.885 -23.139 -0.680 24.455 hybrid contribution -0.447 0.966 -0.330 1.115 sum 7.438 -22.173 -1.009 23.409 Atomic orbital electron populations 1.70183 1.08316 1.27760 1.51553 1.26154 0.95753 1.04001 0.94641 0.85252 0.79282 0.78002 0.77573 1.17623 1.20593 1.20581 1.21752 0.94003 0.91629 1.50663 0.90633 1.18694 0.93714 0.92501 0.94681 1.21634 0.99321 0.90239 1.04784 1.21337 0.87780 0.86876 0.74241 1.90649 1.16690 1.88468 1.51401 1.45830 1.11052 1.04550 1.75294 1.22129 0.95761 0.83691 1.02163 1.21928 0.91276 0.91086 0.89676 0.86882 1.86572 1.37820 1.96193 1.16526 1.23263 0.99694 0.93841 0.99430 1.22871 0.98464 0.95233 0.99938 1.22760 0.99835 0.96036 0.98935 1.23043 1.01770 0.97129 0.96328 0.92841 0.99951 0.99950 0.87839 0.87876 0.74646 0.92323 0.91760 0.76573 0.88139 0.91010 0.89770 0.90969 0.89887 0.89007 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.12 13.29 21.45 0.28 -59.83 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 4 H -0.25 -10.69 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.37 4.26 29.85 0.13 2.50 16 10 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 11 C 0.51 20.12 7.83 87.66 0.69 20.80 16 12 O -0.59 -29.57 15.98 -3.04 -0.05 -29.62 16 13 N -0.71 -19.58 5.45 -463.06 -2.52 -22.10 16 14 C 0.09 2.01 5.33 86.38 0.46 2.47 16 15 C 0.12 1.91 3.10 30.59 0.09 2.00 16 16 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 17 O -0.56 -9.19 12.45 -148.98 -1.86 -11.05 16 18 C -0.14 -1.92 3.59 -10.21 -0.04 -1.95 16 19 C -0.13 -1.53 7.57 31.12 0.24 -1.29 16 20 C -0.14 -1.55 8.08 31.12 0.25 -1.30 16 21 C -0.15 -1.80 7.36 31.18 0.23 -1.57 16 22 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 23 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 24 H -0.02 -1.15 8.10 -2.38 -0.02 -1.17 16 25 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 26 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 27 H 0.42 9.04 8.35 -92.71 -0.77 8.27 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.38 4.85 6.86 -74.05 -0.51 4.34 16 31 H 0.10 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.09 7.96 -2.39 -0.02 1.08 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.01 5.87 -2.39 -0.01 0.99 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -76.45 308.04 0.58 -75.87 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.22 Total: 14.21 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 2.91 Total: -14.24 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.24 Total: -81.94 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.90 Total: -40.67 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.45 0.58 -75.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469027059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.431 kcal (2) G-P(sol) polarization free energy of solvation -76.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds