Wall clock time and date at job start Thu Apr 9 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37095 * 119.99959 * 2 1 4 4 H 1.08003 * 119.99852 * 141.51080 * 3 2 1 5 5 C 1.38948 * 120.00339 * 321.51035 * 3 2 1 6 6 N 1.31410 * 119.99945 * 156.26335 * 5 3 2 7 7 Si 1.86797 * 119.99838 * 336.26587 * 5 3 2 8 8 H 1.48499 * 109.47360 * 92.80805 * 7 5 3 9 9 H 1.48506 * 109.47036 * 212.80576 * 7 5 3 10 10 H 1.48496 * 109.47315 * 332.80596 * 7 5 3 11 11 C 1.34779 * 119.99996 * 180.02562 * 2 1 3 12 12 O 1.21284 * 120.00135 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99787 * 359.97438 * 11 2 1 14 14 H 1.08996 * 109.54457 * 59.99715 * 13 11 2 15 15 C 1.53185 * 109.61742 * 299.77842 * 13 11 2 16 16 C 1.53087 * 109.16329 * 183.10737 * 15 13 11 17 17 O 1.42910 * 109.41294 * 57.61235 * 16 15 13 18 18 C 1.42901 * 114.09308 * 298.83505 * 17 16 15 19 19 C 1.52994 * 109.48793 * 301.17666 * 18 17 16 20 20 C 1.53008 * 109.48937 * 181.14670 * 18 17 16 21 21 C 1.53095 * 109.41305 * 61.16523 * 18 17 16 22 22 H 1.09001 * 109.47306 * 267.12930 * 1 2 3 23 23 H 1.09007 * 109.47182 * 27.12558 * 1 2 3 24 24 H 1.09003 * 109.47749 * 147.12355 * 1 2 3 25 25 H 0.97001 * 119.99806 * 179.97438 * 6 5 3 26 26 H 1.09000 * 109.52021 * 303.01506 * 15 13 11 27 27 H 1.08995 * 109.51925 * 63.20105 * 15 13 11 28 28 H 1.08994 * 109.48631 * 297.62972 * 16 15 13 29 29 H 1.08999 * 109.47957 * 177.58888 * 16 15 13 30 30 H 1.08996 * 109.47485 * 179.97438 * 19 18 17 31 31 H 1.08999 * 109.47126 * 299.94791 * 19 18 17 32 32 H 1.09005 * 109.46646 * 59.94403 * 19 18 17 33 33 H 1.08999 * 109.46827 * 300.06098 * 20 18 17 34 34 H 1.08997 * 109.46655 * 60.05182 * 20 18 17 35 35 H 1.08995 * 109.47048 * 180.02562 * 20 18 17 36 36 H 1.08997 * 109.52177 * 182.48033 * 21 18 17 37 37 H 1.08994 * 109.57594 * 62.32414 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0545 1.2889 0.5821 5 6 1.6822 2.2599 -0.7489 6 7 2.0180 3.4871 -0.4202 7 14 0.5752 1.9574 -2.2228 8 1 -0.8459 2.0312 -1.7981 9 1 0.8365 2.9894 -3.2582 10 1 0.8548 0.6113 -2.7840 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 1 0.7578 -2.5311 -0.8898 15 6 0.5080 -2.5596 1.2522 16 6 -0.1926 -3.9205 1.2812 17 8 0.7875 -4.9601 1.2519 18 6 1.6062 -4.9571 0.0806 19 6 0.7229 -5.1043 -1.1599 20 6 2.5938 -6.1240 0.1451 21 6 2.3791 -3.6378 0.0034 22 1 -0.3634 -0.0515 1.0264 23 1 -0.3634 0.9147 -0.4686 24 1 -0.3635 -0.8631 -0.5578 25 1 1.6914 4.2359 -0.9433 26 1 1.1300 -2.4511 2.1407 27 1 -0.2386 -1.7659 1.2300 28 1 -0.8454 -4.0119 0.4132 29 1 -0.7849 -4.0050 2.1923 30 1 1.3475 -5.1016 -2.0531 31 1 0.1727 -6.0436 -1.1047 32 1 0.0192 -4.2732 -1.2055 33 1 3.2227 -6.0191 1.0292 34 1 2.0434 -7.0631 0.2002 35 1 3.2184 -6.1211 -0.7481 36 1 2.9706 -3.6153 -0.9119 37 1 3.0396 -3.5505 0.8660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182025595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:25 Heat of formation + Delta-G solvation = -74.992310 kcal Electronic energy + Delta-G solvation = -18662.696856 eV Core-core repulsion = 15826.505025 eV Total energy + Delta-G solvation = -2836.191831 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.23602 -38.27827 -34.88783 -33.48019 -33.36180 -31.84865 -28.17077 -27.32363 -26.56738 -25.58230 -23.49755 -22.13992 -19.29276 -18.59603 -17.10415 -16.37513 -15.87679 -15.85745 -15.47839 -14.66852 -14.14051 -13.96215 -13.79832 -13.22337 -12.93512 -12.72198 -12.46995 -12.30515 -12.11644 -11.96059 -11.77464 -11.70947 -11.49381 -11.08334 -10.86097 -10.80616 -10.49460 -10.26861 -9.95879 -9.93341 -9.41333 -9.04034 -8.38271 -7.72229 -6.41644 -3.97286 3.00429 3.20023 3.25384 3.72052 3.84173 4.13641 4.39479 4.82876 4.87335 4.94519 5.08131 5.13261 5.16378 5.33307 5.50515 5.54813 5.58071 5.70478 5.72760 5.76837 5.79603 5.92957 5.95641 6.06491 6.08405 6.11181 6.20474 6.28346 6.36740 6.46694 6.62241 7.38093 7.54438 8.29523 8.51481 8.97093 9.31586 9.78677 10.70719 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038396 B = 0.007059 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.062940 B = 3965.426132 C = 4071.258759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.470 5.470 3 C -0.318 4.318 4 H 0.104 0.896 5 C 0.061 3.939 6 N -0.862 5.862 7 Si 0.875 3.125 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.265 1.265 11 C 0.470 3.530 12 O -0.564 6.564 13 C -0.106 4.106 14 H 0.084 0.916 15 C -0.158 4.158 16 C 0.062 3.938 17 O -0.376 6.376 18 C 0.109 3.891 19 C -0.179 4.179 20 C -0.135 4.135 21 C -0.116 4.116 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.274 0.726 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 -15.042 -0.407 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.192 5.192 3 C -0.445 4.445 4 H 0.121 0.879 5 C -0.145 4.145 6 N -0.498 5.498 7 Si 0.703 3.297 8 H -0.202 1.202 9 H -0.213 1.213 10 H -0.190 1.190 11 C 0.258 3.742 12 O -0.445 6.445 13 C -0.128 4.128 14 H 0.102 0.898 15 C -0.196 4.196 16 C -0.015 4.015 17 O -0.296 6.296 18 C 0.070 3.930 19 C -0.237 4.237 20 C -0.192 4.192 21 C -0.154 4.154 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.703 -14.937 -0.296 16.375 hybrid contribution -0.796 0.427 -1.085 1.412 sum -7.499 -14.511 -1.382 16.392 Atomic orbital electron populations 1.22158 0.83723 1.01446 1.00842 1.43646 1.03886 1.05681 1.66010 1.19025 1.11150 0.85806 1.28522 0.87885 1.25370 0.97209 0.94738 0.97213 1.69786 1.44220 0.98153 1.37644 0.87011 0.79919 0.79011 0.83791 1.20172 1.21313 1.18984 1.20220 0.88066 0.84554 0.81378 1.90542 1.13943 1.86958 1.53074 1.21337 0.97712 0.94825 0.98918 0.89763 1.22441 1.00226 0.98475 0.98479 1.22570 0.90464 0.86705 1.01733 1.87921 1.48632 1.51517 1.41519 1.21541 0.90672 0.95570 0.85198 1.22458 1.00705 1.02197 0.98308 1.21726 0.98150 0.96666 1.02686 1.21930 0.97522 0.91848 1.04109 0.92770 0.91604 0.92790 0.91611 0.90650 0.89449 0.93069 0.89007 0.91460 0.92104 0.91880 0.91759 0.92146 0.91141 0.90606 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.21 7.54 59.84 0.45 1.66 16 2 N -0.47 -11.49 2.55 -122.19 -0.31 -11.80 16 3 C -0.32 -9.14 9.32 -14.93 -0.14 -9.28 16 4 H 0.10 3.34 7.93 -52.48 -0.42 2.92 16 5 C 0.06 1.69 5.25 -17.47 -0.09 1.60 16 6 N -0.86 -25.07 13.96 55.50 0.77 -24.29 16 7 Si 0.88 20.59 25.30 -169.99 -4.30 16.29 16 8 H -0.27 -5.94 6.55 56.52 0.37 -5.57 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 C 0.47 11.05 7.04 -10.98 -0.08 10.98 16 12 O -0.56 -15.51 15.85 5.55 0.09 -15.42 16 13 C -0.11 -1.86 1.49 -91.59 -0.14 -1.99 16 14 H 0.08 1.35 5.88 -51.93 -0.31 1.05 16 15 C -0.16 -2.37 5.05 -26.59 -0.13 -2.50 16 16 C 0.06 0.77 6.52 37.20 0.24 1.01 16 17 O -0.38 -5.34 10.24 -35.23 -0.36 -5.70 16 18 C 0.11 1.45 1.11 -90.57 -0.10 1.35 16 19 C -0.18 -2.06 7.93 37.15 0.29 -1.76 16 20 C -0.14 -1.53 8.85 37.16 0.33 -1.21 16 21 C -0.12 -1.89 3.52 -26.59 -0.09 -1.99 16 22 H 0.05 0.93 6.83 -51.93 -0.35 0.58 16 23 H 0.07 1.37 3.59 -51.92 -0.19 1.18 16 24 H 0.05 0.87 6.21 -51.93 -0.32 0.55 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.22 4.62 -51.93 -0.24 0.98 16 28 H 0.05 0.57 6.34 -51.93 -0.33 0.24 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.73 4.97 -51.93 -0.26 0.47 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 LS Contribution 280.12 15.07 4.22 4.22 Total: -1.00 -32.42 280.12 -4.72 -37.14 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.38 Total: 1.70 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 0.54 Total: -2.14 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.46 Total: -36.09 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.27 Total: -21.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.30 Total: 16.29 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.42 -4.72 -37.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182025595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.854 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds