Wall clock time and date at job start Thu Apr 9 2020 12:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.47480 * 111.00171 * 265.96874 * 10 9 7 12 12 C 1.53513 * 87.93170 * 221.29782 * 11 10 9 13 13 O 1.42904 * 114.16855 * 139.67012 * 12 11 10 14 14 C 1.42902 * 113.99828 * 116.15948 * 13 12 11 15 15 C 1.53001 * 109.46969 * 180.02562 * 14 13 12 16 16 H 1.08998 * 110.45888 * 52.39500 * 15 14 13 17 17 C 1.54507 * 110.51066 * 175.00111 * 15 14 13 18 18 C 1.54477 * 104.06579 * 118.64273 * 17 15 14 19 19 O 1.44425 * 104.79996 * 23.97845 * 18 17 15 20 20 C 1.44425 * 105.27631 * 319.48668 * 19 18 17 21 21 C 1.47482 * 110.99764 * 169.99672 * 10 9 7 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.08999 * 113.47664 * 336.06792 * 11 10 9 26 26 H 1.08994 * 113.47488 * 106.52987 * 11 10 9 27 27 H 1.08999 * 114.16922 * 272.37539 * 12 11 10 28 28 H 1.09005 * 109.46901 * 299.99866 * 14 13 12 29 29 H 1.08995 * 109.47308 * 60.00000 * 14 13 12 30 30 H 1.09000 * 110.51116 * 237.28964 * 17 15 14 31 31 H 1.08998 * 110.51176 * 359.97438 * 17 15 14 32 32 H 1.09007 * 110.37490 * 142.80750 * 18 17 15 33 33 H 1.09004 * 110.37336 * 265.14568 * 18 17 15 34 34 H 1.09000 * 110.37298 * 281.68131 * 20 19 18 35 35 H 1.08997 * 110.36955 * 159.34358 * 20 19 18 36 36 H 1.08994 * 113.48196 * 253.46980 * 21 10 9 37 37 H 1.09001 * 113.47462 * 23.88110 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 2.4754 -4.0804 -1.3729 12 6 2.4189 -5.5182 -0.8381 13 8 1.7489 -6.4381 -1.7024 14 6 2.5900 -7.4752 -2.2115 15 6 1.7720 -8.3952 -3.1200 16 1 1.2475 -7.8138 -3.8782 17 6 2.6839 -9.4518 -3.7828 18 6 2.1290 -10.8000 -3.2723 19 8 0.7541 -10.5256 -2.9256 20 6 0.7739 -9.2301 -2.2874 21 6 1.5183 -4.8986 0.2397 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 1.6755 -3.8466 -2.0755 26 1 3.4596 -3.7931 -1.7429 27 1 3.3713 -5.8925 -0.4627 28 1 3.4064 -7.0333 -2.7828 29 1 2.9979 -8.0524 -1.3818 30 1 2.6084 -9.3943 -4.8686 31 1 3.7175 -9.3184 -3.4636 32 1 2.1789 -11.5532 -4.0587 33 1 2.6832 -11.1303 -2.3937 34 1 1.1203 -9.3196 -1.2578 35 1 -0.2171 -8.7772 -2.3172 36 1 1.6913 -5.3047 1.2362 37 1 0.4627 -4.8828 -0.0316 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224475907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:12 Heat of formation + Delta-G solvation = -57.569033 kcal Electronic energy + Delta-G solvation = -17144.374030 eV Core-core repulsion = 14308.937729 eV Total energy + Delta-G solvation = -2835.436301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87439 -39.31874 -36.63892 -33.10601 -32.65832 -29.77287 -28.95743 -25.81947 -25.40075 -24.74890 -22.96564 -21.56152 -20.69843 -19.34554 -17.23845 -16.53490 -16.27492 -15.89628 -15.74268 -15.12761 -14.93403 -14.39339 -14.05140 -13.53325 -13.27122 -12.89033 -12.34793 -12.24018 -12.05015 -11.75716 -11.53303 -11.45113 -11.26807 -10.93084 -10.78142 -10.73695 -10.52610 -10.19793 -10.00883 -9.74817 -9.22874 -9.15487 -8.44113 -7.93131 -6.03511 -4.04961 3.31873 3.37618 3.42460 3.55678 3.82844 4.37056 4.43208 4.52948 4.69319 4.85821 4.88002 4.97867 5.02748 5.16200 5.22983 5.31739 5.37575 5.40152 5.45629 5.57788 5.64964 5.72084 5.86194 5.98284 6.07462 6.16857 6.30502 6.38879 6.56362 6.58795 7.18964 7.40221 7.64486 7.84996 8.09554 8.44397 9.02235 9.58984 11.07645 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.063839 B = 0.003672 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.498512 B = 7623.697966 C = 7741.325342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.161 3.839 10 N -0.464 5.464 11 C -0.005 4.005 12 C 0.052 3.948 13 O -0.374 6.374 14 C 0.070 3.930 15 C -0.122 4.122 16 H 0.093 0.907 17 C -0.149 4.149 18 C 0.044 3.956 19 O -0.379 6.379 20 C 0.054 3.946 21 C -0.003 4.003 22 H 0.262 0.738 23 H 0.030 0.970 24 H 0.005 0.995 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 -19.008 -6.123 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.148 4.148 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.035 3.965 10 N -0.189 5.189 11 C -0.134 4.134 12 C -0.006 4.006 13 O -0.293 6.293 14 C -0.007 4.007 15 C -0.140 4.140 16 H 0.111 0.889 17 C -0.187 4.187 18 C -0.033 4.033 19 O -0.298 6.298 20 C -0.023 4.023 21 C -0.132 4.132 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.023 0.977 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.313 -18.746 -5.753 20.316 hybrid contribution 0.110 1.035 -0.421 1.123 sum 5.423 -17.712 -6.174 19.525 Atomic orbital electron populations 1.69959 1.06083 1.26842 1.51041 1.25015 0.94907 0.99420 0.95423 0.86461 0.79786 0.82912 0.78052 1.20706 1.21218 1.19750 1.21097 0.93585 0.89748 1.49987 0.91862 1.20266 0.90568 0.88841 0.96822 1.68953 1.33780 1.01603 1.14526 1.24239 1.02247 0.92705 0.94222 1.24018 0.96327 0.88492 0.91789 1.87954 1.36584 1.39871 1.64843 1.22540 0.92983 0.89019 0.96123 1.22536 0.96917 0.96295 0.98301 0.88853 1.22941 0.99911 0.94321 1.01527 1.23408 0.83230 0.97038 0.99616 1.89129 1.25618 1.36118 1.78930 1.23484 1.00743 0.82304 0.95756 1.24047 0.98066 0.92981 0.98130 0.92879 0.95212 0.97695 0.91065 0.90675 0.88890 0.92957 0.93259 0.90198 0.90215 0.89153 0.92301 0.91942 0.88550 0.90388 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.66 9.39 -34.44 -0.32 -14.98 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.16 4.31 4.57 -4.97 -0.02 4.29 16 10 N -0.46 -10.34 6.32 -246.10 -1.55 -11.89 16 11 C 0.00 -0.09 7.55 -7.54 -0.06 -0.15 16 12 C 0.05 0.82 4.65 -26.20 -0.12 0.70 16 13 O -0.37 -5.53 10.31 -35.23 -0.36 -5.89 16 14 C 0.07 0.77 4.93 37.16 0.18 0.96 16 15 C -0.12 -1.22 3.39 -89.05 -0.30 -1.52 16 16 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.15 -1.16 6.74 -25.16 -0.17 -1.32 16 18 C 0.04 0.36 7.63 37.93 0.29 0.65 16 19 O -0.38 -4.37 11.65 -35.23 -0.41 -4.78 16 20 C 0.05 0.58 7.10 37.93 0.27 0.85 16 21 C 0.00 -0.05 7.52 -7.54 -0.06 -0.11 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 24 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 25 H 0.07 1.46 7.42 -51.93 -0.39 1.07 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.48 7.96 -51.93 -0.41 0.07 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.52 7.73 -51.93 -0.40 0.11 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -31.54 304.64 -8.58 -40.12 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.15 Total: -3.48 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -0.41 Total: -9.19 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.82 Total: -38.31 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.77 Total: -10.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.54 -8.58 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224475907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.449 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds