Wall clock time and date at job start Thu Apr 9 2020 12:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46935 * 2 1 4 4 C 1.52999 * 109.47127 * 239.99748 * 2 1 3 5 5 C 1.53005 * 109.47394 * 119.99801 * 2 1 3 6 6 O 1.45208 * 109.46751 * 60.00012 * 5 2 1 7 7 C 1.34634 * 116.99817 * 179.97438 * 6 5 2 8 8 O 1.21513 * 119.99817 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99987 * 180.02562 * 7 6 5 10 10 C 1.47582 * 134.48994 * 180.02562 * 9 7 6 11 11 C 1.53950 * 86.11527 * 155.35548 * 10 9 7 12 12 C 1.50698 * 113.74185 * 269.15304 * 11 10 9 13 13 H 1.08004 * 119.99782 * 358.07289 * 12 11 10 14 14 C 1.37878 * 120.00154 * 178.07233 * 12 11 10 15 15 N 1.31517 * 119.99673 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00171 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47199 * 90.00222 * 16 14 12 18 18 H 1.48497 * 109.47283 * 210.00257 * 16 14 12 19 19 H 1.48499 * 109.47112 * 330.00381 * 16 14 12 20 20 C 1.47805 * 134.45584 * 359.86511 * 9 7 6 21 21 H 1.09002 * 109.47267 * 299.99336 * 1 2 3 22 22 H 1.08988 * 109.47533 * 60.00236 * 1 2 3 23 23 H 1.09007 * 109.46729 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47258 * 299.99898 * 3 2 1 26 26 H 1.09002 * 109.47334 * 60.00380 * 3 2 1 27 27 H 1.08998 * 109.47395 * 300.00235 * 4 2 1 28 28 H 1.09002 * 109.46929 * 60.00186 * 4 2 1 29 29 H 1.08999 * 109.47462 * 179.97438 * 4 2 1 30 30 H 1.08991 * 109.47232 * 300.00398 * 5 2 1 31 31 H 1.08990 * 109.47097 * 179.97438 * 5 2 1 32 32 H 1.08999 * 113.77186 * 41.05506 * 10 9 7 33 33 H 1.09004 * 113.76624 * 269.64983 * 10 9 7 34 34 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 35 35 H 0.96999 * 119.99516 * 179.97438 * 15 14 12 36 36 H 1.08999 * 113.77157 * 90.38364 * 20 9 7 37 37 H 1.09002 * 113.84143 * 318.91627 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7212 1.2493 6 8 1.5560 -2.0903 1.2493 7 6 1.9183 -2.8666 2.2879 8 8 2.6193 -2.4124 3.1704 9 7 1.5033 -4.1475 2.3487 10 6 1.6988 -5.2535 3.3060 11 6 0.3778 -5.8227 2.7572 12 6 -0.8422 -5.3587 3.5105 13 1 -0.7333 -4.7128 4.3693 14 6 -2.0973 -5.7585 3.1033 15 7 -2.2298 -6.5453 2.0578 16 14 -3.6095 -5.1838 4.0373 17 1 -4.0978 -3.9092 3.4526 18 1 -4.6742 -6.2142 3.9375 19 1 -3.2586 -4.9713 5.4646 20 6 0.6673 -5.0069 1.4844 21 1 -0.3634 0.5137 0.8901 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7209 -1.2495 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7216 1.2490 32 1 1.6443 -4.9457 4.3502 33 1 2.5682 -5.8740 3.0888 34 1 0.3959 -6.9013 2.6010 35 1 -3.1128 -6.8269 1.7715 36 1 1.2330 -5.5547 0.7307 37 1 -0.2090 -4.5026 1.0771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194353439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:41 Heat of formation + Delta-G solvation = -83.185238 kcal Electronic energy + Delta-G solvation = -17878.633085 eV Core-core repulsion = 15042.085982 eV Total energy + Delta-G solvation = -2836.547103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.52941 -39.82283 -38.24153 -36.47643 -34.59474 -30.98942 -28.20092 -28.17861 -27.93549 -26.93134 -26.72042 -22.69768 -20.79878 -20.07324 -18.95666 -18.31690 -17.90656 -17.59864 -16.53236 -16.07091 -15.82866 -15.18594 -15.16145 -14.50307 -14.32576 -13.94836 -13.76083 -13.60851 -13.06481 -12.96519 -12.90922 -12.67810 -12.62858 -12.57583 -12.18719 -11.94544 -11.89135 -11.67709 -11.49004 -11.46893 -11.40658 -11.13245 -10.59600 -9.59230 -8.20190 -6.28429 1.12899 1.40020 1.42674 1.51713 1.80710 2.40737 2.91415 3.10828 3.67620 3.72438 3.96117 4.18643 4.30313 4.40108 4.41472 4.46979 4.53478 4.67693 4.69505 4.77460 4.78847 4.87593 4.89268 4.99451 5.01665 5.10166 5.13345 5.21072 5.38934 5.40413 5.47625 5.52852 5.76152 6.27369 6.77040 6.83105 7.26911 7.39649 8.89476 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.006482 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.687681 B = 4318.403396 C = 4822.713524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.134 4.134 4 C -0.137 4.137 5 C 0.089 3.911 6 O -0.366 6.366 7 C 0.657 3.343 8 O -0.625 6.625 9 N -0.619 5.619 10 C 0.129 3.871 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.044 0.956 14 C 0.027 3.973 15 N -0.910 5.910 16 Si 0.948 3.052 17 H -0.281 1.281 18 H -0.276 1.276 19 H -0.272 1.272 20 C 0.118 3.882 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.266 0.734 36 H 0.087 0.913 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 10.277 -6.760 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.191 4.191 4 C -0.194 4.194 5 C 0.015 3.985 6 O -0.280 6.280 7 C 0.413 3.587 8 O -0.519 6.519 9 N -0.359 5.359 10 C 0.009 3.991 11 C 0.005 3.995 12 C -0.559 4.559 13 H 0.063 0.937 14 C -0.174 4.174 15 N -0.548 5.548 16 Si 0.774 3.226 17 H -0.207 1.207 18 H -0.201 1.201 19 H -0.196 1.196 20 C -0.004 4.004 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.356 10.579 -6.657 14.023 hybrid contribution -0.827 0.209 0.647 1.071 sum 5.530 10.788 -6.010 13.531 Atomic orbital electron populations 1.21840 0.94008 1.01455 1.02489 1.20730 0.96593 0.96235 0.92959 1.21804 1.01696 0.92205 1.03417 1.21816 1.01090 0.99969 0.96572 1.23298 0.98902 0.76609 0.99709 1.86268 1.71836 1.25743 1.44132 1.17859 0.78140 0.81932 0.80721 1.90863 1.44488 1.74488 1.42072 1.48984 1.51906 1.06148 1.28869 1.23598 0.99653 0.82722 0.93127 1.20409 0.91126 0.96105 0.91849 1.20995 0.91376 1.30195 1.13304 0.93725 1.25579 1.01364 0.94697 0.95770 1.70003 1.24338 1.34762 1.25659 0.85712 0.79631 0.78029 0.79249 1.20739 1.20107 1.19649 1.23515 0.91340 0.89378 0.96166 0.92913 0.90296 0.94316 0.91528 0.89768 0.92116 0.93940 0.90454 0.92099 0.92443 0.91396 0.91794 0.87840 0.92562 0.92488 0.89479 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.33 71.98 0.60 -2.87 16 2 C -0.06 -1.52 0.86 -52.18 -0.04 -1.56 16 3 C -0.13 -2.24 8.47 71.98 0.61 -1.63 16 4 C -0.14 -3.00 8.33 71.98 0.60 -2.40 16 5 C 0.09 2.77 4.33 71.98 0.31 3.08 16 6 O -0.37 -14.43 8.87 -55.43 -0.49 -14.92 16 7 C 0.66 29.60 8.92 129.79 1.16 30.76 16 8 O -0.62 -30.46 16.86 19.80 0.33 -30.12 16 9 N -0.62 -27.36 3.53 -966.61 -3.41 -30.78 16 10 C 0.13 5.28 8.40 86.49 0.73 6.00 16 11 C 0.02 1.13 3.67 -10.88 -0.04 1.09 16 12 C -0.52 -27.79 8.68 25.60 0.22 -27.57 16 13 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 14 C 0.03 1.42 5.46 84.65 0.46 1.88 16 15 N -0.91 -49.66 13.29 21.45 0.28 -49.37 16 16 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 C 0.12 5.16 8.45 86.44 0.73 5.89 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.04 1.17 7.68 -2.38 -0.02 1.15 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.04 1.13 7.68 -2.39 -0.02 1.11 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.71 8.09 -2.39 -0.02 2.69 16 33 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.27 13.82 8.31 -92.71 -0.77 13.04 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.05 2.58 8.09 -2.39 -0.02 2.56 16 Total: -1.00 -62.95 312.64 5.09 -57.86 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.02 Total: 9.85 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 5.33 Total: 12.66 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -3.13 Total: -80.15 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.16 Total: -45.04 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -62.95 5.09 -57.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194353439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.325 kcal (2) G-P(sol) polarization free energy of solvation -62.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds