Wall clock time and date at job start Thu Apr 9 2020 12:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.21277 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99464 * 179.97438 * 10 9 7 13 13 C 1.46920 * 120.63490 * 0.02562 * 12 10 9 14 14 C 1.53193 * 108.78044 * 126.36891 * 13 12 10 15 15 C 1.53039 * 109.31294 * 54.63288 * 14 13 12 16 16 C 1.53047 * 109.53774 * 298.63851 * 15 14 13 17 17 H 1.09002 * 109.49727 * 301.37836 * 16 15 14 18 18 C 1.52995 * 109.49649 * 181.31762 * 16 15 14 19 19 C 1.52998 * 109.47188 * 175.00165 * 18 16 15 20 20 O 1.42901 * 109.47322 * 179.97438 * 19 18 16 21 21 C 1.46933 * 120.62921 * 179.71825 * 12 10 9 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09002 * 109.58960 * 246.15470 * 13 12 10 26 26 H 1.08995 * 109.58719 * 6.43474 * 13 12 10 27 27 H 1.08998 * 109.49923 * 174.58513 * 14 13 12 28 28 H 1.09001 * 109.49398 * 294.68482 * 14 13 12 29 29 H 1.09002 * 109.46101 * 58.65812 * 15 14 13 30 30 H 1.08996 * 109.46147 * 178.63150 * 15 14 13 31 31 H 1.09006 * 109.47401 * 294.99594 * 18 16 15 32 32 H 1.08994 * 109.47561 * 54.99694 * 18 16 15 33 33 H 1.09003 * 109.46925 * 299.99386 * 19 18 16 34 34 H 1.09003 * 109.47517 * 59.99834 * 19 18 16 35 35 H 0.96702 * 114.00342 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.58409 * 353.41904 * 21 12 10 37 37 H 1.08996 * 109.58824 * 113.84302 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 8 3.2257 -3.5367 0.0097 12 7 5.3389 -2.8612 0.0162 13 6 6.3059 -1.7550 0.0180 14 6 7.2735 -1.9478 1.1900 15 6 7.9082 -3.3374 1.0989 16 6 6.8165 -4.4059 1.1930 17 1 6.2768 -4.2927 2.1332 18 6 7.4552 -5.7949 1.1349 19 6 6.3794 -6.8605 1.3538 20 8 6.9758 -8.1580 1.2989 21 6 5.8439 -4.2409 0.0273 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 6.8626 -1.7547 -0.9191 26 1 5.7777 -0.8081 0.1295 27 1 8.0537 -1.1879 1.1464 28 1 6.7290 -1.8574 2.1299 29 1 8.4318 -3.4359 0.1480 30 1 8.6154 -3.4680 1.9180 31 1 7.9184 -5.9414 0.1591 32 1 8.2136 -5.8790 1.9133 33 1 5.9163 -6.7142 2.3296 34 1 5.6210 -6.7765 0.5753 35 1 6.3509 -8.8841 1.4302 36 1 5.0111 -4.9338 0.1474 37 1 6.3619 -4.4480 -0.9091 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143196598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:13 Heat of formation + Delta-G solvation = -131.668339 kcal Electronic energy + Delta-G solvation = -17786.938194 eV Core-core repulsion = 14948.288706 eV Total energy + Delta-G solvation = -2838.649488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15404 -38.93014 -37.64486 -35.16216 -34.82359 -32.90933 -31.80993 -29.27583 -26.84082 -24.94753 -24.51086 -22.32932 -21.26853 -19.85611 -19.15804 -18.30797 -17.49178 -17.16726 -16.50469 -16.20078 -15.79461 -15.47311 -15.34749 -14.89409 -14.49797 -14.26340 -14.07997 -13.79261 -13.43145 -13.33498 -12.96133 -12.58572 -12.41522 -12.24835 -11.96271 -11.85603 -11.81392 -11.68794 -11.41140 -11.28616 -10.86352 -10.79748 -10.52873 -9.55041 -8.27266 -6.36172 1.38194 1.43010 1.53290 1.80922 2.15107 2.37754 3.05808 3.22680 3.71942 3.82981 3.93892 4.11488 4.12864 4.23843 4.32325 4.39396 4.49414 4.57959 4.63780 4.65567 4.83900 4.87401 4.91145 4.97260 5.02636 5.09425 5.14758 5.23303 5.28127 5.45981 5.49653 5.72286 6.22949 6.51977 6.80797 6.81486 7.24138 7.42978 8.90523 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033790 B = 0.005764 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.460286 B = 4856.338227 C = 5532.489757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.228 1.228 7 C -0.536 4.536 8 H 0.026 0.974 9 C -0.021 4.021 10 C 0.517 3.483 11 O -0.590 6.590 12 N -0.618 5.618 13 C 0.095 3.905 14 C -0.131 4.131 15 C -0.106 4.106 16 C -0.092 4.092 17 H 0.060 0.940 18 C -0.102 4.102 19 C 0.068 3.932 20 O -0.590 6.590 21 C 0.110 3.890 22 H 0.268 0.732 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.396 0.604 36 H 0.061 0.939 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.207 -5.198 2.574 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.151 1.151 7 C -0.574 4.574 8 H 0.044 0.956 9 C -0.061 4.061 10 C 0.308 3.692 11 O -0.469 6.469 12 N -0.352 5.352 13 C -0.027 4.027 14 C -0.169 4.169 15 C -0.144 4.144 16 C -0.112 4.112 17 H 0.079 0.921 18 C -0.140 4.140 19 C -0.010 4.010 20 O -0.399 6.399 21 C -0.013 4.013 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.245 0.755 36 H 0.079 0.921 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.180 -5.228 2.464 22.921 hybrid contribution -1.399 0.029 0.075 1.401 sum 20.782 -5.199 2.539 21.572 Atomic orbital electron populations 1.70097 1.08833 1.28458 1.52008 1.26164 0.95802 1.03937 0.93565 0.85546 0.79899 0.76723 0.79739 1.18475 1.21021 1.15084 1.21188 0.91033 0.93667 1.51510 0.95564 1.19562 0.95646 0.90889 0.99972 1.21279 0.81647 0.92525 0.73791 1.90542 1.56639 1.48159 1.51605 1.48311 1.04999 1.08157 1.73741 1.22064 0.90798 0.89281 1.00507 1.21932 0.98840 0.98661 0.97481 1.21544 0.96500 0.92563 1.03768 1.21323 0.96598 0.95541 0.97698 0.92148 1.21424 0.97658 0.91100 1.03772 1.22300 0.95625 0.83273 0.99767 1.86378 1.40988 1.16448 1.96057 1.21645 0.97373 0.82946 0.99308 0.92272 0.91680 0.91565 0.89282 0.89593 0.87631 0.92646 0.90193 0.89784 0.90513 0.89907 0.93690 0.94203 0.75480 0.92069 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.96 42.11 27.47 68.60 1.88 43.99 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.23 -8.55 6.54 99.48 0.65 -7.90 16 7 C -0.54 -32.93 9.48 25.60 0.24 -32.69 16 8 H 0.03 1.90 7.00 -2.91 -0.02 1.88 16 9 C -0.02 -1.00 2.87 29.10 0.08 -0.91 16 10 C 0.52 23.71 7.69 87.66 0.67 24.38 16 11 O -0.59 -32.98 14.87 -3.02 -0.04 -33.02 16 12 N -0.62 -20.41 2.98 -819.84 -2.44 -22.85 16 13 C 0.10 2.22 6.34 86.36 0.55 2.77 16 14 C -0.13 -2.30 6.08 30.67 0.19 -2.11 16 15 C -0.11 -1.67 5.17 30.62 0.16 -1.51 16 16 C -0.09 -1.95 2.32 -10.87 -0.03 -1.97 16 17 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 18 C -0.10 -1.89 5.06 30.59 0.15 -1.74 16 19 C 0.07 1.43 6.80 71.98 0.49 1.92 16 20 O -0.59 -11.94 13.66 -148.98 -2.04 -13.98 16 21 C 0.11 3.09 5.30 86.20 0.46 3.54 16 22 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 23 H 0.07 2.75 7.37 -2.38 -0.02 2.73 16 24 H 0.07 2.84 6.75 -2.39 -0.02 2.82 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 2.10 5.93 -2.39 -0.01 2.08 16 27 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.04 0.92 6.70 -2.39 -0.02 0.91 16 35 H 0.40 4.73 9.12 -74.06 -0.68 4.06 16 36 H 0.06 2.09 5.72 -2.39 -0.01 2.08 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -81.34 294.59 1.42 -79.92 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.33 Total: 15.19 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 3.43 Total: -7.75 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.14 Total: -84.35 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -2.08 Total: -47.00 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 43.99 kcal Total: -81.34 1.42 -79.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.748 kcal (2) G-P(sol) polarization free energy of solvation -81.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds