Wall clock time and date at job start Thu Apr 9 2020 12:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46935 * 2 1 4 4 C 1.52999 * 109.47127 * 239.99748 * 2 1 3 5 5 C 1.53005 * 109.47394 * 119.99801 * 2 1 3 6 6 O 1.45208 * 109.46751 * 60.00012 * 5 2 1 7 7 C 1.34634 * 116.99817 * 179.97438 * 6 5 2 8 8 O 1.21513 * 119.99817 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99987 * 180.02562 * 7 6 5 10 10 C 1.47582 * 134.48994 * 180.02562 * 9 7 6 11 11 C 1.53950 * 86.11527 * 155.35548 * 10 9 7 12 12 C 1.50698 * 113.74185 * 269.15304 * 11 10 9 13 13 H 1.08004 * 119.99782 * 358.07289 * 12 11 10 14 14 C 1.37878 * 120.00154 * 178.07233 * 12 11 10 15 15 N 1.31517 * 119.99673 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00171 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47199 * 90.00222 * 16 14 12 18 18 H 1.48497 * 109.47283 * 210.00257 * 16 14 12 19 19 H 1.48499 * 109.47112 * 330.00381 * 16 14 12 20 20 C 1.47805 * 134.45584 * 359.86511 * 9 7 6 21 21 H 1.09002 * 109.47267 * 299.99336 * 1 2 3 22 22 H 1.08988 * 109.47533 * 60.00236 * 1 2 3 23 23 H 1.09007 * 109.46729 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47258 * 299.99898 * 3 2 1 26 26 H 1.09002 * 109.47334 * 60.00380 * 3 2 1 27 27 H 1.08998 * 109.47395 * 300.00235 * 4 2 1 28 28 H 1.09002 * 109.46929 * 60.00186 * 4 2 1 29 29 H 1.08999 * 109.47462 * 179.97438 * 4 2 1 30 30 H 1.08991 * 109.47232 * 300.00398 * 5 2 1 31 31 H 1.08990 * 109.47097 * 179.97438 * 5 2 1 32 32 H 1.08999 * 113.77186 * 41.05506 * 10 9 7 33 33 H 1.09004 * 113.76624 * 269.64983 * 10 9 7 34 34 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 35 35 H 0.96999 * 119.99516 * 179.97438 * 15 14 12 36 36 H 1.08999 * 113.77157 * 90.38364 * 20 9 7 37 37 H 1.09002 * 113.84143 * 318.91627 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7212 1.2493 6 8 1.5560 -2.0903 1.2493 7 6 1.9183 -2.8666 2.2879 8 8 2.6193 -2.4124 3.1704 9 7 1.5033 -4.1475 2.3487 10 6 1.6988 -5.2535 3.3060 11 6 0.3778 -5.8227 2.7572 12 6 -0.8422 -5.3587 3.5105 13 1 -0.7333 -4.7128 4.3693 14 6 -2.0973 -5.7585 3.1033 15 7 -2.2298 -6.5453 2.0578 16 14 -3.6095 -5.1838 4.0373 17 1 -4.0978 -3.9092 3.4526 18 1 -4.6742 -6.2142 3.9375 19 1 -3.2586 -4.9713 5.4646 20 6 0.6673 -5.0069 1.4844 21 1 -0.3634 0.5137 0.8901 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7209 -1.2495 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7216 1.2490 32 1 1.6443 -4.9457 4.3502 33 1 2.5682 -5.8740 3.0888 34 1 0.3959 -6.9013 2.6010 35 1 -3.1128 -6.8269 1.7715 36 1 1.2330 -5.5547 0.7307 37 1 -0.2090 -4.5026 1.0771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194353439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:42 Heat of formation + Delta-G solvation = -66.256391 kcal Electronic energy + Delta-G solvation = -17877.898995 eV Core-core repulsion = 15042.085982 eV Total energy + Delta-G solvation = -2835.813013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -39.86797 -38.24071 -36.85352 -34.95281 -32.57481 -29.20019 -27.32609 -27.19645 -26.46956 -25.14169 -24.97649 -20.93503 -19.08785 -18.95788 -17.22265 -16.38922 -16.29235 -15.97257 -14.71473 -14.57740 -14.50830 -13.98057 -13.80535 -13.11678 -12.71792 -12.45706 -12.28429 -12.10066 -11.86455 -11.77782 -11.63406 -11.09304 -10.88490 -10.86953 -10.83900 -10.76323 -10.56459 -10.29218 -10.09750 -9.69334 -9.52078 -9.22341 -8.57673 -7.82826 -6.16457 -4.19769 2.70560 3.26298 3.33160 3.37351 3.56838 4.35049 4.43111 4.75512 4.75950 5.02039 5.14381 5.39340 5.46000 5.54638 5.63333 5.75410 5.77973 5.85559 5.95350 6.01660 6.03693 6.11320 6.12645 6.21728 6.35832 6.42111 6.44093 6.47499 6.58438 6.95699 7.04928 7.44949 7.80253 8.24000 8.58612 8.83086 9.00223 9.45897 10.93664 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.006482 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.687681 B = 4318.403396 C = 4822.713524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.098 3.902 6 O -0.363 6.363 7 C 0.662 3.338 8 O -0.601 6.601 9 N -0.611 5.611 10 C 0.121 3.879 11 C 0.035 3.965 12 C -0.504 4.504 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.106 3.894 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 9.298 -5.965 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.196 4.196 4 C -0.197 4.197 5 C 0.022 3.978 6 O -0.277 6.277 7 C 0.418 3.582 8 O -0.493 6.493 9 N -0.351 5.351 10 C 0.000 4.000 11 C 0.016 3.984 12 C -0.542 4.542 13 H 0.078 0.922 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.017 4.017 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.008 9.599 -5.854 12.748 hybrid contribution -0.733 0.490 0.411 0.973 sum 5.275 10.089 -5.443 12.619 Atomic orbital electron populations 1.21843 0.93556 1.03117 1.01343 1.20648 0.96974 0.94824 0.94451 1.21816 1.01097 0.94463 1.02271 1.21830 1.00569 1.01242 0.96029 1.22889 0.98437 0.78401 0.98026 1.86238 1.71957 1.24169 1.45376 1.17716 0.78320 0.81747 0.80449 1.90893 1.43344 1.74027 1.41072 1.48882 1.51924 1.05779 1.28544 1.23580 0.99596 0.83032 0.93745 1.20459 0.90741 0.96309 0.90884 1.20779 0.89755 1.30312 1.13337 0.92185 1.24969 0.99098 0.94518 0.95008 1.69942 1.23709 1.34022 1.24775 0.86540 0.82339 0.78446 0.80430 1.20613 1.21055 1.19729 1.23661 0.91741 0.89979 0.96274 0.92752 0.92711 0.91315 0.92431 0.91816 0.92331 0.91524 0.92678 0.92919 0.91688 0.91857 0.90937 0.91595 0.92156 0.92680 0.92417 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.33 37.16 0.31 -1.51 16 2 C -0.07 -0.86 0.86 -154.51 -0.13 -0.99 16 3 C -0.14 -1.36 8.47 37.16 0.31 -1.04 16 4 C -0.14 -1.65 8.33 37.16 0.31 -1.34 16 5 C 0.10 1.54 4.33 37.16 0.16 1.70 16 6 O -0.36 -7.13 8.87 -40.31 -0.36 -7.49 16 7 C 0.66 14.90 8.92 54.05 0.48 15.39 16 8 O -0.60 -14.65 16.86 -19.28 -0.33 -14.98 16 9 N -0.61 -13.63 3.53 -184.05 -0.65 -14.28 16 10 C 0.12 2.53 8.40 -2.96 -0.02 2.51 16 11 C 0.04 0.82 3.67 -90.85 -0.33 0.49 16 12 C -0.50 -13.33 8.68 -34.44 -0.30 -13.62 16 13 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 16 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 C 0.11 2.33 8.45 -2.85 -0.02 2.30 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.60 8.14 -51.94 -0.42 0.17 16 23 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.87 8.09 -51.93 -0.42 1.45 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -29.63 312.64 -6.49 -36.13 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.25 Total: -2.01 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 0.67 Total: 5.57 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.09 Total: -37.75 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.68 Total: -22.47 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.63 -6.49 -36.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194353439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.131 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds