Wall clock time and date at job start Thu Apr 9 2020 12:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 120.00061 * 2 1 4 4 H 1.48498 * 109.46775 * 239.99620 * 3 2 1 5 5 H 1.48500 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46977 * 119.99608 * 3 2 1 7 7 C 1.37874 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00455 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46931 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 C 1.53004 * 109.41904 * 178.67276 * 16 15 14 18 18 O 1.42896 * 109.46942 * 295.13190 * 17 16 15 19 19 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 20 20 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 21 21 H 0.97008 * 119.99666 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47219 * 59.99601 * 9 7 2 23 23 H 1.09001 * 109.47044 * 299.99568 * 9 7 2 24 24 H 1.09001 * 109.46646 * 59.99769 * 10 9 7 25 25 H 1.09001 * 109.47188 * 299.99912 * 10 9 7 26 26 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 27 27 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 28 28 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 29 29 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 30 30 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 31 31 H 1.09001 * 109.46592 * 55.13132 * 17 16 15 32 32 H 1.08997 * 109.47133 * 175.12697 * 17 16 15 33 33 H 0.96704 * 113.99489 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.50232 * 301.42239 * 19 16 15 35 35 H 1.09007 * 109.52628 * 181.33900 * 19 16 15 36 36 H 1.08994 * 109.58580 * 353.38021 * 20 13 11 37 37 H 1.09006 * 109.57831 * 113.65514 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0018 14 6 1.4450 -7.4148 0.0030 15 6 1.9498 -8.2692 -1.1640 16 6 3.4744 -8.4024 -1.0673 17 6 3.9818 -9.2823 -2.2115 18 8 3.4725 -10.6082 -2.0546 19 6 4.1183 -7.0175 -1.1650 20 6 3.6348 -6.1506 0.0024 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6044 -0.8895 26 1 1.6272 -7.9358 0.9429 27 1 0.3765 -7.2329 -0.1127 28 1 1.4912 -9.2568 -1.1169 29 1 1.6861 -7.7896 -2.1067 30 1 3.7385 -8.8591 -0.1134 31 1 3.6421 -8.8727 -3.1628 32 1 5.0714 -9.3073 -2.1950 33 1 3.7541 -11.2221 -2.7468 34 1 3.8343 -6.5500 -2.1077 35 1 5.2029 -7.1160 -1.1199 36 1 4.0114 -5.1346 -0.1161 37 1 3.9951 -6.5664 0.9435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326070454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:38 Heat of formation + Delta-G solvation = -135.089058 kcal Electronic energy + Delta-G solvation = -17479.237050 eV Core-core repulsion = 14640.439229 eV Total energy + Delta-G solvation = -2838.797821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20992 -39.04574 -37.22544 -35.60702 -34.16098 -33.10329 -31.89987 -28.63344 -27.41591 -24.60647 -24.09517 -23.03676 -21.29284 -19.85125 -18.84781 -18.12239 -17.64664 -16.75859 -16.66615 -16.42731 -15.95843 -15.35254 -15.08138 -14.86707 -14.39270 -14.21005 -14.16261 -13.61785 -13.37384 -13.18664 -13.13630 -12.76980 -12.50202 -12.22506 -11.92631 -11.80151 -11.65804 -11.51127 -11.44322 -11.31704 -10.81032 -10.63766 -10.55790 -9.63288 -8.17312 -6.32034 1.42649 1.47644 1.55335 1.67758 2.06440 2.44102 3.15471 3.33473 3.66142 3.79602 3.90532 4.09987 4.21893 4.31115 4.39556 4.48093 4.51547 4.58065 4.58570 4.68594 4.84564 4.84657 4.93626 5.02133 5.03084 5.12900 5.17399 5.44269 5.48294 5.61560 5.66617 5.84896 6.17226 6.42008 6.86223 6.95647 7.26284 7.38480 8.95377 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048161 B = 0.004389 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.245582 B = 6377.688906 C = 6737.773902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.042 3.958 10 C -0.114 4.114 11 C 0.507 3.493 12 O -0.594 6.594 13 N -0.613 5.613 14 C 0.106 3.894 15 C -0.115 4.115 16 C -0.086 4.086 17 C 0.082 3.918 18 O -0.593 6.593 19 C -0.123 4.123 20 C 0.099 3.901 21 H 0.263 0.737 22 H -0.020 1.020 23 H -0.020 1.020 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.481 -19.330 -3.654 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.154 4.154 11 C 0.298 3.702 12 O -0.475 6.475 13 N -0.347 5.347 14 C -0.017 4.017 15 C -0.153 4.153 16 C -0.104 4.104 17 C 0.005 3.995 18 O -0.402 6.402 19 C -0.161 4.161 20 C -0.023 4.023 21 H 0.071 0.929 22 H -0.002 1.002 23 H -0.002 1.002 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.441 -18.971 -3.131 23.460 hybrid contribution -0.273 0.682 -0.500 0.889 sum 13.168 -18.289 -3.631 22.827 Atomic orbital electron populations 1.70189 1.08424 1.27888 1.51415 1.26174 0.95718 1.04061 0.94563 0.85344 0.78018 0.77134 0.79555 1.18554 1.21425 1.18572 1.21683 0.94043 0.91472 1.50933 0.90390 1.18694 0.93705 0.92610 0.94507 1.21630 0.99254 0.89986 1.04502 1.21460 0.87656 0.86826 0.74275 1.90630 1.16818 1.88065 1.51965 1.48305 1.08339 1.04931 1.73113 1.21617 0.96864 0.83509 0.99665 1.21864 0.96768 0.99534 0.97122 1.21190 0.94158 0.95192 0.99890 1.22209 0.97828 0.82287 0.97191 1.86428 1.76874 1.21603 1.55276 1.21899 1.02067 0.93789 0.98308 1.22065 0.77288 1.02780 1.00118 0.92863 1.00197 1.00164 0.87827 0.87833 0.90278 0.92132 0.89956 0.93148 0.89932 0.93624 0.91504 0.75442 0.91912 0.87292 0.88393 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.44 13.29 21.45 0.28 -60.16 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.98 44.41 29.54 68.60 2.03 46.43 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.43 4.26 29.85 0.13 2.56 16 10 C -0.11 -4.74 3.99 29.85 0.12 -4.62 16 11 C 0.51 21.05 7.70 87.66 0.67 21.72 16 12 O -0.59 -31.06 15.39 -3.03 -0.05 -31.10 16 13 N -0.61 -18.42 2.97 -818.81 -2.43 -20.86 16 14 C 0.11 2.90 6.42 86.36 0.55 3.45 16 15 C -0.11 -2.51 5.30 30.78 0.16 -2.35 16 16 C -0.09 -1.40 2.39 -10.66 -0.03 -1.43 16 17 C 0.08 1.08 6.43 71.98 0.46 1.54 16 18 O -0.59 -8.69 13.18 -148.98 -1.96 -10.65 16 19 C -0.12 -1.87 5.37 30.69 0.16 -1.70 16 20 C 0.10 1.98 6.34 86.38 0.55 2.53 16 21 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 22 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 23 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 24 H 0.10 3.77 7.94 -2.39 -0.02 3.75 16 25 H 0.10 3.76 7.69 -2.39 -0.02 3.74 16 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 2.03 7.00 -2.39 -0.02 2.02 16 28 H 0.08 1.75 7.80 -2.39 -0.02 1.73 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.40 2.24 9.12 -74.05 -0.68 1.56 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.10 1.91 5.93 -2.39 -0.01 1.90 16 37 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -80.47 301.32 1.72 -78.75 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.37 Total: 6.91 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 3.48 Total: -9.32 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.15 Total: -81.02 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -2.01 Total: -41.76 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -80.47 1.72 -78.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326070454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.337 kcal (2) G-P(sol) polarization free energy of solvation -80.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds