Wall clock time and date at job start Thu Apr 9 2020 12:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46900 * 109.47303 * 64.99966 * 3 2 1 14 14 C 1.47436 * 110.99990 * 69.87060 * 13 3 2 15 15 C 1.54330 * 107.23044 * 123.26038 * 14 13 3 16 16 C 1.55137 * 103.01829 * 22.28266 * 15 14 13 17 17 C 1.47839 * 110.99897 * 190.71857 * 13 3 2 18 18 H 1.09006 * 110.37646 * 332.46498 * 17 13 3 19 19 C 1.50702 * 110.37296 * 94.80699 * 17 13 3 20 20 O 1.20820 * 120.00410 * 359.97438 * 19 17 13 21 21 O 1.34229 * 119.99755 * 180.02562 * 19 17 13 22 22 C 1.45207 * 116.99949 * 179.97438 * 21 19 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.89404 * 242.66179 * 14 13 3 30 30 H 1.09005 * 109.89272 * 3.69504 * 14 13 3 31 31 H 1.08994 * 110.70599 * 140.66496 * 15 14 13 32 32 H 1.08994 * 110.70058 * 263.72899 * 15 14 13 33 33 H 1.08999 * 110.98775 * 82.43609 * 16 15 14 34 34 H 1.08998 * 110.99220 * 206.25920 * 16 15 14 35 35 H 1.08999 * 109.47167 * 179.97438 * 22 21 19 36 36 H 1.09001 * 109.47228 * 300.00064 * 22 21 19 37 37 H 1.09002 * 109.46577 * 59.99856 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6514 2.0994 1.2552 14 6 2.4041 1.5464 2.3960 15 6 3.1299 2.7247 3.0791 16 6 2.2965 3.9546 2.6325 17 6 1.8982 3.5555 1.1897 18 1 2.7123 3.7717 0.4977 19 6 0.6457 4.2817 0.7713 20 8 -0.3656 3.6606 0.5448 21 8 0.6539 5.6184 0.6494 22 6 -0.5881 6.2508 0.2421 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 1.7179 1.0754 3.0998 30 1 3.1309 0.8155 2.0414 31 1 3.1056 2.6158 4.1633 32 1 4.1573 2.8024 2.7238 33 1 1.4145 4.0777 3.2611 34 1 2.9043 4.8594 2.6337 35 1 -0.4441 7.3296 0.1827 36 1 -0.8869 5.8695 -0.7344 37 1 -1.3658 6.0280 0.9726 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050050693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:49 Heat of formation + Delta-G solvation = -83.683077 kcal Electronic energy + Delta-G solvation = -18700.049556 eV Core-core repulsion = 15863.480865 eV Total energy + Delta-G solvation = -2836.568691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05751 -38.20157 -35.75566 -34.15497 -31.65302 -29.61319 -29.36542 -27.07309 -26.22088 -23.20251 -22.24469 -21.02850 -19.80348 -18.74514 -17.24767 -16.52646 -15.96858 -15.80115 -15.37858 -14.42517 -13.99053 -13.29213 -13.05387 -12.90930 -12.76182 -12.54330 -12.09827 -11.83203 -11.62173 -11.24359 -11.13258 -10.92537 -10.78606 -10.65590 -10.50585 -10.38649 -10.14815 -10.08693 -9.67873 -9.56245 -9.47065 -9.03625 -8.38092 -7.25324 -6.01955 -4.15881 2.85186 3.12107 3.25585 3.31625 3.33035 4.36122 4.96880 5.10059 5.17693 5.23389 5.32202 5.39471 5.53887 5.58530 5.79417 5.92966 6.04633 6.17630 6.28646 6.44106 6.48940 6.60300 6.73994 6.80800 6.83457 6.83981 7.12408 7.30469 7.36196 7.60158 7.74789 7.92608 8.10086 8.17008 8.42793 8.44280 8.94009 9.51331 10.97826 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021214 B = 0.008766 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.546885 B = 3193.473002 C = 3342.302199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.212 3.788 4 H 0.036 0.964 5 C -0.550 4.550 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.508 5.508 14 C 0.050 3.950 15 C -0.137 4.137 16 C -0.112 4.112 17 C 0.086 3.914 18 H 0.102 0.898 19 C 0.466 3.534 20 O -0.486 6.486 21 O -0.369 6.369 22 C 0.037 3.963 23 H 0.022 0.978 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.092 0.908 28 H 0.262 0.738 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 7.515 7.034 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.054 0.946 5 C -0.589 4.589 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.519 5.519 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.233 5.233 14 C -0.078 4.078 15 C -0.176 4.176 16 C -0.151 4.151 17 C -0.025 4.025 18 H 0.119 0.881 19 C 0.307 3.693 20 O -0.370 6.370 21 O -0.286 6.286 22 C -0.057 4.057 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.424 7.127 6.818 10.441 hybrid contribution 1.646 0.152 -0.502 1.727 sum -1.778 7.279 6.316 9.800 Atomic orbital electron populations 1.21677 0.98593 0.98055 1.01004 1.21528 0.92507 0.98612 1.01753 1.19461 0.92940 0.91619 0.85423 0.94648 1.21767 0.92512 1.38854 1.05778 0.92184 1.24935 0.97872 0.94928 0.95629 1.69883 1.34961 1.37751 1.09303 0.86728 0.86036 0.78247 0.77431 1.20250 1.21252 1.20303 1.63359 1.54801 0.98803 1.06305 1.22711 0.95995 0.96851 0.92238 1.22784 0.99574 0.95208 0.99994 1.22590 0.99909 0.98552 0.94015 1.21983 0.91158 0.91155 0.98173 0.88075 1.24016 0.91277 0.80005 0.73983 1.90610 1.34356 1.67423 1.44624 1.86517 1.38404 1.23436 1.80222 1.23120 0.85002 0.97257 1.00345 0.95846 0.94340 0.93080 0.95000 0.89018 0.92744 0.92515 0.90091 0.91634 0.91162 0.91264 0.90593 0.88781 0.92245 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.80 37.16 0.36 -2.66 16 2 C -0.11 -2.57 5.21 -26.73 -0.14 -2.71 16 3 C 0.21 5.26 1.62 -68.86 -0.11 5.15 16 4 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 5 C -0.55 -14.17 6.24 -34.44 -0.22 -14.39 16 6 H 0.06 1.50 6.22 -52.49 -0.33 1.17 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.58 11.29 55.43 0.63 -23.95 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.51 -10.94 3.76 -218.21 -0.82 -11.76 16 14 C 0.05 0.95 5.33 -2.83 -0.02 0.93 16 15 C -0.14 -2.15 6.72 -24.90 -0.17 -2.32 16 16 C -0.11 -1.75 6.48 -24.59 -0.16 -1.91 16 17 C 0.09 1.67 2.70 -67.34 -0.18 1.49 16 18 H 0.10 2.13 7.10 -51.93 -0.37 1.76 16 19 C 0.47 9.17 7.30 36.01 0.26 9.43 16 20 O -0.49 -10.86 16.23 -18.75 -0.30 -11.16 16 21 O -0.37 -6.15 10.57 -39.26 -0.41 -6.57 16 22 C 0.04 0.48 10.56 101.05 1.07 1.54 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 1.13 7.75 -51.93 -0.40 0.73 16 26 H 0.03 0.75 7.04 -51.93 -0.37 0.38 16 27 H 0.09 2.47 5.95 -51.93 -0.31 2.16 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.70 5.67 -51.93 -0.29 1.41 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.12 7.73 -51.93 -0.40 0.72 16 33 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 37 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -29.15 296.99 -6.67 -35.82 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.82 Total: 1.30 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 0.61 Total: -3.69 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.19 Total: -35.70 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.72 Total: -17.73 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.15 -6.67 -35.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050050693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.858 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds