Wall clock time and date at job start Thu Apr 9 2020 12:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.53006 * 109.46950 * 60.00171 * 3 2 1 5 5 O 1.42898 * 109.47387 * 300.00353 * 3 2 1 6 6 C 1.50703 * 109.47287 * 179.97438 * 3 2 1 7 7 O 1.21280 * 119.99883 * 335.53853 * 6 3 2 8 8 N 1.34774 * 120.00140 * 155.81227 * 6 3 2 9 9 C 1.46501 * 120.00014 * 184.29979 * 8 6 3 10 10 C 1.53000 * 109.46708 * 185.03685 * 9 8 6 11 11 C 1.50696 * 115.55130 * 55.58881 * 10 9 8 12 12 H 1.07997 * 120.00255 * 272.91842 * 11 10 9 13 13 C 1.37885 * 120.00037 * 92.92337 * 11 10 9 14 14 N 1.31519 * 119.99661 * 4.38793 * 13 11 10 15 15 Si 1.86790 * 120.00040 * 184.39596 * 13 11 10 16 16 H 1.48497 * 109.47580 * 89.99652 * 15 13 11 17 17 H 1.48501 * 109.47011 * 209.99731 * 15 13 11 18 18 H 1.48499 * 109.47148 * 329.99147 * 15 13 11 19 19 C 1.53000 * 117.49811 * 269.91634 * 10 9 8 20 20 C 1.53003 * 117.49537 * 201.25606 * 10 9 8 21 21 H 1.09001 * 109.46999 * 59.99736 * 1 2 3 22 22 H 1.09003 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47187 * 299.99915 * 1 2 3 24 24 H 1.09002 * 109.47187 * 240.00085 * 2 1 3 25 25 H 1.09001 * 109.46999 * 120.00264 * 2 1 3 26 26 H 1.08997 * 109.46944 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.47257 * 299.99948 * 4 3 2 28 28 H 1.09001 * 109.47194 * 59.99745 * 4 3 2 29 29 H 0.96702 * 113.99575 * 299.99584 * 5 3 2 30 30 H 0.97008 * 119.99758 * 4.29777 * 8 6 3 31 31 H 1.08993 * 109.47113 * 305.03505 * 9 8 6 32 32 H 1.08999 * 109.47064 * 65.04273 * 9 8 6 33 33 H 0.96997 * 119.99599 * 185.00630 * 14 13 11 34 34 H 1.08998 * 117.50055 * 0.02562 * 19 10 9 35 35 H 1.09003 * 117.50089 * 145.02895 * 19 10 9 36 36 H 1.08998 * 117.50400 * 214.98023 * 20 10 9 37 37 H 1.09002 * 117.49779 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.5637 2.1162 -1.1667 6 6 3.5471 1.4425 0.0006 7 8 4.1533 0.4865 0.4360 8 7 4.2211 2.5071 -0.4775 9 6 5.6831 2.4698 -0.5643 10 6 6.2021 3.8361 -1.0168 11 6 5.7734 5.0070 -0.1706 12 1 4.8384 5.5073 -0.3748 13 6 6.5751 5.4398 0.8644 14 7 7.7526 4.8874 1.0593 15 14 5.9887 6.8105 1.9898 16 1 5.2484 6.2265 3.1370 17 1 7.1595 7.5730 2.4927 18 1 5.0920 7.7217 1.2342 19 6 6.3565 4.0704 -2.5209 20 6 7.5972 3.8899 -1.6426 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8937 3.1912 1.2496 27 1 0.4400 2.1637 1.2494 28 1 1.8934 1.6498 2.1393 29 1 1.8491 1.7127 -1.9979 30 1 3.7382 3.2982 -0.7641 31 1 6.0991 2.2289 0.4138 32 1 5.9849 1.7097 -1.2849 33 1 8.2855 5.1403 1.8293 34 1 6.0880 3.2513 -3.1880 35 1 6.1485 5.0716 -2.8983 36 1 8.2049 4.7724 -1.4427 37 1 8.1455 2.9520 -1.7316 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935781738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:35 Heat of formation + Delta-G solvation = -100.228844 kcal Electronic energy + Delta-G solvation = -18067.275869 eV Core-core repulsion = 15229.989700 eV Total energy + Delta-G solvation = -2837.286169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.25637 -38.79159 -37.97578 -35.08357 -34.01476 -33.90342 -30.59534 -28.27816 -27.28185 -25.87747 -22.98314 -22.47162 -21.36591 -20.78507 -19.06757 -18.02349 -17.04008 -16.75847 -16.65320 -16.40769 -15.79471 -15.53901 -14.95345 -14.50734 -14.22382 -13.77274 -13.56741 -13.41078 -13.37915 -12.98290 -12.94561 -12.82053 -12.76929 -12.45134 -12.37905 -12.00448 -11.83749 -11.41290 -11.39179 -11.02315 -10.54848 -10.37262 -10.07146 -9.80235 -8.11590 -6.25123 1.40266 1.42666 1.50626 1.57214 2.26861 2.41675 3.15710 3.18751 3.47654 3.68806 3.84691 3.95542 4.24483 4.44488 4.52281 4.54978 4.63435 4.68375 4.68922 4.81958 4.92213 4.97464 5.02889 5.04110 5.12872 5.29678 5.30511 5.47265 5.54378 5.59867 5.72529 5.76485 6.34990 6.51909 6.80510 6.83116 7.29971 7.44352 8.95132 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.007131 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.009720 B = 3925.421757 C = 4462.992685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.132 3.868 4 C -0.141 4.141 5 O -0.546 6.546 6 C 0.474 3.526 7 O -0.591 6.591 8 N -0.687 5.687 9 C 0.175 3.825 10 C -0.005 4.005 11 C -0.501 4.501 12 H 0.061 0.939 13 C 0.024 3.976 14 N -0.907 5.907 15 Si 0.946 3.054 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.263 1.263 19 C -0.180 4.180 20 C -0.147 4.147 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.392 0.608 30 H 0.412 0.588 31 H 0.024 0.976 32 H 0.044 0.956 33 H 0.258 0.742 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.234 -5.659 -3.964 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.088 3.912 4 C -0.198 4.198 5 O -0.354 6.354 6 C 0.260 3.740 7 O -0.473 6.473 8 N -0.336 5.336 9 C 0.051 3.949 10 C -0.006 4.006 11 C -0.539 4.539 12 H 0.080 0.920 13 C -0.177 4.177 14 N -0.545 5.545 15 Si 0.772 3.228 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.187 1.187 19 C -0.217 4.217 20 C -0.185 4.185 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.242 0.758 30 H 0.249 0.751 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.875 -5.863 -3.169 14.497 hybrid contribution 0.676 0.662 0.402 1.028 sum -12.199 -5.201 -2.767 13.547 Atomic orbital electron populations 1.21733 0.92607 1.02493 1.03038 1.21943 0.98274 0.93377 1.03321 1.21326 0.85856 0.94897 0.89084 1.21833 1.03807 1.00340 0.93862 1.86544 1.76017 1.57002 1.15811 1.22199 0.92365 0.82188 0.77258 1.90637 1.71499 1.36788 1.48387 1.45887 1.07425 1.17676 1.62616 1.20634 0.79732 0.96384 0.98197 1.19121 0.97558 0.92596 0.91282 1.20633 1.05148 1.13339 1.14737 0.92037 1.25692 0.94406 0.98443 0.99128 1.70134 1.11082 1.45053 1.28243 0.85734 0.77800 0.79831 0.79409 1.20678 1.21462 1.18692 1.23073 1.03289 1.01356 0.93958 1.22331 0.91290 1.00366 1.04512 0.91526 0.91446 0.91798 0.91483 0.91359 0.92287 0.88077 0.91005 0.75824 0.75113 0.95735 0.93766 0.93272 0.89062 0.90015 0.91526 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.41 71.98 0.68 -1.73 16 2 C -0.13 -3.01 4.70 30.59 0.14 -2.87 16 3 C 0.13 3.53 0.99 -11.54 -0.01 3.52 16 4 C -0.14 -3.57 8.47 71.98 0.61 -2.96 16 5 O -0.55 -12.57 11.70 -148.98 -1.74 -14.31 16 6 C 0.47 17.27 6.69 87.66 0.59 17.86 16 7 O -0.59 -26.01 16.07 -3.03 -0.05 -26.06 16 8 N -0.69 -26.37 5.24 -463.07 -2.43 -28.80 16 9 C 0.17 7.88 5.58 86.38 0.48 8.37 16 10 C 0.00 -0.23 1.71 -52.93 -0.09 -0.32 16 11 C -0.50 -25.77 8.31 25.60 0.21 -25.56 16 12 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 13 C 0.02 1.27 5.41 84.66 0.46 1.73 16 14 N -0.91 -51.51 11.97 21.45 0.26 -51.25 16 15 Si 0.95 42.58 29.54 68.60 2.03 44.61 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 C -0.18 -7.20 9.93 30.62 0.30 -6.90 16 20 C -0.15 -6.80 8.90 30.62 0.27 -6.53 16 21 H 0.07 1.08 7.68 -2.39 -0.02 1.06 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.02 6.43 -2.39 -0.02 1.01 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.77 7.87 -2.39 -0.02 1.75 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.10 2.01 6.43 -2.39 -0.02 1.99 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.39 6.72 9.04 -74.06 -0.67 6.05 16 30 H 0.41 14.91 7.69 -92.70 -0.71 14.20 16 31 H 0.02 1.29 8.10 -2.39 -0.02 1.27 16 32 H 0.04 1.89 8.10 -2.39 -0.02 1.88 16 33 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 34 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.07 3.42 7.68 -2.39 -0.02 3.40 16 37 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -63.02 308.10 1.39 -61.62 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.32 Total: 29.57 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 3.65 Total: -15.39 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -2.17 Total: -80.05 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.79 Total: -40.37 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -63.02 1.39 -61.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.608 kcal (2) G-P(sol) polarization free energy of solvation -63.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds