Wall clock time and date at job start Thu Apr 9 2020 12:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99743 * 2 1 4 4 H 1.48499 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47393 * 300.00319 * 3 2 1 6 6 H 1.48500 * 109.47377 * 59.99963 * 3 2 1 7 7 C 1.37880 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99565 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99818 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.47960 * 110.99919 * 189.99952 * 10 9 7 12 12 C 1.53932 * 86.18302 * 222.41907 * 11 10 9 13 13 O 1.42898 * 113.73501 * 138.07801 * 12 11 10 14 14 C 1.42906 * 113.99824 * 151.90326 * 13 12 11 15 15 C 1.53006 * 109.46752 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.86846 * 54.29687 * 15 14 13 17 17 C 1.54101 * 109.87562 * 175.30369 * 15 14 13 18 18 C 1.54814 * 104.18845 * 121.45290 * 17 15 14 19 19 C 1.55000 * 102.08940 * 20.88085 * 18 17 15 20 20 O 1.43741 * 109.87614 * 293.28836 * 15 14 13 21 21 C 1.48195 * 111.06923 * 90.56899 * 10 9 7 22 22 H 0.96995 * 120.00180 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46973 * 60.00084 * 9 7 2 24 24 H 1.08997 * 109.47433 * 299.99974 * 9 7 2 25 25 H 1.08999 * 113.75474 * 108.10545 * 11 10 9 26 26 H 1.09004 * 113.76186 * 336.73809 * 11 10 9 27 27 H 1.09001 * 113.73693 * 269.26255 * 12 11 10 28 28 H 1.08993 * 109.47732 * 60.00254 * 14 13 12 29 29 H 1.09000 * 109.47141 * 299.99893 * 14 13 12 30 30 H 1.08996 * 110.48990 * 240.13036 * 17 15 14 31 31 H 1.08998 * 110.48736 * 2.64668 * 17 15 14 32 32 H 1.08997 * 110.90729 * 139.07721 * 18 17 15 33 33 H 1.08997 * 110.90962 * 262.68204 * 18 17 15 34 34 H 1.08993 * 110.61796 * 81.47669 * 19 18 17 35 35 H 1.08996 * 110.61420 * 204.31925 * 19 18 17 36 36 H 1.09001 * 113.75678 * 23.23807 * 21 10 9 37 37 H 1.09007 * 113.82182 * 251.80871 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5162 -4.9026 -0.2417 12 6 2.4201 -5.4754 0.8648 13 8 1.7409 -6.3520 1.7661 14 6 2.5827 -7.3442 2.3569 15 6 1.7541 -8.2214 3.2976 16 1 0.8975 -8.6319 2.7629 17 6 2.6253 -9.3665 3.8493 18 6 2.5713 -9.1783 5.3851 19 6 1.2868 -8.3294 5.5631 20 8 1.3033 -7.4446 4.4198 21 6 2.5426 -4.0301 1.3806 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5572 0.8896 25 1 1.7073 -5.3260 -1.2277 26 1 0.4578 -4.8891 0.0189 27 1 3.3578 -5.8899 0.4947 28 1 3.3783 -6.8571 2.9205 29 1 3.0192 -7.9637 1.5734 30 1 2.2074 -10.3332 3.5685 31 1 3.6494 -9.2751 3.4876 32 1 2.4762 -10.1388 5.8915 33 1 3.4477 -8.6372 5.7417 34 1 0.4011 -8.9643 5.5418 35 1 1.3280 -7.7612 6.4924 36 1 1.7851 -3.7608 2.1167 37 1 3.5522 -3.7576 1.6882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205993269.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:47 Heat of formation + Delta-G solvation = -83.182530 kcal Electronic energy + Delta-G solvation = -17229.949505 eV Core-core repulsion = 14393.402520 eV Total energy + Delta-G solvation = -2836.546985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95413 -40.27966 -37.66569 -35.00267 -33.13857 -31.77173 -30.68906 -27.23973 -26.97617 -26.00268 -23.42288 -22.96199 -21.97561 -20.80076 -18.70130 -18.17908 -17.25207 -17.23425 -16.79364 -16.47593 -16.20670 -15.81181 -15.11823 -14.73282 -14.49999 -14.23469 -14.01741 -13.73910 -13.28933 -12.95489 -12.74253 -12.59952 -12.52235 -12.34774 -12.23999 -12.13072 -11.94940 -11.60873 -11.51147 -11.17318 -10.65750 -10.64145 -10.45523 -9.67795 -8.24560 -6.36130 1.38936 1.40207 1.54588 2.37662 2.56529 2.96250 3.07239 3.26478 3.51762 3.63519 3.83727 3.97655 4.01293 4.17142 4.25862 4.37460 4.47580 4.50232 4.52873 4.62947 4.67945 4.70491 4.81693 4.84734 4.91793 4.95510 4.98079 5.05690 5.10533 5.21077 5.54341 5.73799 5.98672 6.03728 6.31025 6.38149 6.78280 7.33633 8.87368 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042553 B = 0.004045 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.843442 B = 6921.100872 C = 7159.103000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.177 3.823 10 N -0.485 5.485 11 C -0.002 4.002 12 C 0.082 3.918 13 O -0.394 6.394 14 C 0.055 3.945 15 C 0.070 3.930 16 H 0.068 0.932 17 C -0.142 4.142 18 C -0.148 4.148 19 C 0.031 3.969 20 O -0.404 6.404 21 C -0.009 4.009 22 H 0.266 0.734 23 H 0.003 0.997 24 H -0.029 1.029 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.123 0.877 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.059 -21.420 8.798 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.050 3.950 10 N -0.209 5.209 11 C -0.131 4.131 12 C 0.024 3.976 13 O -0.312 6.312 14 C -0.021 4.021 15 C 0.012 3.988 16 H 0.086 0.914 17 C -0.179 4.179 18 C -0.186 4.186 19 C -0.045 4.045 20 O -0.324 6.324 21 C -0.138 4.138 22 H 0.075 0.925 23 H 0.021 0.979 24 H -0.011 1.011 25 H 0.127 0.873 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.159 -20.852 8.385 23.587 hybrid contribution -0.719 0.880 0.471 1.230 sum 6.440 -19.971 8.856 22.776 Atomic orbital electron populations 1.70101 1.07881 1.28051 1.51620 1.26029 0.95859 1.03579 0.94530 0.85225 0.78858 0.77944 0.77916 1.18641 1.19977 1.20218 1.21461 0.93664 0.91063 1.50376 0.92008 1.19887 0.90668 0.90593 0.93848 1.68479 1.32362 1.02052 1.18055 1.24215 0.97354 0.91407 1.00150 1.24071 0.96472 0.87876 0.89171 1.88014 1.36987 1.45535 1.60675 1.23049 0.93062 0.90160 0.95876 1.22946 0.96968 0.91200 0.87672 0.91355 1.22939 1.01317 0.97922 0.95727 1.23130 0.97997 1.01684 0.95782 1.23840 0.98303 0.92793 0.89588 1.89050 1.88068 1.36106 1.19213 1.24403 1.01714 0.95839 0.91857 0.92527 0.97912 1.01089 0.87316 0.92933 0.85903 0.92652 0.89203 0.88297 0.88836 0.87728 0.90418 0.91392 0.88628 0.93639 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.90 13.29 21.45 0.28 -58.61 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.98 46.01 29.54 68.60 2.03 48.03 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.53 -31.96 9.36 25.60 0.24 -31.72 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.18 10.23 4.55 85.56 0.39 10.62 16 10 N -0.49 -22.83 6.14 -915.61 -5.62 -28.45 16 11 C 0.00 -0.09 7.78 86.41 0.67 0.58 16 12 C 0.08 2.73 4.48 31.24 0.14 2.87 16 13 O -0.39 -13.05 10.35 -147.06 -1.52 -14.57 16 14 C 0.05 1.28 5.24 71.98 0.38 1.66 16 15 C 0.07 1.52 3.70 30.97 0.11 1.63 16 16 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 17 C -0.14 -1.80 6.64 31.59 0.21 -1.59 16 18 C -0.15 -1.81 7.16 31.90 0.23 -1.58 16 19 C 0.03 0.55 7.72 72.67 0.56 1.11 16 20 O -0.40 -11.29 11.19 -147.06 -1.65 -12.94 16 21 C -0.01 -0.37 7.81 86.37 0.67 0.31 16 22 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 23 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 24 H -0.03 -1.80 7.39 -2.39 -0.02 -1.82 16 25 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 26 H 0.05 2.21 7.92 -2.39 -0.02 2.19 16 27 H 0.12 3.23 7.89 -2.39 -0.02 3.21 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.96 7.70 -2.39 -0.02 0.94 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 2.13 7.49 -2.39 -0.02 2.12 16 37 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 Total: -1.00 -74.04 305.74 -1.39 -75.43 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.02 Total: 6.89 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.07 Total: -15.78 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -5.34 Total: -87.06 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -3.17 Total: -27.51 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -74.04 -1.39 -75.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205993269.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.751 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds