Wall clock time and date at job start Thu Apr 9 2020 12:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00280 * 2 1 4 4 H 1.48495 * 109.47139 * 240.00617 * 3 2 1 5 5 H 1.48504 * 109.46802 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47066 * 120.00446 * 3 2 1 7 7 C 1.37876 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 H 1.09004 * 110.45334 * 54.30115 * 16 15 14 18 18 C 1.54510 * 110.51279 * 176.90410 * 16 15 14 19 19 C 1.54483 * 104.05916 * 118.64996 * 18 16 15 20 20 O 1.44425 * 104.80516 * 23.97521 * 19 18 16 21 21 C 1.44644 * 105.37080 * 319.56900 * 20 19 18 22 22 H 0.96996 * 119.99509 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47154 * 60.00159 * 9 7 2 24 24 H 1.09003 * 109.46515 * 299.99635 * 9 7 2 25 25 H 1.09004 * 109.47131 * 59.99662 * 10 9 7 26 26 H 1.09000 * 109.47504 * 299.99966 * 10 9 7 27 27 H 1.09004 * 109.47066 * 60.00025 * 11 10 9 28 28 H 1.08994 * 109.47405 * 299.99855 * 11 10 9 29 29 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 30 30 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 31 31 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 32 32 H 1.09002 * 110.51352 * 237.29138 * 18 16 15 33 33 H 1.08994 * 110.51275 * 0.02562 * 18 16 15 34 34 H 1.09000 * 110.37140 * 142.81486 * 19 18 16 35 35 H 1.09008 * 110.36904 * 265.03415 * 19 18 16 36 36 H 1.08994 * 110.33669 * 281.59008 * 21 20 19 37 37 H 1.08996 * 110.50445 * 159.18254 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4594 -6.1325 -0.0031 13 8 3.6519 -5.9110 -0.0043 14 7 2.0102 -7.4032 0.0027 15 6 2.9621 -8.5167 0.0070 16 6 2.1972 -9.8418 0.0126 17 1 1.4903 -9.8770 -0.8165 18 6 3.1779 -11.0334 -0.0610 19 6 2.9238 -11.8101 1.2500 20 8 1.5789 -11.4523 1.6362 21 6 1.4636 -10.0376 1.3579 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8898 25 1 2.8726 -3.6047 0.8877 26 1 2.8712 -3.6040 -0.8922 27 1 0.8525 -5.0447 -0.8905 28 1 0.8545 -5.0450 0.8894 29 1 1.0565 -7.5805 0.0040 30 1 3.5883 -8.4628 -0.8836 31 1 3.5893 -8.4551 0.8963 32 1 2.9544 -11.6592 -0.9251 33 1 4.2077 -10.6787 -0.1010 34 1 2.9956 -12.8836 1.0751 35 1 3.6350 -11.5029 2.0169 36 1 1.9483 -9.4565 2.1424 37 1 0.4162 -9.7510 1.2643 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326727868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:44 Heat of formation + Delta-G solvation = -111.573848 kcal Electronic energy + Delta-G solvation = -16740.147035 eV Core-core repulsion = 13902.368910 eV Total energy + Delta-G solvation = -2837.778125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.09539 -39.13226 -35.33234 -34.15056 -32.50640 -31.91824 -29.72135 -28.00473 -25.78436 -23.70982 -22.95819 -20.99445 -20.55283 -19.66838 -17.07111 -16.94738 -16.14011 -16.03037 -15.85642 -15.30235 -15.18726 -14.43079 -14.30637 -13.61734 -13.32672 -13.07270 -12.55031 -12.26381 -12.14586 -11.81904 -11.65013 -11.39827 -11.25487 -11.03023 -10.77617 -10.61149 -10.54390 -10.16615 -9.70751 -9.66869 -9.26304 -9.06419 -9.01919 -8.30973 -5.96851 -3.98321 2.91055 3.21871 3.37191 3.40528 3.44478 3.58006 4.18372 4.30318 4.47420 4.50028 4.69448 4.88585 4.92979 5.15122 5.23782 5.33772 5.39132 5.41844 5.43021 5.48118 5.62526 5.71073 5.73133 5.79227 6.25942 6.38071 6.43807 6.73400 6.93932 7.17029 7.56028 7.71663 7.84659 8.03866 8.43128 8.47988 9.08612 9.65565 11.14674 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.070119 B = 0.003229 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.222836 B = 8668.459187 C = 8883.999280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.512 3.488 13 O -0.538 6.538 14 N -0.742 5.742 15 C 0.128 3.872 16 C -0.135 4.135 17 H 0.091 0.909 18 C -0.148 4.148 19 C 0.044 3.956 20 O -0.377 6.377 21 C 0.047 3.953 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.399 0.601 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 -23.091 0.431 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.300 3.700 13 O -0.414 6.414 14 N -0.396 5.396 15 C 0.004 3.996 16 C -0.154 4.154 17 H 0.110 0.890 18 C -0.186 4.186 19 C -0.033 4.033 20 O -0.296 6.296 21 C -0.029 4.029 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.848 -22.940 0.521 23.122 hybrid contribution 0.102 0.943 -0.141 0.959 sum 2.950 -21.998 0.380 22.198 Atomic orbital electron populations 1.69952 1.06039 1.26654 1.51135 1.25019 0.94860 0.99242 0.95376 0.86648 0.79570 0.83056 0.78683 1.20229 1.21327 1.20228 1.21245 0.93163 0.91050 1.50273 0.92630 1.19128 0.93962 0.91446 0.97115 1.21446 0.98644 0.91566 1.01673 1.21849 0.98141 0.94091 1.03776 1.21290 0.90406 0.83701 0.74565 1.90679 1.17390 1.84737 1.48561 1.46151 1.09991 1.05847 1.77626 1.21338 0.91846 0.83870 1.02552 1.22811 0.98322 0.94704 0.99584 0.89048 1.22938 1.00231 0.96300 0.99136 1.23432 0.84622 1.00310 0.94959 1.89160 1.30491 1.23895 1.86004 1.23602 1.01551 0.82762 0.95029 0.93007 0.96614 0.96601 0.92726 0.92720 0.89348 0.89320 0.76686 0.91291 0.91433 0.90180 0.89871 0.89024 0.92095 0.91643 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.06 4.44 -26.74 -0.12 -2.18 16 11 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 12 C 0.51 8.07 7.83 -10.98 -0.09 7.98 16 13 O -0.54 -10.71 15.98 5.55 0.09 -10.62 16 14 N -0.74 -8.23 5.42 -60.29 -0.33 -8.55 16 15 C 0.13 1.25 4.82 -4.04 -0.02 1.23 16 16 C -0.14 -0.99 3.16 -89.05 -0.28 -1.27 16 17 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 18 C -0.15 -0.94 6.74 -25.16 -0.17 -1.11 16 19 C 0.04 0.31 7.64 37.94 0.29 0.60 16 20 O -0.38 -3.68 11.65 -35.23 -0.41 -4.09 16 21 C 0.05 0.38 6.97 37.93 0.26 0.65 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 26 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.40 3.29 8.38 -40.82 -0.34 2.95 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.72 8.02 -51.93 -0.42 0.31 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.49 7.73 -51.93 -0.40 0.09 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.07 0.55 7.78 -51.93 -0.40 0.15 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -34.03 309.61 -7.27 -41.30 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.17 Total: -3.29 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.83 Total: -10.03 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.41 Total: -35.02 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.32 Total: -14.72 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.03 -7.27 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326727868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.272 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds