Wall clock time and date at job start Thu Apr 9 2020 12:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46923 * 120.62964 * 359.97438 * 13 11 10 15 15 C 1.53190 * 108.77809 * 233.58685 * 14 13 11 16 16 C 1.53036 * 109.31273 * 305.36826 * 15 14 13 17 17 C 1.53035 * 109.54109 * 61.36378 * 16 15 14 18 18 H 1.08995 * 109.49818 * 58.58361 * 17 16 15 19 19 C 1.53001 * 109.50075 * 178.65183 * 17 16 15 20 20 O 1.42900 * 109.47175 * 184.99873 * 19 17 16 21 21 C 1.46927 * 120.62995 * 179.71961 * 13 11 10 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.09007 * 109.58781 * 353.37617 * 14 13 11 28 28 H 1.08998 * 109.58580 * 113.65434 * 14 13 11 29 29 H 1.09001 * 109.49704 * 65.32018 * 15 14 13 30 30 H 1.09002 * 109.49744 * 185.41599 * 15 14 13 31 31 H 1.09000 * 109.46265 * 181.38787 * 16 15 14 32 32 H 1.09009 * 109.45909 * 301.35716 * 16 15 14 33 33 H 1.08998 * 109.47267 * 305.00104 * 19 17 16 34 34 H 1.09001 * 109.46903 * 64.99973 * 19 17 16 35 35 H 0.96702 * 114.00234 * 180.02562 * 20 19 17 36 36 H 1.08998 * 109.58645 * 246.19910 * 21 13 11 37 37 H 1.09001 * 109.58579 * 6.63067 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 3.6348 -6.1506 -0.0019 15 6 4.1171 -7.0173 -1.1694 16 6 3.4733 -8.4022 -1.0714 17 6 1.9519 -8.2673 -1.1663 18 1 1.6872 -7.7878 -2.1086 19 6 1.3111 -9.6552 -1.1020 20 8 -0.0983 -9.5392 -1.3071 21 6 1.4450 -7.4148 0.0065 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 4.0113 -5.1346 -0.1211 28 1 3.9966 -6.5664 0.9384 29 1 3.8321 -6.5495 -2.1118 30 1 5.2017 -7.1163 -1.1252 31 1 3.8339 -9.0289 -1.8871 32 1 3.7384 -8.8592 -0.1179 33 1 1.7401 -10.2898 -1.8774 34 1 1.5007 -10.0979 -0.1241 35 1 -0.5707 -10.3825 -1.2790 36 1 1.6316 -7.9341 0.9465 37 1 0.3763 -7.2332 -0.1072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117666392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:45 Heat of formation + Delta-G solvation = -107.966437 kcal Electronic energy + Delta-G solvation = -17585.588144 eV Core-core repulsion = 14747.966448 eV Total energy + Delta-G solvation = -2837.621696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.88688 -37.79780 -36.34887 -33.48772 -32.98810 -31.52373 -30.72552 -26.62890 -25.68737 -24.59827 -22.18494 -21.54440 -20.16611 -18.39300 -17.47612 -16.96275 -15.87915 -15.81507 -15.14444 -14.82600 -14.40911 -14.25777 -14.02842 -13.73354 -13.20153 -12.89577 -12.72318 -12.16067 -12.01685 -11.81848 -11.23514 -11.13169 -11.03892 -10.87903 -10.74974 -10.60151 -10.54233 -10.17415 -9.90490 -9.55364 -9.12396 -8.91718 -8.34218 -8.25820 -5.91931 -3.96407 3.29057 3.36675 3.36980 3.41727 3.43825 3.97859 4.50145 4.62571 4.68825 4.82674 4.89640 5.07358 5.27256 5.33215 5.38101 5.42665 5.43796 5.48692 5.59399 5.73777 5.80137 5.89609 5.98569 6.21159 6.24223 6.27284 6.28804 6.81867 6.97211 7.45874 7.78333 7.84888 7.91638 8.12108 8.43013 8.83506 9.12085 9.66729 11.19043 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041397 B = 0.004753 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.217337 B = 5889.227674 C = 6398.503783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.511 3.489 12 O -0.532 6.532 13 N -0.627 5.627 14 C 0.107 3.893 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.104 4.104 18 H 0.082 0.918 19 C 0.084 3.916 20 O -0.569 6.569 21 C 0.121 3.879 22 H 0.261 0.739 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.377 0.623 36 H 0.057 0.943 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -20.383 -1.510 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.302 3.698 12 O -0.407 6.407 13 N -0.363 5.363 14 C -0.016 4.016 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.123 4.123 18 H 0.100 0.900 19 C 0.005 3.995 20 O -0.373 6.373 21 C -0.002 4.002 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.224 0.776 36 H 0.075 0.925 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.150 -19.589 -1.549 21.273 hybrid contribution 0.481 0.183 0.025 0.516 sum 8.631 -19.406 -1.524 21.293 Atomic orbital electron populations 1.69995 1.06058 1.26647 1.50130 1.25026 0.94813 0.99181 0.95335 0.86654 0.79540 0.83224 0.78508 1.21294 1.20267 1.20273 1.21184 0.92847 0.91035 1.51463 0.92694 1.18907 0.93200 0.89367 0.98617 1.21871 1.00693 0.92035 1.02159 1.21585 0.88439 0.85486 0.74316 1.90662 1.14418 1.87138 1.48523 1.48314 1.06392 1.05945 1.75608 1.21693 0.80305 1.01731 0.97915 1.21908 1.00207 0.95513 0.99637 1.21486 0.93851 0.97472 1.02067 1.21611 0.94862 0.94940 1.00937 0.89965 1.22161 0.81492 0.96627 0.99180 1.86577 1.19493 1.35591 1.95688 1.21522 0.98951 0.83561 0.96161 0.92915 0.95844 0.95840 0.90346 0.90355 0.88957 0.91832 0.91190 0.90598 0.91714 0.91678 0.93608 0.93614 0.77620 0.92487 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.92 13.29 55.43 0.74 -27.18 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.23 9.11 -34.44 -0.31 -15.54 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 10 C -0.13 -2.72 3.99 -27.89 -0.11 -2.83 16 11 C 0.51 10.69 7.70 -10.98 -0.08 10.61 16 12 O -0.53 -13.49 15.39 5.56 0.09 -13.40 16 13 N -0.63 -10.00 2.97 -172.52 -0.51 -10.51 16 14 C 0.11 1.26 6.34 -3.71 -0.02 1.24 16 15 C -0.13 -1.28 6.08 -26.61 -0.16 -1.45 16 16 C -0.11 -0.98 5.16 -26.69 -0.14 -1.11 16 17 C -0.10 -1.19 2.59 -90.29 -0.23 -1.42 16 18 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 19 C 0.08 0.77 6.43 37.16 0.24 1.01 16 20 O -0.57 -6.20 13.32 -35.23 -0.47 -6.67 16 21 C 0.12 1.75 5.58 -3.50 -0.02 1.73 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 24 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.08 1.53 7.69 -51.93 -0.40 1.13 16 26 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 27 H 0.09 1.10 5.93 -51.93 -0.31 0.79 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 2.20 9.12 45.56 0.42 2.61 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.73 6.86 -51.93 -0.36 1.38 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -35.96 301.59 -6.95 -42.91 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.25 Total: -1.33 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.06 Total: -5.26 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.22 Total: -37.69 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.38 Total: -20.08 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.96 -6.95 -42.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117666392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.061 kcal (2) G-P(sol) polarization free energy of solvation -35.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds