Wall clock time and date at job start Thu Apr 9 2020 12:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47508 * 270.00515 * 3 2 1 5 5 H 1.48501 * 109.47178 * 30.00691 * 3 2 1 6 6 H 1.48501 * 109.47005 * 150.00787 * 3 2 1 7 7 C 1.37886 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99547 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99705 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47113 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00138 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00168 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.63101 * 5.72641 * 13 11 10 15 15 C 1.53188 * 108.77149 * 233.58812 * 14 13 11 16 16 C 1.53045 * 109.31581 * 305.36053 * 15 14 13 17 17 C 1.53041 * 109.53547 * 61.36501 * 16 15 14 18 18 C 1.46932 * 120.63393 * 185.70020 * 13 11 10 19 19 H 1.08996 * 109.70549 * 246.27196 * 18 13 11 20 20 C 1.53005 * 109.58336 * 6.62896 * 18 13 11 21 21 O 1.42893 * 109.47300 * 61.98798 * 20 18 13 22 22 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47430 * 60.00007 * 9 7 2 24 24 H 1.09001 * 109.47244 * 299.99295 * 9 7 2 25 25 H 1.09000 * 109.46599 * 60.00164 * 10 9 7 26 26 H 1.09001 * 109.47210 * 299.99982 * 10 9 7 27 27 H 1.08998 * 109.58905 * 113.79928 * 14 13 11 28 28 H 1.09003 * 109.69867 * 353.43869 * 14 13 11 29 29 H 1.09004 * 109.49514 * 185.40936 * 15 14 13 30 30 H 1.08999 * 109.53239 * 65.33178 * 15 14 13 31 31 H 1.08997 * 109.45625 * 301.34975 * 16 15 14 32 32 H 1.09005 * 109.44928 * 181.38100 * 16 15 14 33 33 H 1.09005 * 109.49540 * 178.68377 * 17 16 15 34 34 H 1.09003 * 109.51870 * 58.60854 * 17 16 15 35 35 H 1.09000 * 109.47148 * 301.98786 * 20 18 13 36 36 H 1.08999 * 109.47244 * 181.99197 * 20 18 13 37 37 H 0.96698 * 113.99902 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6367 -0.0022 12 8 6.1349 -1.5863 -0.0026 13 7 6.2023 -3.8039 -0.0028 14 6 5.4871 -5.0811 -0.1285 15 6 5.8956 -5.9913 1.0340 16 6 7.4200 -6.1246 1.0610 17 6 8.0503 -4.7475 1.2812 18 6 7.6662 -3.8233 0.1215 19 1 8.1088 -4.1937 -0.8031 20 6 8.1758 -2.4083 0.4031 21 8 7.6384 -1.9466 1.6441 22 1 -0.4849 0.8401 0.0004 23 1 3.8753 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8912 25 1 3.6578 -3.1506 -0.8908 26 1 3.6585 -3.1503 0.8892 27 1 5.7499 -5.5556 -1.0739 28 1 4.4119 -4.9051 -0.0943 29 1 5.4467 -6.9756 0.9005 30 1 5.5516 -5.5591 1.9736 31 1 7.7655 -6.5345 0.1119 32 1 7.7117 -6.7915 1.8723 33 1 9.1351 -4.8465 1.3236 34 1 7.6865 -4.3261 2.2183 35 1 7.8603 -1.7420 -0.3998 36 1 9.2642 -2.4187 0.4599 37 1 7.9197 -1.0538 1.8866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324306163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:35 Heat of formation + Delta-G solvation = -84.558434 kcal Electronic energy + Delta-G solvation = -18311.326948 eV Core-core repulsion = 15474.720299 eV Total energy + Delta-G solvation = -2836.606649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.24293 -37.14770 -36.08405 -33.46931 -32.68122 -31.81944 -30.85221 -27.03926 -25.74848 -24.30797 -22.23290 -21.20068 -20.13741 -18.48025 -17.26691 -17.05023 -16.09252 -15.46083 -15.09756 -14.57777 -14.23321 -14.11219 -13.83136 -13.59261 -13.20473 -13.04421 -12.63409 -12.48364 -12.09468 -11.56605 -11.36117 -11.28500 -10.96625 -10.91549 -10.70534 -10.45227 -10.05632 -10.00711 -9.75224 -9.69038 -9.13147 -8.48100 -8.43388 -8.24239 -5.99685 -3.97704 3.20460 3.34816 3.39708 3.46094 3.57382 4.49550 4.53882 4.71875 4.76977 4.83550 5.06871 5.21110 5.31322 5.36053 5.44028 5.47293 5.60120 5.70576 5.75359 5.81264 5.90422 5.95707 6.08308 6.10670 6.16547 6.24802 6.38121 6.74521 6.88148 7.42261 7.51198 7.78415 7.87170 8.01640 8.55059 8.82021 9.04145 9.63743 11.13345 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.006505 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.173007 B = 4303.276586 C = 4917.238727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.121 4.121 11 C 0.521 3.479 12 O -0.525 6.525 13 N -0.617 5.617 14 C 0.108 3.892 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.128 4.128 18 C 0.149 3.851 19 H 0.075 0.925 20 C 0.077 3.923 21 O -0.556 6.556 22 H 0.262 0.738 23 H 0.024 0.976 24 H 0.017 0.983 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.024 0.976 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.880 -11.701 0.761 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.034 4.034 10 C -0.161 4.161 11 C 0.312 3.688 12 O -0.401 6.401 13 N -0.353 5.353 14 C -0.015 4.015 15 C -0.175 4.175 16 C -0.156 4.156 17 C -0.166 4.166 18 C 0.045 3.955 19 H 0.092 0.908 20 C -0.001 4.001 21 O -0.361 6.361 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 16.760 -11.593 0.749 20.392 hybrid contribution 0.623 1.199 -0.004 1.351 sum 17.382 -10.393 0.745 20.266 Atomic orbital electron populations 1.69918 1.06298 1.26890 1.51311 1.24974 0.94696 0.99208 0.94407 0.86781 0.80645 0.83397 0.78628 1.20348 1.21523 1.18518 1.21143 0.89425 0.94494 1.51040 0.91037 1.19345 0.96211 0.90330 0.97498 1.21680 0.88688 1.02960 1.02738 1.21290 0.91115 0.82408 0.73983 1.90507 1.69086 1.31750 1.48745 1.48153 1.05869 1.06449 1.74878 1.21698 0.98052 0.83983 0.97790 1.21926 0.96184 0.99701 0.99643 1.21513 0.95533 0.96954 1.01596 1.21900 0.99960 0.94904 0.99865 1.21240 0.81252 0.95474 0.97521 0.90754 1.22409 0.93491 0.94423 0.89751 1.86435 1.75308 1.35671 1.38680 0.92786 0.95797 0.96479 0.90144 0.89897 0.91878 0.88932 0.90958 0.91236 0.92144 0.91954 0.91625 0.90431 0.89771 0.95846 0.78149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 0.10 3.33 -27.88 -0.09 0.01 16 10 C -0.12 -2.46 4.00 -27.88 -0.11 -2.57 16 11 C 0.52 9.93 7.16 -10.99 -0.08 9.85 16 12 O -0.52 -11.20 10.66 -18.83 -0.20 -11.40 16 13 N -0.62 -9.24 2.97 -165.22 -0.49 -9.73 16 14 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 15 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 16 C -0.12 -1.11 5.88 -26.69 -0.16 -1.27 16 17 C -0.13 -1.44 5.28 -26.61 -0.14 -1.58 16 18 C 0.15 1.94 3.29 -67.60 -0.22 1.72 16 19 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 20 C 0.08 1.09 5.78 37.16 0.21 1.31 16 21 O -0.56 -8.93 10.46 -59.61 -0.62 -9.55 16 22 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 24 H 0.02 0.44 7.53 -51.93 -0.39 0.05 16 25 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 26 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.13 5.94 -51.93 -0.31 0.82 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.05 7.45 -51.93 -0.39 0.67 16 35 H 0.08 1.39 5.92 -52.18 -0.31 1.08 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.37 4.90 9.12 45.56 0.42 5.31 16 LS Contribution 288.73 15.07 4.35 4.35 Total: -1.00 -33.93 288.73 -7.19 -41.13 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.13 Total: 1.07 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.20 Total: -6.43 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.28 Total: -37.34 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.82 Total: -20.96 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.93 -7.19 -41.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324306163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.430 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds