Wall clock time and date at job start Thu Apr 9 2020 12:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37095 * 119.99959 * 2 1 4 4 H 1.08003 * 119.99852 * 141.51080 * 3 2 1 5 5 C 1.38948 * 120.00339 * 321.51035 * 3 2 1 6 6 N 1.31410 * 119.99945 * 156.26335 * 5 3 2 7 7 Si 1.86797 * 119.99838 * 336.26587 * 5 3 2 8 8 H 1.48499 * 109.47360 * 92.80805 * 7 5 3 9 9 H 1.48506 * 109.47036 * 212.80576 * 7 5 3 10 10 H 1.48496 * 109.47315 * 332.80596 * 7 5 3 11 11 C 1.34779 * 119.99996 * 180.02562 * 2 1 3 12 12 O 1.21284 * 120.00135 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99787 * 359.97438 * 11 2 1 14 14 H 1.08996 * 109.54457 * 59.99715 * 13 11 2 15 15 C 1.53185 * 109.61742 * 299.77842 * 13 11 2 16 16 C 1.53087 * 109.16329 * 183.10737 * 15 13 11 17 17 O 1.42910 * 109.41294 * 57.61235 * 16 15 13 18 18 C 1.42901 * 114.09308 * 298.83505 * 17 16 15 19 19 C 1.52994 * 109.48793 * 301.17666 * 18 17 16 20 20 C 1.53008 * 109.48937 * 181.14670 * 18 17 16 21 21 C 1.53095 * 109.41305 * 61.16523 * 18 17 16 22 22 H 1.09001 * 109.47306 * 267.12930 * 1 2 3 23 23 H 1.09007 * 109.47182 * 27.12558 * 1 2 3 24 24 H 1.09003 * 109.47749 * 147.12355 * 1 2 3 25 25 H 0.97001 * 119.99806 * 179.97438 * 6 5 3 26 26 H 1.09000 * 109.52021 * 303.01506 * 15 13 11 27 27 H 1.08995 * 109.51925 * 63.20105 * 15 13 11 28 28 H 1.08994 * 109.48631 * 297.62972 * 16 15 13 29 29 H 1.08999 * 109.47957 * 177.58888 * 16 15 13 30 30 H 1.08996 * 109.47485 * 179.97438 * 19 18 17 31 31 H 1.08999 * 109.47126 * 299.94791 * 19 18 17 32 32 H 1.09005 * 109.46646 * 59.94403 * 19 18 17 33 33 H 1.08999 * 109.46827 * 300.06098 * 20 18 17 34 34 H 1.08997 * 109.46655 * 60.05182 * 20 18 17 35 35 H 1.08995 * 109.47048 * 180.02562 * 20 18 17 36 36 H 1.08997 * 109.52177 * 182.48033 * 21 18 17 37 37 H 1.08994 * 109.57594 * 62.32414 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0545 1.2889 0.5821 5 6 1.6822 2.2599 -0.7489 6 7 2.0180 3.4871 -0.4202 7 14 0.5752 1.9574 -2.2228 8 1 -0.8459 2.0312 -1.7981 9 1 0.8365 2.9894 -3.2582 10 1 0.8548 0.6113 -2.7840 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 1 0.7578 -2.5311 -0.8898 15 6 0.5080 -2.5596 1.2522 16 6 -0.1926 -3.9205 1.2812 17 8 0.7875 -4.9601 1.2519 18 6 1.6062 -4.9571 0.0806 19 6 0.7229 -5.1043 -1.1599 20 6 2.5938 -6.1240 0.1451 21 6 2.3791 -3.6378 0.0034 22 1 -0.3634 -0.0515 1.0264 23 1 -0.3634 0.9147 -0.4686 24 1 -0.3635 -0.8631 -0.5578 25 1 1.6914 4.2359 -0.9433 26 1 1.1300 -2.4511 2.1407 27 1 -0.2386 -1.7659 1.2300 28 1 -0.8454 -4.0119 0.4132 29 1 -0.7849 -4.0050 2.1923 30 1 1.3475 -5.1016 -2.0531 31 1 0.1727 -6.0436 -1.1047 32 1 0.0192 -4.2732 -1.2055 33 1 3.2227 -6.0191 1.0292 34 1 2.0434 -7.0631 0.2002 35 1 3.2184 -6.1211 -0.7481 36 1 2.9706 -3.6153 -0.9119 37 1 3.0396 -3.5505 0.8660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182025595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:23 Heat of formation + Delta-G solvation = -98.392556 kcal Electronic energy + Delta-G solvation = -18663.711567 eV Core-core repulsion = 15826.505025 eV Total energy + Delta-G solvation = -2837.206542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.58245 -39.85901 -36.82435 -34.86633 -34.52856 -33.78370 -29.28768 -28.41281 -28.13697 -27.30822 -24.98835 -23.37282 -20.69652 -20.05185 -19.13019 -17.98275 -17.50334 -16.97230 -16.88449 -16.08269 -15.65393 -15.42541 -15.19402 -14.73796 -14.41851 -14.12363 -14.01078 -13.82852 -13.43257 -13.26048 -12.93330 -12.85258 -12.72907 -12.56661 -12.26431 -12.15671 -12.01972 -11.88631 -11.63039 -11.09280 -11.00640 -10.61546 -10.12280 -9.71747 -8.55982 -6.18154 1.16784 1.30448 1.43453 1.90412 2.15265 2.66332 2.87313 2.92236 3.64945 3.72609 3.83664 3.90857 4.10025 4.18076 4.26387 4.40647 4.47811 4.50923 4.60030 4.64074 4.72278 4.82992 4.83851 4.88651 4.93482 5.04669 5.11973 5.17609 5.18886 5.35125 5.44539 5.51063 6.00176 6.38455 6.53554 6.90950 7.26282 7.84384 8.61747 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038396 B = 0.007059 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.062940 B = 3965.426132 C = 4071.258759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.481 5.481 3 C -0.343 4.343 4 H 0.038 0.962 5 C 0.013 3.987 6 N -0.908 5.908 7 Si 0.951 3.049 8 H -0.231 1.231 9 H -0.287 1.287 10 H -0.262 1.262 11 C 0.458 3.542 12 O -0.620 6.620 13 C -0.096 4.096 14 H 0.113 0.887 15 C -0.155 4.155 16 C 0.064 3.936 17 O -0.389 6.389 18 C 0.112 3.888 19 C -0.177 4.177 20 C -0.136 4.136 21 C -0.115 4.115 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.281 0.719 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 -17.222 -1.965 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.202 5.202 3 C -0.471 4.471 4 H 0.056 0.944 5 C -0.190 4.190 6 N -0.545 5.545 7 Si 0.773 3.227 8 H -0.155 1.155 9 H -0.214 1.214 10 H -0.186 1.186 11 C 0.249 3.751 12 O -0.505 6.505 13 C -0.117 4.117 14 H 0.130 0.870 15 C -0.193 4.193 16 C -0.013 4.013 17 O -0.309 6.309 18 C 0.073 3.927 19 C -0.234 4.234 20 C -0.193 4.193 21 C -0.153 4.153 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.461 -17.125 -1.830 20.151 hybrid contribution 0.488 1.150 -0.495 1.343 sum -9.973 -15.975 -2.325 18.976 Atomic orbital electron populations 1.22444 0.80189 1.02948 1.03201 1.43783 1.06052 1.04424 1.65985 1.18621 1.10532 0.88506 1.29423 0.94443 1.26209 0.99341 0.93738 0.99678 1.69897 1.46202 0.99376 1.39004 0.85827 0.79778 0.78684 0.78363 1.15548 1.21380 1.18629 1.21396 0.87899 0.86410 0.79429 1.90503 1.16809 1.88064 1.55114 1.21333 0.97873 0.90993 1.01472 0.86965 1.22461 0.99797 1.01163 0.95845 1.22736 0.90070 0.84247 1.04204 1.87926 1.49028 1.51875 1.42084 1.21578 0.91030 0.93885 0.86221 1.22444 1.00512 1.03338 0.97116 1.21761 0.98021 0.96765 1.02736 1.21933 0.97375 0.93758 1.02259 0.90384 0.92378 0.88458 0.90913 0.93128 0.87935 0.90431 0.86700 0.90832 0.90271 0.91465 0.92942 0.90378 0.90092 0.91554 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.93 7.54 127.77 0.96 2.89 16 2 N -0.48 -23.59 2.55 -658.89 -1.68 -25.27 16 3 C -0.34 -20.66 9.32 84.04 0.78 -19.88 16 4 H 0.04 2.67 7.93 -2.91 -0.02 2.65 16 5 C 0.01 0.73 5.25 84.93 0.45 1.18 16 6 N -0.91 -54.42 13.96 21.66 0.30 -54.12 16 7 Si 0.95 41.49 25.30 68.60 1.74 43.22 16 8 H -0.23 -8.51 6.55 99.48 0.65 -7.86 16 9 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 11 C 0.46 21.96 7.04 87.66 0.62 22.58 16 12 O -0.62 -36.16 15.85 -3.04 -0.05 -36.21 16 13 C -0.10 -3.18 1.49 -11.42 -0.02 -3.20 16 14 H 0.11 3.14 5.88 -2.39 -0.01 3.13 16 15 C -0.15 -4.24 5.05 30.69 0.16 -4.09 16 16 C 0.06 1.32 6.52 72.01 0.47 1.79 16 17 O -0.39 -9.86 10.24 -148.98 -1.53 -11.39 16 18 C 0.11 2.70 1.11 -10.76 -0.01 2.69 16 19 C -0.18 -3.30 7.93 71.98 0.57 -2.73 16 20 C -0.14 -2.82 8.85 71.98 0.64 -2.18 16 21 C -0.11 -3.71 3.52 30.68 0.11 -3.60 16 22 H 0.08 2.42 6.83 -2.39 -0.02 2.40 16 23 H 0.06 2.18 3.59 -2.38 -0.01 2.17 16 24 H 0.10 2.63 6.21 -2.39 -0.01 2.61 16 25 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.10 2.47 4.62 -2.39 -0.01 2.46 16 28 H 0.08 1.26 6.34 -2.39 -0.02 1.24 16 29 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.19 4.97 -2.38 -0.01 1.18 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 Total: -1.00 -76.70 280.12 4.51 -72.19 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.01 Total: 16.12 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 4.72 Total: -4.55 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.38 Total: -79.39 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -1.57 Total: -47.60 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.74 Total: 43.22 kcal Total: -76.70 4.51 -72.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182025595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.201 kcal (2) G-P(sol) polarization free energy of solvation -76.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds