Wall clock time and date at job start Thu Apr 9 2020 12:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48506 * 109.46797 * 240.00096 * 3 2 1 5 5 H 1.48502 * 109.47226 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46955 * 120.00399 * 3 2 1 7 7 C 1.37879 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99522 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00434 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.50026 * 59.93424 * 9 7 2 11 11 C 1.53043 * 109.52416 * 299.85798 * 9 7 2 12 12 C 1.53039 * 109.53828 * 178.66519 * 11 9 7 13 13 C 1.52762 * 109.38195 * 61.23899 * 12 11 9 14 14 N 1.46923 * 109.01163 * 305.58586 * 13 12 11 15 15 C 1.34778 * 120.63025 * 233.58899 * 14 13 12 16 16 O 1.21281 * 119.99300 * 179.71774 * 15 14 13 17 17 C 1.50690 * 120.00309 * 359.71655 * 15 14 13 18 18 H 1.09008 * 115.56062 * 325.68954 * 17 15 14 19 19 C 1.53000 * 117.50063 * 180.02562 * 17 15 14 20 20 C 1.53002 * 60.02940 * 252.49714 * 19 17 15 21 21 H 1.08999 * 117.49664 * 252.51862 * 20 19 17 22 22 F 1.39894 * 117.50008 * 107.50324 * 20 19 17 23 23 C 1.46925 * 118.73831 * 53.30779 * 14 13 12 24 24 H 0.96998 * 119.99755 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.45481 * 298.68215 * 11 9 7 26 26 H 1.08998 * 109.46040 * 58.64336 * 11 9 7 27 27 H 1.09006 * 109.49739 * 181.30938 * 12 11 9 28 28 H 1.08995 * 109.50215 * 301.38114 * 12 11 9 29 29 H 1.09004 * 109.51115 * 185.70123 * 13 12 11 30 30 H 1.09002 * 109.43286 * 65.42747 * 13 12 11 31 31 H 1.09002 * 117.49833 * 359.97438 * 19 17 15 32 32 H 1.09002 * 117.49953 * 144.99860 * 19 17 15 33 33 H 1.09007 * 109.58412 * 66.42866 * 23 14 13 34 34 H 1.08991 * 109.58860 * 186.71827 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6230 -2.5567 -0.8896 11 6 0.3739 -2.5834 1.2508 12 6 -0.4165 -3.8937 1.2345 13 6 0.5554 -5.0722 1.2447 14 7 1.5001 -4.9232 0.1293 15 6 1.6748 -5.9203 -0.7604 16 8 2.4539 -5.7829 -1.6797 17 6 0.9024 -7.2057 -0.6131 18 1 0.7059 -7.5216 0.4116 19 6 1.1456 -8.2995 -1.6549 20 6 -0.1667 -7.5128 -1.6647 21 1 -1.0662 -8.0304 -1.3316 22 9 -0.3522 -6.5789 -2.6895 23 6 2.2460 -3.6641 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 1.0047 -2.5508 2.1391 26 1 -0.3185 -1.7417 1.2661 27 1 -1.0584 -3.9423 2.1142 28 1 -1.0293 -3.9379 0.3341 29 1 -0.0001 -6.0032 1.1311 30 1 1.1020 -5.0833 2.1876 31 1 1.8641 -8.0892 -2.4471 32 1 1.1092 -9.3348 -1.3156 33 1 2.9333 -3.5579 0.8381 34 1 2.8075 -3.6672 -0.9353 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528592737.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:18 Heat of formation + Delta-G solvation = -85.712915 kcal Electronic energy + Delta-G solvation = -17820.311498 eV Core-core repulsion = 14860.194482 eV Total energy + Delta-G solvation = -2960.117016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.69048 -41.18287 -38.62900 -36.66614 -35.37180 -33.06700 -32.04082 -27.49934 -26.66752 -24.45181 -23.33958 -23.29865 -21.30482 -19.69575 -18.94422 -18.23924 -17.24614 -17.10239 -16.70852 -16.01902 -15.85011 -15.38451 -15.12549 -14.91397 -14.58940 -14.18280 -13.96298 -13.71223 -13.60589 -13.05022 -12.86882 -12.67961 -12.62146 -11.98816 -11.87217 -11.63506 -11.42235 -11.30671 -11.11282 -10.92150 -10.72464 -10.44812 -9.52652 -8.12942 -6.28894 1.38475 1.40185 1.41728 1.49281 2.02686 2.41889 2.66441 3.13293 3.17103 3.45918 3.57728 4.01093 4.08100 4.20626 4.25234 4.30913 4.50923 4.60572 4.78107 4.79439 4.83688 4.85014 4.95825 5.09608 5.14519 5.26684 5.45038 5.54643 5.58627 5.90291 6.11147 6.31394 6.52510 6.80386 7.16993 7.39346 8.90893 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.037121 B = 0.006269 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.115265 B = 4465.071596 C = 4601.480336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.041 3.959 10 H -0.020 1.020 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.109 3.891 14 N -0.603 5.603 15 C 0.523 3.477 16 O -0.598 6.598 17 C -0.212 4.212 18 H 0.183 0.817 19 C -0.149 4.149 20 C 0.036 3.964 21 H 0.194 0.806 22 F -0.211 7.211 23 C 0.129 3.871 24 H 0.262 0.738 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.039 0.961 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.065 0.935 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -16.940 5.009 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.022 3.978 10 H -0.002 1.002 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.013 4.013 14 N -0.334 5.334 15 C 0.313 3.687 16 O -0.480 6.480 17 C -0.233 4.233 18 H 0.200 0.800 19 C -0.186 4.186 20 C 0.000 4.000 21 H 0.211 0.789 22 F -0.192 7.192 23 C 0.007 3.993 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.185 0.815 33 H 0.083 0.917 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.845 -16.705 4.530 17.540 hybrid contribution 0.578 1.733 -0.517 1.898 sum -2.267 -14.972 4.013 15.666 Atomic orbital electron populations 1.70014 1.07168 1.27370 1.50732 1.25726 0.95731 1.02400 0.94436 0.85623 0.78425 0.78824 0.78859 1.20262 1.20595 1.19038 1.21414 0.93072 0.91936 1.51572 0.92960 1.18868 0.93139 0.91674 0.94111 1.00198 1.21427 0.98768 0.97239 0.97000 1.21847 0.97932 0.95036 1.01835 1.21981 0.90626 0.99960 0.88692 1.48298 1.42169 1.14629 1.28269 1.20404 0.82089 0.85530 0.80712 1.90631 1.40251 1.82660 1.34484 1.23174 1.04007 0.94785 1.01342 0.79957 1.23795 0.97237 0.98261 0.99316 1.22872 0.97213 0.92630 0.87277 0.78900 1.92804 1.96497 1.68285 1.61600 1.21554 0.94582 0.82964 1.00231 0.92853 0.94094 0.91968 0.88720 0.94230 0.86282 0.89553 0.89720 0.81494 0.91684 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.56 11.32 21.45 0.24 -53.32 16 2 C 0.02 0.92 5.30 84.65 0.45 1.37 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.54 -30.99 8.56 25.60 0.22 -30.77 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.04 2.17 2.25 -11.46 -0.03 2.15 16 10 H -0.02 -1.24 8.14 -2.38 -0.02 -1.26 16 11 C -0.11 -4.86 4.97 30.62 0.15 -4.71 16 12 C -0.13 -4.37 6.06 30.53 0.19 -4.19 16 13 C 0.11 2.99 6.27 86.22 0.54 3.53 16 14 N -0.60 -22.65 2.98 -819.74 -2.44 -25.09 16 15 C 0.52 19.43 7.12 87.65 0.62 20.06 16 16 O -0.60 -28.15 15.67 -3.03 -0.05 -28.20 16 17 C -0.21 -4.77 4.96 -11.52 -0.06 -4.83 16 18 H 0.18 2.30 6.83 -2.38 -0.02 2.29 16 19 C -0.15 -2.80 10.03 30.60 0.31 -2.49 16 20 C 0.04 0.74 7.83 30.62 0.24 0.98 16 21 H 0.19 1.86 8.14 -2.39 -0.02 1.84 16 22 F -0.21 -7.14 17.14 44.97 0.77 -6.37 16 23 C 0.13 5.98 5.66 86.36 0.49 6.47 16 24 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 3.27 6.05 -2.39 -0.01 3.26 16 27 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.12 2.18 5.68 -2.39 -0.01 2.16 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 2.21 7.67 -2.39 -0.02 2.19 16 32 H 0.17 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 34 H 0.05 2.42 7.00 -2.39 -0.02 2.40 16 Total: -1.00 -77.16 281.40 4.77 -72.39 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.09 Total: 6.53 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 3.12 Total: -12.43 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -2.20 Total: -78.41 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.05 Total: -28.20 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.77 Total: -6.37 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -77.16 4.77 -72.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528592737.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.323 kcal (2) G-P(sol) polarization free energy of solvation -77.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds