Wall clock time and date at job start Thu Apr 9 2020 12:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47301 * 2 1 4 4 C 1.52998 * 109.47262 * 120.00505 * 2 1 3 5 5 C 1.53000 * 109.47263 * 59.99916 * 4 2 1 6 6 C 1.53000 * 109.47252 * 59.99795 * 5 4 2 7 7 H 1.09002 * 109.47232 * 60.00570 * 6 5 4 8 8 O 1.42897 * 109.46996 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47154 * 300.00272 * 6 5 4 10 10 H 1.09002 * 109.46822 * 299.99651 * 9 6 5 11 11 N 1.46504 * 109.46811 * 180.02562 * 9 6 5 12 12 C 1.34774 * 120.00240 * 84.99982 * 11 9 6 13 13 O 1.21691 * 119.99707 * 0.02562 * 12 11 9 14 14 C 1.46374 * 119.99951 * 179.97438 * 12 11 9 15 15 H 1.07991 * 120.00335 * 0.02562 * 14 12 11 16 16 C 1.40055 * 119.99881 * 180.02562 * 14 12 11 17 17 N 1.30678 * 119.99845 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00205 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47341 * 180.02562 * 18 16 14 20 20 H 1.48510 * 109.46748 * 300.00101 * 18 16 14 21 21 H 1.48498 * 109.47206 * 59.99778 * 18 16 14 22 22 C 1.52997 * 109.47053 * 60.00238 * 9 6 5 23 23 H 1.08998 * 109.46631 * 299.99471 * 1 2 3 24 24 H 1.08993 * 109.47266 * 59.99638 * 1 2 3 25 25 H 1.08996 * 109.46878 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46845 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47257 * 300.00368 * 3 2 1 28 28 H 1.08998 * 109.46846 * 60.00660 * 3 2 1 29 29 H 1.08998 * 109.47317 * 299.99604 * 4 2 1 30 30 H 1.09002 * 109.47294 * 179.97438 * 4 2 1 31 31 H 1.09007 * 109.46950 * 300.00135 * 5 4 2 32 32 H 1.09002 * 109.47190 * 179.97438 * 5 4 2 33 33 H 0.96701 * 114.00099 * 299.99684 * 8 6 5 34 34 H 0.97005 * 119.99919 * 264.99766 * 11 9 6 35 35 H 0.97001 * 119.99601 * 179.97438 * 17 16 14 36 36 H 1.08990 * 109.47430 * 59.99791 * 22 9 6 37 37 H 1.09002 * 109.46979 * 180.02562 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1639 1.2491 6 6 2.0400 -2.8850 -0.0002 7 1 3.1300 -2.8851 -0.0003 8 8 1.5631 -4.2321 -0.0006 9 6 1.5299 -2.1637 -1.2494 10 1 0.4399 -2.1637 -1.2493 11 7 2.0177 -2.8547 -2.4456 12 6 1.3404 -3.9112 -2.9368 13 8 0.3234 -4.2910 -2.3870 14 6 1.8276 -4.6012 -4.1323 15 1 2.7298 -4.2639 -4.6205 16 6 1.1234 -5.6989 -4.6431 17 7 0.0319 -6.1073 -4.0521 18 14 1.7454 -6.5799 -6.1683 19 1 0.8279 -7.6987 -6.5024 20 1 1.7960 -5.6255 -7.3051 21 1 3.1063 -7.1152 -5.9104 22 6 2.0401 -0.7212 -1.2493 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6768 -0.2076 2.1392 30 1 3.1301 -0.7217 1.2489 31 1 0.4400 -2.1638 1.2491 32 1 1.8938 -2.6779 2.1388 33 1 1.8482 -4.7504 0.7644 34 1 2.8282 -2.5517 -2.8841 35 1 -0.4560 -6.8673 -4.4061 36 1 3.1300 -0.7213 -1.2494 37 1 1.6763 -0.2072 -2.1391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001302160757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:26 Heat of formation + Delta-G solvation = -110.164626 kcal Electronic energy + Delta-G solvation = -18450.202437 eV Core-core repulsion = 15612.485420 eV Total energy + Delta-G solvation = -2837.717017 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68300 -36.73071 -35.68411 -33.07737 -32.06934 -31.17987 -28.86955 -27.23799 -25.92259 -25.37025 -22.29437 -20.93903 -19.27974 -18.37940 -16.98186 -16.48157 -15.36478 -15.17038 -14.55956 -14.25384 -14.16143 -13.69835 -13.42197 -12.88759 -12.72212 -12.22160 -12.01196 -11.89622 -11.79027 -11.52765 -11.32507 -11.05859 -10.95019 -10.82861 -10.63865 -10.42696 -10.26957 -10.13071 -10.07846 -9.72805 -9.20299 -8.69761 -7.34795 -7.24832 -6.00839 -4.46199 3.23676 3.27924 3.29942 4.21170 4.63138 4.64971 4.77026 4.82817 5.12963 5.17413 5.28646 5.44294 5.48456 5.65314 5.71098 5.73305 5.75210 5.82628 5.95241 5.98948 6.04085 6.09421 6.18236 6.19326 6.27110 6.40952 6.43652 6.51384 6.58856 6.90231 7.57406 8.09790 8.28479 8.46448 8.49702 9.18710 9.76660 10.79398 11.05009 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040972 B = 0.006233 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.224035 B = 4491.218579 C = 4747.861689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.103 4.103 5 C -0.154 4.154 6 C 0.095 3.905 7 H 0.039 0.961 8 O -0.524 6.524 9 C 0.163 3.837 10 H 0.083 0.917 11 N -0.761 5.761 12 C 0.561 3.439 13 O -0.558 6.558 14 C -0.549 4.549 15 H 0.062 0.938 16 C 0.089 3.911 17 N -0.770 5.770 18 Si 0.903 3.097 19 H -0.282 1.282 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.111 4.111 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.354 0.646 34 H 0.375 0.625 35 H 0.266 0.734 36 H 0.061 0.939 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 11.317 8.753 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.196 4.196 4 C -0.141 4.141 5 C -0.192 4.192 6 C 0.034 3.966 7 H 0.057 0.943 8 O -0.326 6.326 9 C 0.056 3.944 10 H 0.101 0.899 11 N -0.415 5.415 12 C 0.363 3.637 13 O -0.438 6.438 14 C -0.587 4.587 15 H 0.080 0.920 16 C -0.130 4.130 17 N -0.399 5.399 18 Si 0.728 3.272 19 H -0.207 1.207 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.150 4.150 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.198 0.802 34 H 0.205 0.795 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.928 11.079 8.576 14.550 hybrid contribution 1.118 -0.456 -0.357 1.259 sum 5.046 10.623 8.219 14.347 Atomic orbital electron populations 1.22004 0.94458 1.02809 1.01220 1.20520 0.96018 0.94799 0.95047 1.21847 1.00743 0.95488 1.01542 1.21531 1.00268 0.95153 0.97129 1.22366 1.02410 0.95938 0.98511 1.22286 0.95973 0.83562 0.94784 0.94291 1.87065 1.76405 1.21924 1.47169 1.20461 1.00127 0.88719 0.85116 0.89894 1.46182 1.30259 1.35819 1.29271 1.18063 0.83293 0.78079 0.84220 1.90604 1.25953 1.65597 1.61625 1.20846 1.11320 1.14908 1.11590 0.91982 1.25654 0.93987 0.96326 0.97028 1.70030 1.12991 1.21028 1.35839 0.86521 0.79189 0.79123 0.82335 1.20693 1.19475 1.19477 1.21832 1.00465 0.95170 0.97494 0.93090 0.92687 0.91388 0.92824 0.92625 0.92879 0.92109 0.92141 0.90809 0.92407 0.80242 0.79465 0.92370 0.91987 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 7.78 37.16 0.29 -1.62 16 2 C -0.06 -0.78 0.77 -154.50 -0.12 -0.90 16 3 C -0.14 -1.40 8.47 37.16 0.31 -1.08 16 4 C -0.10 -1.21 4.73 -26.73 -0.13 -1.34 16 5 C -0.15 -2.16 5.27 -26.73 -0.14 -2.31 16 6 C 0.10 1.71 3.12 -26.73 -0.08 1.63 16 7 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 8 O -0.52 -11.45 11.37 -52.66 -0.60 -12.04 16 9 C 0.16 3.19 2.02 -67.93 -0.14 3.05 16 10 H 0.08 1.90 5.86 -51.93 -0.30 1.60 16 11 N -0.76 -17.70 5.06 -55.21 -0.28 -17.98 16 12 C 0.56 16.51 7.20 -12.99 -0.09 16.42 16 13 O -0.56 -18.52 13.40 -12.23 -0.16 -18.69 16 14 C -0.55 -16.17 9.54 -35.63 -0.34 -16.51 16 15 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 16 C 0.09 2.58 5.50 -17.36 -0.10 2.49 16 17 N -0.77 -23.95 11.83 55.55 0.66 -23.30 16 18 Si 0.90 20.91 29.56 -169.99 -5.02 15.89 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.11 -1.64 4.20 -26.73 -0.11 -1.75 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.04 4.81 -51.93 -0.25 0.79 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.12 6.43 -51.92 -0.33 0.79 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.35 5.89 9.08 45.56 0.41 6.30 16 34 H 0.37 7.74 8.58 -40.82 -0.35 7.39 16 35 H 0.27 7.54 8.29 -40.82 -0.34 7.20 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 291.61 15.07 4.39 4.39 Total: -1.00 -36.20 291.61 -6.68 -42.88 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.02 Total: 10.75 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.64 Total: -1.92 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.38 Total: -41.27 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.76 Total: -30.73 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -36.20 -6.68 -42.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302160757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.283 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds