Wall clock time and date at job start Thu Apr 9 2020 12:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47508 * 270.00515 * 3 2 1 5 5 H 1.48501 * 109.47178 * 30.00691 * 3 2 1 6 6 H 1.48501 * 109.47005 * 150.00787 * 3 2 1 7 7 C 1.37886 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99547 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99705 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47113 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00138 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00168 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.63101 * 5.72641 * 13 11 10 15 15 C 1.53188 * 108.77149 * 233.58812 * 14 13 11 16 16 C 1.53045 * 109.31581 * 305.36053 * 15 14 13 17 17 C 1.53041 * 109.53547 * 61.36501 * 16 15 14 18 18 C 1.46932 * 120.63393 * 185.70020 * 13 11 10 19 19 H 1.08996 * 109.70549 * 246.27196 * 18 13 11 20 20 C 1.53005 * 109.58336 * 6.62896 * 18 13 11 21 21 O 1.42893 * 109.47300 * 61.98798 * 20 18 13 22 22 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47430 * 60.00007 * 9 7 2 24 24 H 1.09001 * 109.47244 * 299.99295 * 9 7 2 25 25 H 1.09000 * 109.46599 * 60.00164 * 10 9 7 26 26 H 1.09001 * 109.47210 * 299.99982 * 10 9 7 27 27 H 1.08998 * 109.58905 * 113.79928 * 14 13 11 28 28 H 1.09003 * 109.69867 * 353.43869 * 14 13 11 29 29 H 1.09004 * 109.49514 * 185.40936 * 15 14 13 30 30 H 1.08999 * 109.53239 * 65.33178 * 15 14 13 31 31 H 1.08997 * 109.45625 * 301.34975 * 16 15 14 32 32 H 1.09005 * 109.44928 * 181.38100 * 16 15 14 33 33 H 1.09005 * 109.49540 * 178.68377 * 17 16 15 34 34 H 1.09003 * 109.51870 * 58.60854 * 17 16 15 35 35 H 1.09000 * 109.47148 * 301.98786 * 20 18 13 36 36 H 1.08999 * 109.47244 * 181.99197 * 20 18 13 37 37 H 0.96698 * 113.99902 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6367 -0.0022 12 8 6.1349 -1.5863 -0.0026 13 7 6.2023 -3.8039 -0.0028 14 6 5.4871 -5.0811 -0.1285 15 6 5.8956 -5.9913 1.0340 16 6 7.4200 -6.1246 1.0610 17 6 8.0503 -4.7475 1.2812 18 6 7.6662 -3.8233 0.1215 19 1 8.1088 -4.1937 -0.8031 20 6 8.1758 -2.4083 0.4031 21 8 7.6384 -1.9466 1.6441 22 1 -0.4849 0.8401 0.0004 23 1 3.8753 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8912 25 1 3.6578 -3.1506 -0.8908 26 1 3.6585 -3.1503 0.8892 27 1 5.7499 -5.5556 -1.0739 28 1 4.4119 -4.9051 -0.0943 29 1 5.4467 -6.9756 0.9005 30 1 5.5516 -5.5591 1.9736 31 1 7.7655 -6.5345 0.1119 32 1 7.7117 -6.7915 1.8723 33 1 9.1351 -4.8465 1.3236 34 1 7.6865 -4.3261 2.2183 35 1 7.8603 -1.7420 -0.3998 36 1 9.2642 -2.4187 0.4599 37 1 7.9197 -1.0538 1.8866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324306163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:34 Heat of formation + Delta-G solvation = -108.208100 kcal Electronic energy + Delta-G solvation = -18312.352475 eV Core-core repulsion = 15474.720299 eV Total energy + Delta-G solvation = -2837.632176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47740 -38.37926 -37.23164 -35.52485 -33.90501 -33.26501 -32.36578 -28.47276 -27.29983 -25.32220 -23.74424 -22.39336 -21.48921 -19.86284 -18.98329 -18.39321 -17.62163 -16.67407 -16.50551 -16.21005 -15.47555 -15.31458 -14.99680 -14.89999 -14.66517 -14.47480 -14.19490 -13.80912 -13.42840 -13.30001 -12.87727 -12.50458 -12.25013 -12.00868 -11.96111 -11.81076 -11.75449 -11.58188 -11.44351 -11.29315 -10.98672 -10.78391 -9.78858 -9.41624 -8.31977 -6.34875 1.32493 1.34225 1.49967 1.80476 2.12942 2.34874 3.03622 3.45935 3.79453 3.87330 3.96403 4.07193 4.21409 4.32342 4.37870 4.45639 4.47513 4.53914 4.67010 4.78530 4.88444 4.96204 4.97660 5.09801 5.14271 5.23829 5.24867 5.33666 5.45506 5.53059 5.60761 5.78195 6.23594 6.53154 6.71254 6.96036 7.30354 7.41784 8.83923 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.006505 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.173007 B = 4303.276586 C = 4917.238727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.012 3.988 10 C -0.115 4.115 11 C 0.517 3.483 12 O -0.555 6.555 13 N -0.610 5.610 14 C 0.098 3.902 15 C -0.133 4.133 16 C -0.114 4.114 17 C -0.121 4.121 18 C 0.140 3.860 19 H 0.100 0.900 20 C 0.075 3.925 21 O -0.578 6.578 22 H 0.267 0.733 23 H 0.007 0.993 24 H 0.009 0.991 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.919 -13.024 0.394 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.065 0.935 9 C -0.026 4.026 10 C -0.154 4.154 11 C 0.307 3.693 12 O -0.435 6.435 13 N -0.345 5.345 14 C -0.024 4.024 15 C -0.171 4.171 16 C -0.152 4.152 17 C -0.159 4.159 18 C 0.038 3.962 19 H 0.118 0.882 20 C -0.002 4.002 21 O -0.384 6.384 22 H 0.076 0.924 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 18.814 -12.964 0.381 22.851 hybrid contribution -0.021 1.517 0.111 1.521 sum 18.793 -11.446 0.492 22.010 Atomic orbital electron populations 1.70030 1.07816 1.28112 1.52538 1.25820 0.95513 1.02908 0.94177 0.85784 0.79205 0.79284 0.79158 1.19239 1.20334 1.18592 1.21446 0.91361 0.93642 1.50385 0.93512 1.19155 0.93735 0.93534 0.96142 1.21488 0.90579 0.99712 1.03664 1.20925 0.90388 0.83390 0.74603 1.90519 1.69331 1.33107 1.50496 1.48136 1.07052 1.06202 1.73091 1.21993 0.97499 0.82958 0.99919 1.21916 0.97228 1.00255 0.97721 1.21520 0.94438 0.95989 1.03221 1.21841 1.01348 0.95290 0.97464 1.21563 0.79757 0.95395 0.99529 0.88185 1.22443 0.95104 0.94560 0.88125 1.86402 1.76087 1.36412 1.39464 0.92366 0.97428 0.97257 0.88774 0.89523 0.89243 0.89756 0.88451 0.93333 0.90171 0.90546 0.89463 0.93266 0.92521 0.92904 0.77268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.05 13.96 21.45 0.30 -59.76 16 2 C 0.01 0.81 5.47 84.66 0.46 1.27 16 3 Si 0.94 47.53 27.47 68.60 1.88 49.42 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.26 -13.15 6.54 99.48 0.65 -12.50 16 7 C -0.53 -31.50 9.66 25.60 0.25 -31.25 16 8 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 9 C 0.01 0.63 3.33 29.85 0.10 0.73 16 10 C -0.11 -4.68 4.00 29.85 0.12 -4.56 16 11 C 0.52 19.52 7.16 87.66 0.63 20.15 16 12 O -0.56 -23.86 10.66 20.26 0.22 -23.64 16 13 N -0.61 -17.29 2.97 -795.03 -2.36 -19.65 16 14 C 0.10 2.09 6.34 86.36 0.55 2.64 16 15 C -0.13 -2.34 6.08 30.67 0.19 -2.15 16 16 C -0.11 -1.71 5.88 30.62 0.18 -1.53 16 17 C -0.12 -2.37 5.28 30.67 0.16 -2.21 16 18 C 0.14 3.31 3.29 44.97 0.15 3.46 16 19 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16 20 C 0.08 2.04 5.78 71.98 0.42 2.46 16 21 O -0.58 -18.40 10.46 -125.67 -1.31 -19.71 16 22 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 23 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 24 H 0.01 0.48 7.53 -2.39 -0.02 0.46 16 25 H 0.09 3.52 7.71 -2.39 -0.02 3.50 16 26 H 0.09 3.42 7.93 -2.39 -0.02 3.40 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.93 5.94 -2.39 -0.01 1.91 16 29 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.09 1.34 8.14 -2.38 -0.02 1.33 16 34 H 0.05 1.26 7.45 -2.39 -0.02 1.24 16 35 H 0.06 1.86 5.92 -6.33 -0.04 1.82 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.38 10.09 9.12 -74.06 -0.68 9.41 16 Total: -1.00 -74.00 288.73 2.22 -71.78 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.30 Total: 12.55 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.20 Total: -10.99 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.06 Total: -79.41 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.10 Total: -43.35 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.88 Total: 49.42 kcal Total: -74.00 2.22 -71.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324306163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.430 kcal (2) G-P(sol) polarization free energy of solvation -74.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds