Wall clock time and date at job start Thu Apr 9 2020 12:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09007 * 109.47079 * 302.17855 * 3 2 1 5 5 C 1.50703 * 109.47156 * 62.17585 * 3 2 1 6 6 H 1.07999 * 119.99306 * 84.57731 * 5 3 2 7 7 C 1.37872 * 120.00502 * 264.58460 * 5 3 2 8 8 N 1.31516 * 119.99625 * 358.04982 * 7 5 3 9 9 Si 1.86794 * 120.00260 * 178.05706 * 7 5 3 10 10 H 1.48493 * 109.47455 * 89.99524 * 9 7 5 11 11 H 1.48500 * 109.47493 * 209.99856 * 9 7 5 12 12 H 1.48503 * 109.46883 * 329.99855 * 9 7 5 13 13 N 1.46897 * 109.47584 * 182.18157 * 3 2 1 14 14 C 1.47903 * 110.99614 * 299.98564 * 13 3 2 15 15 C 1.53994 * 107.05472 * 145.84305 * 14 13 3 16 16 C 1.54585 * 105.14394 * 358.77311 * 15 14 13 17 17 C 1.48539 * 110.99838 * 57.37647 * 13 3 2 18 18 H 1.08994 * 110.66857 * 318.71800 * 17 13 3 19 19 C 1.50701 * 110.66406 * 81.68060 * 17 13 3 20 20 O 1.20824 * 120.00134 * 0.02562 * 19 17 13 21 21 O 1.34234 * 119.99880 * 179.97438 * 19 17 13 22 22 C 1.45197 * 116.99891 * 180.02562 * 21 19 17 23 23 H 1.08997 * 109.47047 * 55.80412 * 1 2 3 24 24 H 1.08997 * 109.47165 * 175.80550 * 1 2 3 25 25 H 1.09001 * 109.46706 * 295.80648 * 1 2 3 26 26 H 1.09004 * 109.47083 * 239.99864 * 2 1 3 27 27 H 1.08994 * 109.47496 * 119.99920 * 2 1 3 28 28 H 0.97006 * 119.99553 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.91708 * 26.48713 * 14 13 3 30 30 H 1.08998 * 110.08019 * 265.28283 * 14 13 3 31 31 H 1.09001 * 110.30551 * 117.69196 * 15 14 13 32 32 H 1.09004 * 110.30402 * 239.85325 * 15 14 13 33 33 H 1.09000 * 110.72574 * 96.39957 * 16 15 14 34 34 H 1.08998 * 110.72730 * 219.68587 * 16 15 14 35 35 H 1.09009 * 109.47099 * 299.99942 * 22 21 19 36 36 H 1.08999 * 109.47508 * 59.99877 * 22 21 19 37 37 H 1.09002 * 109.47119 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6452 1.9675 -0.8699 5 6 1.5823 2.1372 1.2566 6 1 2.1540 2.0375 2.1674 7 6 0.4337 2.8997 1.2434 8 7 -0.2415 3.0522 0.1252 9 14 -0.1632 3.7164 2.8137 10 1 0.4371 5.0699 2.9269 11 1 -1.6433 3.8326 2.7796 12 1 0.2420 2.8959 3.9833 13 7 3.5081 1.4429 -0.0527 14 6 4.0805 0.7378 1.1146 15 6 5.3634 0.0350 0.6333 16 6 5.4603 0.3598 -0.8749 17 6 3.9980 0.7103 -1.2484 18 1 3.4145 -0.1960 -1.4102 19 6 3.9540 1.5938 -2.4684 20 8 3.5565 2.7311 -2.3767 21 8 4.3575 1.1177 -3.6569 22 6 4.2881 2.0248 -4.7884 23 1 -0.3633 0.5776 -0.8500 24 1 -0.3633 -1.0249 -0.0752 25 1 -0.3633 0.4474 0.9252 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 -1.0494 3.5891 0.1159 29 1 3.3704 -0.0002 1.4875 30 1 4.3214 1.4519 1.9020 31 1 6.2316 0.4292 1.1617 32 1 5.2844 -1.0416 0.7843 33 1 6.1168 1.2133 -1.0444 34 1 5.8037 -0.5096 -1.4355 35 1 3.2561 2.3438 -4.9357 36 1 4.9135 2.8962 -4.5945 37 1 4.6420 1.5154 -5.6848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050050688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:47 Heat of formation + Delta-G solvation = -75.756279 kcal Electronic energy + Delta-G solvation = -18660.524098 eV Core-core repulsion = 15824.299139 eV Total energy + Delta-G solvation = -2836.224959 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.11749 -38.28952 -35.75279 -34.29588 -31.49824 -29.76417 -29.54780 -27.11162 -25.90158 -23.30631 -22.54194 -20.90333 -20.31155 -18.71486 -17.09362 -16.11631 -16.04053 -15.92359 -15.39145 -14.42940 -14.11956 -13.63364 -13.24063 -12.97409 -12.68923 -12.46903 -12.19065 -11.86353 -11.85020 -11.32051 -11.04982 -10.87434 -10.68313 -10.59429 -10.49969 -10.37643 -10.33471 -10.28715 -9.78799 -9.56488 -9.35546 -8.82557 -8.39241 -7.23514 -5.96060 -3.97989 2.84339 3.08693 3.34561 3.41167 3.43158 4.45535 4.88936 5.05075 5.07626 5.29488 5.33826 5.41655 5.50022 5.57606 5.65670 5.76298 5.91560 6.08220 6.16749 6.26135 6.28497 6.32389 6.58268 6.61186 6.70849 6.82795 6.96060 7.18343 7.22971 7.39827 7.64261 7.85808 8.05655 8.29838 8.42020 8.57727 9.08830 9.63907 11.12636 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.008569 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.150857 B = 3266.947121 C = 3696.918032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.146 4.146 3 C 0.191 3.809 4 H 0.079 0.921 5 C -0.496 4.496 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.485 5.485 14 C 0.043 3.957 15 C -0.132 4.132 16 C -0.107 4.107 17 C 0.061 3.939 18 H 0.088 0.912 19 C 0.463 3.537 20 O -0.470 6.470 21 O -0.371 6.371 22 C 0.037 3.963 23 H 0.055 0.945 24 H 0.013 0.987 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.044 0.956 28 H 0.260 0.740 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.787 -6.851 -4.676 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.185 4.185 3 C 0.085 3.915 4 H 0.097 0.903 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.210 5.210 14 C -0.085 4.085 15 C -0.170 4.170 16 C -0.145 4.145 17 C -0.049 4.049 18 H 0.105 0.895 19 C 0.303 3.697 20 O -0.353 6.353 21 O -0.289 6.289 22 C -0.057 4.057 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.642 -5.809 -4.757 11.448 hybrid contribution -0.802 -0.119 0.660 1.045 sum 7.840 -5.928 -4.097 10.649 Atomic orbital electron populations 1.21394 0.95415 0.97038 1.03650 1.22307 0.97510 1.01227 0.97465 1.19838 0.80115 0.90856 1.00653 0.90349 1.20865 1.07902 1.29906 0.94819 0.92572 1.24893 0.96959 0.95593 0.95945 1.69947 1.17133 1.39656 1.25449 0.86623 0.77702 0.80016 0.83788 1.20696 1.21354 1.19979 1.65074 1.12833 1.45793 0.97310 1.22742 0.93942 0.96848 0.94946 1.22467 0.99200 1.00108 0.95219 1.22377 0.94250 1.01364 0.96488 1.22430 0.97997 0.94778 0.89722 0.89515 1.23651 0.74372 0.87864 0.83799 1.90711 1.40226 1.19287 1.85034 1.86483 1.78830 1.45527 1.18024 1.23135 1.02556 0.93712 0.86330 0.92618 0.96750 0.91831 0.95883 0.93723 0.93025 0.92819 0.90701 0.91358 0.91836 0.90943 0.90788 0.92111 0.92302 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.77 37.16 0.33 -2.33 16 2 C -0.15 -3.24 4.79 -26.73 -0.13 -3.36 16 3 C 0.19 4.82 1.92 -68.87 -0.13 4.68 16 4 H 0.08 2.32 6.58 -51.92 -0.34 1.97 16 5 C -0.50 -13.53 7.42 -34.44 -0.26 -13.78 16 6 H 0.06 1.52 6.92 -52.49 -0.36 1.15 16 7 C 0.07 1.91 4.38 -17.82 -0.08 1.83 16 8 N -0.88 -25.50 11.79 55.43 0.65 -24.84 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.49 -10.78 4.60 -217.45 -1.00 -11.78 16 14 C 0.04 0.81 5.26 -2.75 -0.01 0.79 16 15 C -0.13 -1.90 6.93 -25.38 -0.18 -2.08 16 16 C -0.11 -1.59 6.49 -24.88 -0.16 -1.75 16 17 C 0.06 1.14 2.64 -66.93 -0.18 0.96 16 18 H 0.09 1.59 5.54 -51.93 -0.29 1.30 16 19 C 0.46 9.28 7.16 36.01 0.26 9.53 16 20 O -0.47 -11.32 15.55 -18.75 -0.29 -11.61 16 21 O -0.37 -6.16 10.57 -39.27 -0.41 -6.58 16 22 C 0.04 0.49 10.56 101.05 1.07 1.55 16 23 H 0.05 1.36 7.88 -51.93 -0.41 0.95 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 1.56 6.74 -51.93 -0.35 1.21 16 26 H 0.02 0.47 5.90 -51.93 -0.31 0.16 16 27 H 0.04 0.95 6.07 -51.93 -0.32 0.63 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.05 1.03 5.51 -51.93 -0.29 0.75 16 30 H 0.07 1.45 7.94 -51.93 -0.41 1.04 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 292.11 15.07 4.40 4.40 Total: -1.00 -31.08 292.11 -6.73 -37.81 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.58 Total: 0.00 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 0.53 Total: -3.95 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.35 Total: -36.62 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.71 Total: -18.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.08 -6.73 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050050688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.943 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds