Wall clock time and date at job start Thu Apr 9 2020 12:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47377 * 300.00240 * 3 2 1 6 6 H 1.48500 * 109.47017 * 60.00274 * 3 2 1 7 7 C 1.37881 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00530 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99862 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.47960 * 110.99972 * 170.00156 * 10 9 7 12 12 C 1.53941 * 86.17873 * 222.41457 * 11 10 9 13 13 O 1.42898 * 113.73467 * 138.07642 * 12 11 10 14 14 C 1.42901 * 113.99787 * 149.99802 * 13 12 11 15 15 C 1.53002 * 109.46853 * 180.02562 * 14 13 12 16 16 H 1.09003 * 110.56236 * 307.67744 * 15 14 13 17 17 C 1.54505 * 110.50889 * 185.00472 * 15 14 13 18 18 C 1.54487 * 104.06179 * 241.35377 * 17 15 14 19 19 O 1.44421 * 104.79872 * 336.02098 * 18 17 15 20 20 C 1.44425 * 105.27967 * 40.51065 * 19 18 17 21 21 C 1.47958 * 110.99914 * 70.63754 * 10 9 7 22 22 H 0.97001 * 120.00087 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46923 * 59.99564 * 9 7 2 24 24 H 1.08998 * 109.47021 * 300.00348 * 9 7 2 25 25 H 1.09000 * 113.76028 * 108.10064 * 11 10 9 26 26 H 1.09003 * 113.75818 * 336.72758 * 11 10 9 27 27 H 1.08998 * 113.73063 * 269.25863 * 12 11 10 28 28 H 1.09004 * 109.46878 * 60.00333 * 14 13 12 29 29 H 1.08998 * 109.47584 * 299.99989 * 14 13 12 30 30 H 1.09003 * 110.51737 * 122.71297 * 17 15 14 31 31 H 1.09000 * 110.51297 * 359.97438 * 17 15 14 32 32 H 1.08997 * 110.37332 * 94.85398 * 18 17 15 33 33 H 1.09004 * 110.37288 * 217.19057 * 18 17 15 34 34 H 1.08999 * 110.37470 * 200.65665 * 20 19 18 35 35 H 1.09007 * 110.46197 * 78.36416 * 20 19 18 36 36 H 1.08990 * 113.76050 * 23.26899 * 21 10 9 37 37 H 1.09008 * 113.75718 * 251.89781 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5162 -4.9028 0.2393 12 6 2.6929 -5.2413 1.1724 13 8 2.2971 -5.8746 2.3907 14 6 3.2757 -6.7679 2.9259 15 6 2.7475 -7.3855 4.2223 16 1 2.4103 -6.6076 4.9074 17 6 3.8343 -8.2591 4.8878 18 6 3.2160 -9.6746 4.9108 19 8 1.7894 -9.4548 4.8640 20 6 1.6011 -8.3764 3.9220 21 6 2.8983 -3.7212 1.3027 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8896 25 1 1.4576 -5.5406 -0.6426 26 1 0.5618 -4.8001 0.7557 27 1 3.5144 -5.7555 0.6736 28 1 4.1944 -6.2188 3.1326 29 1 3.4795 -7.5585 2.2039 30 1 4.0344 -7.9132 5.9019 31 1 4.7477 -8.2513 4.2931 32 1 3.5409 -10.2448 4.0405 33 1 3.4901 -10.1935 5.8294 34 1 0.6347 -7.8981 4.0809 35 1 1.6772 -8.7461 2.8993 36 1 2.3481 -3.2730 2.1299 37 1 3.9440 -3.4150 1.2702 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224475908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:13 Heat of formation + Delta-G solvation = -60.988819 kcal Electronic energy + Delta-G solvation = -17221.761992 eV Core-core repulsion = 14386.177398 eV Total energy + Delta-G solvation = -2835.584594 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81341 -39.17141 -36.54892 -33.08746 -32.62983 -29.74018 -28.89022 -25.77503 -25.58874 -24.65080 -22.94871 -21.53202 -20.65942 -19.23661 -17.19817 -16.55069 -16.26563 -15.92363 -15.70289 -15.14103 -14.88605 -14.37589 -14.00934 -13.49461 -13.21505 -12.85228 -12.35055 -12.12930 -12.04369 -11.71401 -11.49310 -11.44658 -11.33204 -10.91027 -10.78554 -10.74185 -10.56544 -10.26233 -9.99456 -9.65548 -9.19001 -9.14240 -8.49856 -7.81878 -6.05241 -4.07177 3.29759 3.36882 3.41844 3.59178 3.84934 4.39085 4.42123 4.54887 4.71609 4.84799 4.89007 4.97534 5.04758 5.19059 5.25595 5.31030 5.39435 5.42020 5.47949 5.59948 5.66909 5.74169 5.88560 5.99740 6.13057 6.18541 6.40599 6.48332 6.58027 6.68410 7.23074 7.44439 7.62910 7.87627 8.10641 8.41085 9.00182 9.57230 11.06117 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049782 B = 0.003901 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.319745 B = 7175.476833 C = 7297.078789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.163 3.837 10 N -0.477 5.477 11 C 0.001 3.999 12 C 0.052 3.948 13 O -0.377 6.377 14 C 0.070 3.930 15 C -0.122 4.122 16 H 0.093 0.907 17 C -0.149 4.149 18 C 0.044 3.956 19 O -0.379 6.379 20 C 0.054 3.946 21 C 0.007 3.993 22 H 0.261 0.739 23 H 0.033 0.967 24 H 0.001 0.999 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.287 -16.990 8.154 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.037 3.963 10 N -0.201 5.201 11 C -0.129 4.129 12 C -0.006 4.006 13 O -0.295 6.295 14 C -0.007 4.007 15 C -0.141 4.141 16 H 0.112 0.888 17 C -0.187 4.187 18 C -0.033 4.033 19 O -0.298 6.298 20 C -0.023 4.023 21 C -0.122 4.122 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.018 0.982 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.149 -16.834 7.754 19.865 hybrid contribution 0.247 1.131 0.411 1.228 sum 7.396 -15.703 8.165 19.182 Atomic orbital electron populations 1.69969 1.06078 1.26745 1.50865 1.25001 0.94889 0.99407 0.95302 0.86425 0.80046 0.83312 0.77556 1.19670 1.20940 1.21030 1.21129 0.93455 0.89958 1.50339 0.91966 1.20205 0.90913 0.88529 0.96701 1.68520 1.21474 1.02113 1.28021 1.24166 0.96618 0.94748 0.97320 1.24430 0.98148 0.93314 0.84713 1.87975 1.41883 1.59714 1.39923 1.22529 0.91886 0.92388 0.93853 1.22535 0.95970 0.98538 0.97008 0.88843 1.22944 0.98653 0.95185 1.01919 1.23407 0.81625 0.96307 1.01952 1.89127 1.22670 1.54386 1.63611 1.23480 0.99480 0.86394 0.92934 1.24179 1.00901 0.93177 0.93980 0.92906 0.94889 0.98153 0.90082 0.91111 0.89465 0.92992 0.93362 0.90197 0.90231 0.92323 0.89163 0.88561 0.91972 0.90744 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.65 8.84 -34.44 -0.30 -14.96 16 8 H 0.06 1.77 7.80 -52.49 -0.41 1.36 16 9 C 0.16 4.35 4.58 -4.97 -0.02 4.33 16 10 N -0.48 -10.60 6.25 -239.97 -1.50 -12.10 16 11 C 0.00 0.01 7.81 -2.76 -0.02 -0.01 16 12 C 0.05 0.84 4.50 -25.79 -0.12 0.72 16 13 O -0.38 -5.71 10.28 -35.23 -0.36 -6.07 16 14 C 0.07 0.80 4.92 37.16 0.18 0.98 16 15 C -0.12 -1.26 3.39 -89.06 -0.30 -1.56 16 16 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.15 -1.19 6.74 -25.16 -0.17 -1.36 16 18 C 0.04 0.37 7.63 37.94 0.29 0.66 16 19 O -0.38 -4.44 11.65 -35.23 -0.41 -4.85 16 20 C 0.05 0.59 7.11 37.93 0.27 0.86 16 21 C 0.01 0.14 7.29 -2.76 -0.02 0.11 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.00 0.02 7.69 -51.93 -0.40 -0.38 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 27 H 0.09 1.23 7.87 -51.93 -0.41 0.82 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.49 7.96 -51.93 -0.41 0.07 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.66 7.74 -51.92 -0.40 0.26 16 36 H 0.07 1.58 7.78 -51.93 -0.40 1.18 16 37 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -31.39 304.54 -8.46 -39.85 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.18 Total: -3.25 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.31 Total: -8.72 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.76 Total: -38.37 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.77 Total: -10.92 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.39 -8.46 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224475908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.139 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds