Wall clock time and date at job start Thu Apr 9 2020 12:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.48174 * 2 1 4 4 C 1.53099 * 109.47634 * 239.96836 * 2 1 3 5 5 C 1.53174 * 109.15867 * 182.40846 * 4 2 1 6 6 H 1.08998 * 109.61879 * 297.06736 * 5 4 2 7 7 N 1.46506 * 109.54187 * 176.84391 * 5 4 2 8 8 C 1.34778 * 119.99948 * 155.43893 * 7 5 4 9 9 O 1.21281 * 120.00174 * 0.02562 * 8 7 5 10 10 C 1.50696 * 119.99834 * 180.02562 * 8 7 5 11 11 C 1.50706 * 109.47259 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 10 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.53175 * 109.03895 * 56.98186 * 5 4 2 20 20 C 1.53092 * 109.16333 * 303.01372 * 19 5 4 21 21 O 1.42902 * 109.48327 * 120.02569 * 2 1 3 22 22 H 1.09000 * 109.46537 * 299.97401 * 1 2 3 23 23 H 1.08998 * 109.47135 * 59.97167 * 1 2 3 24 24 H 1.08997 * 109.47202 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47426 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47523 * 300.02717 * 3 2 1 27 27 H 1.09001 * 109.47348 * 60.02864 * 3 2 1 28 28 H 1.08998 * 109.52315 * 62.50204 * 4 2 1 29 29 H 1.09001 * 109.52279 * 302.31231 * 4 2 1 30 30 H 0.96998 * 119.99902 * 335.45166 * 7 5 4 31 31 H 1.09001 * 109.47545 * 60.00704 * 10 8 7 32 32 H 1.09006 * 109.47511 * 300.00370 * 10 8 7 33 33 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 34 34 H 1.09000 * 109.52325 * 62.92511 * 19 5 4 35 35 H 1.09004 * 109.52523 * 183.04782 * 19 5 4 36 36 H 1.08996 * 109.48461 * 177.58867 * 20 19 5 37 37 H 1.08994 * 109.48442 * 297.62919 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4423 0.0000 4 6 2.0405 -0.7224 -1.2496 5 6 3.5710 -0.7710 -1.2122 6 1 3.9702 0.2428 -1.2417 7 7 4.0657 -1.5262 -2.3660 8 6 5.3109 -1.3057 -2.8321 9 8 6.0222 -0.4825 -2.2961 10 6 5.8195 -2.0822 -4.0193 11 6 7.2283 -1.6504 -4.3359 12 1 7.7075 -0.8901 -3.7369 13 6 7.9053 -2.2260 -5.3900 14 7 7.3216 -3.1515 -6.1197 15 14 9.6512 -1.6903 -5.7828 16 1 10.1524 -2.4555 -6.9526 17 1 9.6648 -0.2390 -6.0972 18 1 10.5246 -1.9510 -4.6103 19 6 4.0176 -1.4601 0.0808 20 6 3.4308 -0.7093 1.2790 21 8 2.0067 -0.6741 1.1664 22 1 -0.3632 0.5134 0.8902 23 1 -0.3633 0.5143 -0.8897 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1303 1.4422 -0.0005 26 1 1.6767 1.9564 -0.8897 27 1 1.6775 1.9561 0.8902 28 1 1.7148 -0.1845 -2.1399 29 1 1.6442 -1.7376 -1.2709 30 1 3.4969 -2.1848 -2.7946 31 1 5.1786 -1.8912 -4.8801 32 1 5.8096 -3.1474 -3.7882 33 1 6.4148 -3.4294 -5.9159 34 1 3.6613 -2.4902 0.0864 35 1 5.1059 -1.4509 0.1415 36 1 3.7100 -1.2202 2.2004 37 1 3.8193 0.3090 1.2957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:15 Heat of formation + Delta-G solvation = -131.272767 kcal Electronic energy + Delta-G solvation = -17865.573850 eV Core-core repulsion = 15026.941515 eV Total energy + Delta-G solvation = -2838.632335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.45875 -40.09740 -36.30634 -35.46558 -34.59759 -32.79372 -30.47942 -28.94633 -28.25147 -25.79678 -24.71238 -22.95418 -21.54124 -20.29932 -18.99176 -18.04972 -17.45272 -17.14608 -16.48202 -16.12736 -15.68489 -15.64865 -15.22314 -15.06760 -14.70954 -14.15600 -13.95480 -13.47681 -13.33120 -12.98791 -12.91874 -12.86425 -12.71013 -12.52021 -12.35221 -12.15782 -11.99327 -11.92046 -11.25851 -11.01128 -10.76659 -10.61461 -10.37918 -10.08426 -8.72687 -6.42353 1.52236 1.59553 1.74132 1.81346 2.22986 2.55612 2.75612 3.11625 3.54638 3.72950 3.77844 3.99685 4.01443 4.10488 4.22141 4.32209 4.44499 4.56592 4.64187 4.70344 4.76917 4.79302 4.86354 4.94726 4.96895 4.99661 5.02881 5.04460 5.28307 5.36124 5.51379 5.79407 6.19011 6.24813 6.45832 6.71011 7.28852 7.41510 8.69567 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050337 B = 0.004734 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.115298 B = 5913.276692 C = 6058.543076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.111 3.889 3 C -0.183 4.183 4 C -0.141 4.141 5 C 0.140 3.860 6 H 0.066 0.934 7 N -0.722 5.722 8 C 0.524 3.476 9 O -0.580 6.580 10 C -0.009 4.009 11 C -0.613 4.613 12 H 0.047 0.953 13 C -0.029 4.029 14 N -0.931 5.931 15 Si 1.117 2.883 16 H -0.275 1.275 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.163 4.163 20 C 0.067 3.933 21 O -0.382 6.382 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.410 0.590 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.161 4.952 12.421 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.072 3.928 3 C -0.240 4.240 4 C -0.179 4.179 5 C 0.035 3.965 6 H 0.084 0.916 7 N -0.374 5.374 8 C 0.312 3.688 9 O -0.459 6.459 10 C -0.049 4.049 11 C -0.651 4.651 12 H 0.065 0.935 13 C -0.227 4.227 14 N -0.568 5.568 15 Si 0.938 3.062 16 H -0.200 1.200 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.202 4.202 20 C -0.010 4.010 21 O -0.301 6.301 22 H 0.088 0.912 23 H 0.106 0.894 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.246 0.754 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.539 5.202 11.907 18.765 hybrid contribution -1.100 -0.129 0.531 1.228 sum -14.638 5.073 12.438 19.867 Atomic orbital electron populations 1.21760 0.90221 1.03385 1.03631 1.21609 0.96220 0.91034 0.83985 1.22497 1.01336 0.96332 1.03833 1.22472 0.92293 1.03230 0.99919 1.21057 0.95014 0.95442 0.84975 0.91555 1.46095 1.15026 1.43224 1.33086 1.21148 0.81013 0.81989 0.84607 1.90511 1.57726 1.36756 1.60930 1.19242 0.97407 0.95972 0.92277 1.22224 0.99867 1.25307 1.17743 0.93466 1.27299 1.09047 0.93698 0.92635 1.70937 1.15413 1.29803 1.40619 0.82920 0.70221 0.76308 0.76702 1.19965 1.19939 1.20009 1.22559 1.00774 1.01159 0.95693 1.22546 0.80789 0.99846 0.97789 1.87945 1.20953 1.77615 1.43617 0.91176 0.89437 0.91564 0.93304 0.90309 0.90743 0.89273 0.89521 0.75418 0.94376 0.94511 0.93090 0.90544 0.92862 0.87044 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.85 71.98 0.64 -1.26 16 2 C 0.11 2.14 1.11 -10.76 -0.01 2.13 16 3 C -0.18 -3.43 7.93 71.98 0.57 -2.86 16 4 C -0.14 -2.96 4.39 30.69 0.13 -2.83 16 5 C 0.14 4.05 2.23 45.11 0.10 4.15 16 6 H 0.07 2.24 6.07 -2.39 -0.01 2.22 16 7 N -0.72 -24.44 5.09 -441.97 -2.25 -26.69 16 8 C 0.52 24.32 7.79 87.66 0.68 25.00 16 9 O -0.58 -31.22 15.13 -3.03 -0.05 -31.26 16 10 C -0.01 -0.49 4.77 29.10 0.14 -0.35 16 11 C -0.61 -36.89 8.92 25.60 0.23 -36.66 16 12 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 13 C -0.03 -1.69 5.46 84.65 0.46 -1.22 16 14 N -0.93 -56.42 13.65 21.45 0.29 -56.12 16 15 Si 1.12 52.09 29.90 68.60 2.05 54.14 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.16 -4.51 5.71 30.68 0.18 -4.33 16 20 C 0.07 1.53 6.52 72.01 0.47 2.00 16 21 O -0.38 -8.62 10.24 -148.98 -1.52 -10.15 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 1.09 4.98 -2.38 -0.01 1.08 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.41 11.43 8.60 -92.71 -0.80 10.63 16 31 H 0.04 1.95 8.01 -2.39 -0.02 1.93 16 32 H 0.04 1.89 8.01 -2.38 -0.02 1.87 16 33 H 0.26 15.48 7.22 -92.71 -0.67 14.82 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 1.26 6.34 -2.39 -0.02 1.24 16 Total: -1.00 -72.11 296.41 2.47 -69.64 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.36 Total: 16.69 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 3.59 Total: -16.24 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.96 Total: -82.81 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -1.57 Total: -41.41 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 2.05 Total: 54.14 kcal Total: -72.11 2.47 -69.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.634 kcal (2) G-P(sol) polarization free energy of solvation -72.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds