Wall clock time and date at job start Thu Apr 9 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99743 * 2 1 4 4 H 1.48499 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47393 * 300.00319 * 3 2 1 6 6 H 1.48500 * 109.47377 * 59.99963 * 3 2 1 7 7 C 1.37880 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99565 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99818 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.47960 * 110.99919 * 189.99952 * 10 9 7 12 12 C 1.53932 * 86.18302 * 222.41907 * 11 10 9 13 13 O 1.42898 * 113.73501 * 138.07801 * 12 11 10 14 14 C 1.42906 * 113.99824 * 151.90326 * 13 12 11 15 15 C 1.53006 * 109.46752 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.86846 * 54.29687 * 15 14 13 17 17 C 1.54101 * 109.87562 * 175.30369 * 15 14 13 18 18 C 1.54814 * 104.18845 * 121.45290 * 17 15 14 19 19 C 1.55000 * 102.08940 * 20.88085 * 18 17 15 20 20 O 1.43741 * 109.87614 * 293.28836 * 15 14 13 21 21 C 1.48195 * 111.06923 * 90.56899 * 10 9 7 22 22 H 0.96995 * 120.00180 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46973 * 60.00084 * 9 7 2 24 24 H 1.08997 * 109.47433 * 299.99974 * 9 7 2 25 25 H 1.08999 * 113.75474 * 108.10545 * 11 10 9 26 26 H 1.09004 * 113.76186 * 336.73809 * 11 10 9 27 27 H 1.09001 * 113.73693 * 269.26255 * 12 11 10 28 28 H 1.08993 * 109.47732 * 60.00254 * 14 13 12 29 29 H 1.09000 * 109.47141 * 299.99893 * 14 13 12 30 30 H 1.08996 * 110.48990 * 240.13036 * 17 15 14 31 31 H 1.08998 * 110.48736 * 2.64668 * 17 15 14 32 32 H 1.08997 * 110.90729 * 139.07721 * 18 17 15 33 33 H 1.08997 * 110.90962 * 262.68204 * 18 17 15 34 34 H 1.08993 * 110.61796 * 81.47669 * 19 18 17 35 35 H 1.08996 * 110.61420 * 204.31925 * 19 18 17 36 36 H 1.09001 * 113.75678 * 23.23807 * 21 10 9 37 37 H 1.09007 * 113.82182 * 251.80871 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5162 -4.9026 -0.2417 12 6 2.4201 -5.4754 0.8648 13 8 1.7409 -6.3520 1.7661 14 6 2.5827 -7.3442 2.3569 15 6 1.7541 -8.2214 3.2976 16 1 0.8975 -8.6319 2.7629 17 6 2.6253 -9.3665 3.8493 18 6 2.5713 -9.1783 5.3851 19 6 1.2868 -8.3294 5.5631 20 8 1.3033 -7.4446 4.4198 21 6 2.5426 -4.0301 1.3806 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5572 0.8896 25 1 1.7073 -5.3260 -1.2277 26 1 0.4578 -4.8891 0.0189 27 1 3.3578 -5.8899 0.4947 28 1 3.3783 -6.8571 2.9205 29 1 3.0192 -7.9637 1.5734 30 1 2.2074 -10.3332 3.5685 31 1 3.6494 -9.2751 3.4876 32 1 2.4762 -10.1388 5.8915 33 1 3.4477 -8.6372 5.7417 34 1 0.4011 -8.9643 5.5418 35 1 1.3280 -7.7612 6.4924 36 1 1.7851 -3.7608 2.1167 37 1 3.5522 -3.7576 1.6882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205993269.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:48 Heat of formation + Delta-G solvation = -57.823189 kcal Electronic energy + Delta-G solvation = -17228.849842 eV Core-core repulsion = 14393.402520 eV Total energy + Delta-G solvation = -2835.447322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73178 -39.08065 -36.29633 -32.78871 -32.36558 -30.72486 -28.86037 -25.61722 -25.47364 -24.60039 -22.26639 -21.49398 -21.10624 -19.23039 -17.20153 -16.37955 -16.32841 -15.88841 -15.80667 -15.01665 -14.47572 -14.29963 -13.86165 -13.72997 -13.18594 -12.80580 -12.14416 -12.01846 -11.95572 -11.92611 -11.51875 -11.32667 -11.15271 -11.07097 -10.89043 -10.78309 -10.46235 -10.16700 -9.77604 -9.62066 -9.14611 -9.10013 -8.38682 -7.76417 -5.97802 -3.98968 3.34799 3.41502 3.47335 3.63899 3.80182 4.28754 4.47399 4.57632 4.67725 4.89282 4.93543 5.03859 5.05286 5.18763 5.31620 5.35993 5.37469 5.40900 5.45908 5.52260 5.64510 5.75841 5.83494 5.99112 6.17994 6.23993 6.42955 6.53217 6.69977 6.78682 7.29301 7.53671 7.72772 7.92410 8.16461 8.51448 9.08626 9.64742 11.13399 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042553 B = 0.004045 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.843442 B = 6921.100872 C = 7159.103000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.162 3.838 10 N -0.474 5.474 11 C 0.002 3.998 12 C 0.053 3.947 13 O -0.370 6.370 14 C 0.063 3.937 15 C 0.078 3.922 16 H 0.075 0.925 17 C -0.150 4.150 18 C -0.155 4.155 19 C 0.042 3.958 20 O -0.360 6.360 21 C 0.000 4.000 22 H 0.260 0.740 23 H 0.029 0.971 24 H 0.004 0.996 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 -20.135 8.605 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.148 4.148 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.036 3.964 10 N -0.199 5.199 11 C -0.127 4.127 12 C -0.006 4.006 13 O -0.288 6.288 14 C -0.014 4.014 15 C 0.020 3.980 16 H 0.093 0.907 17 C -0.187 4.187 18 C -0.193 4.193 19 C -0.035 4.035 20 O -0.279 6.279 21 C -0.129 4.129 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.022 0.978 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.161 -19.534 8.184 21.798 hybrid contribution -0.044 0.561 0.478 0.738 sum 5.117 -18.973 8.662 21.475 Atomic orbital electron populations 1.69972 1.06069 1.26642 1.51279 1.25016 0.94894 0.99384 0.95514 0.86419 0.80076 0.83332 0.77468 1.19658 1.21021 1.21090 1.21153 0.93597 0.89804 1.49652 0.91853 1.20234 0.90637 0.88839 0.96723 1.68576 1.33269 1.01792 1.16228 1.24126 0.97975 0.92951 0.97619 1.24389 0.96037 0.89386 0.90737 1.88033 1.35483 1.44693 1.60613 1.22693 0.93243 0.90590 0.94847 1.22772 0.96510 0.90522 0.88217 0.90689 1.22935 1.01290 0.98729 0.95794 1.23132 0.99386 1.00979 0.95782 1.23599 0.96570 0.92675 0.90676 1.89097 1.87584 1.33778 1.17395 1.24362 1.02080 0.92803 0.93701 0.92995 0.95284 0.97793 0.90013 0.91175 0.89524 0.92706 0.92384 0.90263 0.90162 0.90212 0.90371 0.92258 0.88956 0.90842 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.50 -14.92 9.36 -34.44 -0.32 -15.24 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.16 4.47 4.55 -4.98 -0.02 4.45 16 10 N -0.47 -10.97 6.14 -239.74 -1.47 -12.45 16 11 C 0.00 0.05 7.78 -2.76 -0.02 0.03 16 12 C 0.05 0.91 4.48 -25.80 -0.12 0.79 16 13 O -0.37 -6.28 10.35 -37.24 -0.39 -6.66 16 14 C 0.06 0.81 5.24 37.16 0.19 1.00 16 15 C 0.08 0.90 3.70 -26.15 -0.10 0.80 16 16 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 17 C -0.15 -1.17 6.64 -25.20 -0.17 -1.34 16 18 C -0.16 -1.14 7.16 -24.72 -0.18 -1.32 16 19 C 0.04 0.39 7.72 38.21 0.29 0.69 16 20 O -0.36 -5.03 11.19 -37.24 -0.42 -5.45 16 21 C 0.00 0.00 7.81 -2.63 -0.02 -0.02 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 24 H 0.00 0.12 7.39 -51.93 -0.38 -0.26 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.07 1.42 7.92 -51.93 -0.41 1.01 16 27 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.64 7.49 -51.93 -0.39 1.25 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -33.25 305.74 -8.69 -41.94 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.19 Total: -3.66 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.55 Total: -8.71 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.74 Total: -39.40 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.80 Total: -12.11 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.25 -8.69 -41.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205993269.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.887 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds