Wall clock time and date at job start Thu Apr 9 2020 12:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 120.00061 * 2 1 4 4 H 1.48498 * 109.46775 * 239.99620 * 3 2 1 5 5 H 1.48500 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46977 * 119.99608 * 3 2 1 7 7 C 1.37874 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00455 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46931 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 C 1.53004 * 109.41904 * 178.67276 * 16 15 14 18 18 O 1.42896 * 109.46942 * 295.13190 * 17 16 15 19 19 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 20 20 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 21 21 H 0.97008 * 119.99666 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47219 * 59.99601 * 9 7 2 23 23 H 1.09001 * 109.47044 * 299.99568 * 9 7 2 24 24 H 1.09001 * 109.46646 * 59.99769 * 10 9 7 25 25 H 1.09001 * 109.47188 * 299.99912 * 10 9 7 26 26 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 27 27 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 28 28 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 29 29 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 30 30 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 31 31 H 1.09001 * 109.46592 * 55.13132 * 17 16 15 32 32 H 1.08997 * 109.47133 * 175.12697 * 17 16 15 33 33 H 0.96704 * 113.99489 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.50232 * 301.42239 * 19 16 15 35 35 H 1.09007 * 109.52628 * 181.33900 * 19 16 15 36 36 H 1.08994 * 109.58580 * 353.38021 * 20 13 11 37 37 H 1.09006 * 109.57831 * 113.65514 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0018 14 6 1.4450 -7.4148 0.0030 15 6 1.9498 -8.2692 -1.1640 16 6 3.4744 -8.4024 -1.0673 17 6 3.9818 -9.2823 -2.2115 18 8 3.4725 -10.6082 -2.0546 19 6 4.1183 -7.0175 -1.1650 20 6 3.6348 -6.1506 0.0024 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6044 -0.8895 26 1 1.6272 -7.9358 0.9429 27 1 0.3765 -7.2329 -0.1127 28 1 1.4912 -9.2568 -1.1169 29 1 1.6861 -7.7896 -2.1067 30 1 3.7385 -8.8591 -0.1134 31 1 3.6421 -8.8727 -3.1628 32 1 5.0714 -9.3073 -2.1950 33 1 3.7541 -11.2221 -2.7468 34 1 3.8343 -6.5500 -2.1077 35 1 5.2029 -7.1160 -1.1199 36 1 4.0114 -5.1346 -0.1161 37 1 3.9951 -6.5664 0.9435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326070454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:40 Heat of formation + Delta-G solvation = -108.790949 kcal Electronic energy + Delta-G solvation = -17478.096678 eV Core-core repulsion = 14640.439229 eV Total energy + Delta-G solvation = -2837.657450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.89346 -37.96659 -36.31286 -33.50475 -33.00935 -31.53526 -30.48308 -27.48245 -25.64977 -23.28720 -23.11744 -21.44466 -20.21191 -18.53820 -17.51417 -16.96964 -15.86649 -15.49183 -15.30808 -15.04687 -14.54082 -14.40563 -13.88773 -13.72354 -13.07626 -12.94855 -12.53132 -12.33325 -12.07878 -11.98904 -11.30626 -11.17413 -10.95656 -10.89022 -10.70802 -10.64188 -10.57039 -10.17777 -9.93161 -9.57977 -9.15183 -8.94921 -8.37949 -8.28461 -5.94117 -3.98688 3.25900 3.34116 3.35355 3.40254 3.42209 3.92191 4.48098 4.54098 4.62951 4.85531 5.01464 5.13717 5.17047 5.29144 5.34730 5.40558 5.42939 5.55137 5.69443 5.75314 5.80153 5.90130 6.01488 6.09408 6.23021 6.24052 6.27620 6.80023 6.94757 7.33324 7.75993 7.81272 7.88911 8.09571 8.40581 8.79468 9.09744 9.64643 11.16817 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048161 B = 0.004389 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.245582 B = 6377.688906 C = 6737.773902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.512 3.488 12 O -0.535 6.535 13 N -0.626 5.626 14 C 0.109 3.891 15 C -0.123 4.123 16 C -0.087 4.087 17 C 0.080 3.920 18 O -0.573 6.573 19 C -0.130 4.130 20 C 0.111 3.889 21 H 0.261 0.739 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.377 0.623 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -18.721 -3.487 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.302 3.698 12 O -0.410 6.410 13 N -0.362 5.362 14 C -0.013 4.013 15 C -0.162 4.162 16 C -0.106 4.106 17 C 0.002 3.998 18 O -0.378 6.378 19 C -0.168 4.168 20 C -0.013 4.013 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.224 0.776 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.684 -18.297 -2.950 20.911 hybrid contribution 0.885 0.608 -0.558 1.210 sum 10.569 -17.689 -3.508 20.902 Atomic orbital electron populations 1.69995 1.06060 1.26669 1.50118 1.25026 0.94820 0.99197 0.95318 0.86654 0.79545 0.83205 0.78524 1.20267 1.21290 1.20245 1.21185 0.92862 0.91038 1.51491 0.92681 1.18904 0.93192 0.89370 0.98600 1.21876 1.00710 0.92043 1.02185 1.21578 0.88418 0.85505 0.74253 1.90652 1.14442 1.87178 1.48774 1.48310 1.06389 1.05955 1.75535 1.21487 0.98444 0.83880 0.97527 1.21950 0.94762 1.00299 0.99151 1.21188 0.96126 0.94466 0.98784 1.22250 0.96695 0.82684 0.98127 1.86483 1.76331 1.21047 1.53973 1.21928 1.00178 0.94755 0.99935 1.21656 0.80306 1.01554 0.97754 0.92901 0.95870 0.95834 0.90325 0.90334 0.92208 0.89104 0.90357 0.91752 0.90376 0.93615 0.93704 0.77626 0.91068 0.90660 0.88799 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.67 3.99 -27.88 -0.11 -2.78 16 11 C 0.51 10.38 7.70 -10.99 -0.08 10.29 16 12 O -0.54 -13.13 15.39 5.56 0.09 -13.04 16 13 N -0.63 -9.65 2.97 -172.74 -0.51 -10.16 16 14 C 0.11 1.51 6.42 -3.71 -0.02 1.49 16 15 C -0.12 -1.42 5.30 -26.45 -0.14 -1.56 16 16 C -0.09 -0.84 2.39 -90.42 -0.22 -1.06 16 17 C 0.08 0.65 6.43 37.16 0.24 0.89 16 18 O -0.57 -4.97 13.18 -35.23 -0.46 -5.43 16 19 C -0.13 -1.22 5.37 -26.59 -0.14 -1.36 16 20 C 0.11 1.28 6.34 -3.68 -0.02 1.25 16 21 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 22 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.08 1.50 7.94 -51.93 -0.41 1.08 16 25 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 28 H 0.08 0.87 7.80 -51.93 -0.41 0.47 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.38 1.56 9.12 45.56 0.42 1.98 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 301.32 15.07 4.54 4.54 Total: -1.00 -35.12 301.32 -6.91 -42.03 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -5.24 Total: -1.96 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.03 Total: -5.75 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.22 Total: -37.12 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.38 Total: -18.47 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.12 -6.91 -42.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326070454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.766 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds