Wall clock time and date at job start Thu Apr 9 2020 12:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 C 1.53002 * 109.47290 * 120.00731 * 2 1 3 5 5 C 1.53007 * 109.46582 * 299.99338 * 4 2 1 6 6 N 1.46904 * 109.46668 * 180.02562 * 5 4 2 7 7 C 1.47959 * 110.99462 * 190.00235 * 6 5 4 8 8 C 1.53940 * 86.17699 * 222.41626 * 7 6 5 9 9 C 1.50706 * 113.72960 * 138.08084 * 8 7 6 10 10 H 1.07995 * 120.00167 * 1.62264 * 9 8 7 11 11 C 1.37879 * 119.99394 * 181.89962 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 C 1.48181 * 111.07114 * 90.56996 * 6 5 4 18 18 C 1.50706 * 109.46437 * 240.00196 * 2 1 3 19 19 O 1.20826 * 119.99806 * 239.99739 * 18 2 1 20 20 O 1.34225 * 119.99939 * 60.00282 * 18 2 1 21 21 H 1.09006 * 109.46844 * 299.99471 * 1 2 3 22 22 H 1.08995 * 109.46958 * 59.99244 * 1 2 3 23 23 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46883 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47306 * 300.00060 * 3 2 1 26 26 H 1.09001 * 109.47221 * 60.00372 * 3 2 1 27 27 H 1.09001 * 109.47194 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47369 * 59.99201 * 4 2 1 29 29 H 1.09001 * 109.46737 * 60.00478 * 5 4 2 30 30 H 1.09000 * 109.47157 * 299.99993 * 5 4 2 31 31 H 1.08999 * 113.75755 * 108.10617 * 7 6 5 32 32 H 1.08998 * 113.86166 * 336.74626 * 7 6 5 33 33 H 1.09004 * 113.73426 * 269.25544 * 8 7 6 34 34 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 35 35 H 1.09002 * 113.76007 * 23.23287 * 17 6 5 36 36 H 1.09000 * 113.82508 * 251.80992 * 17 6 5 37 37 H 0.96704 * 116.99862 * 179.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5302 -0.0001 2.4985 6 7 2.0204 -0.6924 3.6978 7 6 1.3601 -0.1740 4.9162 8 6 2.7535 -0.2255 5.5686 9 6 3.0680 0.9756 6.4228 10 1 2.3318 1.7554 6.5501 11 6 4.2978 1.0815 7.0372 12 7 5.1965 0.1347 6.8773 13 14 4.6874 2.5699 8.0965 14 1 3.5176 3.4844 8.1148 15 1 4.9913 2.1264 9.4808 16 1 5.8634 3.2825 7.5356 17 6 3.3204 -0.1357 4.1404 18 6 2.0322 -0.7104 -1.2306 19 8 2.7269 -1.6928 -1.1198 20 8 1.7079 -0.2517 -2.4496 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 3.1301 -0.7210 1.2494 28 1 1.6767 -1.7490 1.2491 29 1 0.4402 -0.0001 2.4985 30 1 1.8936 1.0275 2.4985 31 1 0.6434 -0.8675 5.3561 32 1 0.9633 0.8353 4.8072 33 1 2.9695 -1.1702 6.0678 34 1 6.0617 0.2094 7.3092 35 1 3.4990 0.8850 3.8021 36 1 4.1670 -0.7985 3.9614 37 1 2.0539 -0.7405 -3.2090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590670709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:35 Heat of formation + Delta-G solvation = -97.770211 kcal Electronic energy + Delta-G solvation = -17648.219478 eV Core-core repulsion = 14811.039924 eV Total energy + Delta-G solvation = -2837.179555 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66661 -40.41307 -37.65356 -37.02625 -34.68397 -31.86679 -28.61948 -28.34012 -26.75747 -26.29698 -25.21161 -22.79278 -20.42256 -20.15163 -18.88950 -18.61821 -17.50275 -16.81016 -16.64792 -16.34165 -16.00251 -15.60225 -14.88062 -14.65162 -14.45650 -13.90847 -13.77403 -13.42807 -13.20385 -13.03083 -12.87678 -12.71476 -12.57707 -12.56123 -12.31880 -12.08384 -11.92120 -11.61874 -11.45509 -11.28461 -11.05059 -10.87368 -10.50871 -9.53311 -8.13802 -6.25695 1.17547 1.42218 1.44021 1.55646 2.04728 2.43297 3.16070 3.20822 3.68547 3.77043 3.88412 4.11135 4.31391 4.34928 4.42337 4.56272 4.60891 4.70078 4.76768 4.82944 4.87181 4.89513 4.95453 4.97479 5.04973 5.20804 5.25581 5.30279 5.34735 5.57585 5.62623 5.64714 5.86633 6.30754 6.44447 6.84241 6.97951 7.43196 8.96019 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040371 B = 0.004695 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.403895 B = 5962.520819 C = 6003.489346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.083 4.083 5 C 0.024 3.976 6 N -0.497 5.497 7 C 0.016 3.984 8 C 0.016 3.984 9 C -0.530 4.530 10 H 0.062 0.938 11 C 0.013 3.987 12 N -0.924 5.924 13 Si 0.958 3.042 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.025 3.975 18 C 0.492 3.508 19 O -0.554 6.554 20 O -0.503 6.503 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.262 0.738 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 3.534 -16.317 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.121 4.121 5 C -0.104 4.104 6 N -0.219 5.219 7 C -0.113 4.113 8 C -0.003 4.003 9 C -0.568 4.568 10 H 0.080 0.920 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.783 3.217 14 H -0.185 1.185 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.104 4.104 18 C 0.336 3.664 19 O -0.444 6.444 20 O -0.316 6.316 21 H 0.103 0.897 22 H 0.104 0.896 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.761 2.747 -16.112 19.038 hybrid contribution 1.198 0.719 0.262 1.422 sum -8.563 3.466 -15.850 18.346 Atomic orbital electron populations 1.21928 0.89582 1.03264 1.04764 1.20513 0.99446 0.96862 0.88297 1.21941 1.01026 0.92237 1.04686 1.21248 0.99912 0.99170 0.91781 1.22767 1.00968 0.96087 0.90580 1.68357 1.03969 1.47814 1.01799 1.23905 0.97741 0.98416 0.91188 1.20327 0.91846 0.96059 0.92076 1.21481 0.99804 1.05602 1.29923 0.91982 1.25852 0.96338 0.98962 0.97488 1.70116 1.06463 1.34894 1.44848 0.85504 0.78296 0.79512 0.78338 1.18520 1.20728 1.20747 1.23845 0.92059 0.96098 0.98407 1.23678 0.75735 0.81421 0.85610 1.90727 1.37670 1.28148 1.87878 1.84481 1.71759 1.58819 1.16560 0.89663 0.89586 0.92216 0.93227 0.89360 0.89996 0.93833 0.91990 0.89051 0.93378 0.90305 0.91360 0.96038 0.92951 0.92964 0.93943 0.71285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.05 71.98 0.58 -1.75 16 2 C -0.05 -1.10 0.74 -52.92 -0.04 -1.14 16 3 C -0.14 -2.77 8.05 71.98 0.58 -2.19 16 4 C -0.08 -2.48 3.87 30.60 0.12 -2.36 16 5 C 0.02 0.75 4.10 86.30 0.35 1.10 16 6 N -0.50 -19.99 6.16 -907.36 -5.59 -25.58 16 7 C 0.02 0.65 7.50 86.41 0.65 1.30 16 8 C 0.02 0.82 3.60 -10.89 -0.04 0.78 16 9 C -0.53 -28.88 8.77 25.60 0.22 -28.66 16 10 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 11 C 0.01 0.70 5.46 84.66 0.46 1.16 16 12 N -0.92 -54.80 13.29 21.45 0.28 -54.52 16 13 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 14 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 C 0.03 1.19 7.53 86.37 0.65 1.84 16 18 C 0.49 11.73 6.92 71.24 0.49 12.23 16 19 O -0.55 -17.80 16.74 21.96 0.37 -17.43 16 20 O -0.50 -7.99 13.23 -51.37 -0.68 -8.66 16 21 H 0.08 1.31 6.43 -2.38 -0.02 1.30 16 22 H 0.09 1.14 8.11 -2.39 -0.02 1.13 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 1.35 8.11 -2.39 -0.02 1.33 16 26 H 0.08 1.55 6.43 -2.39 -0.02 1.53 16 27 H 0.04 1.52 8.10 -2.39 -0.02 1.50 16 28 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 29 H 0.09 2.37 6.37 -2.39 -0.02 2.36 16 30 H 0.05 1.47 5.67 -2.39 -0.01 1.45 16 31 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.07 2.59 7.88 -2.39 -0.02 2.57 16 33 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.05 2.46 7.44 -2.39 -0.02 2.44 16 36 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.43 3.25 9.10 -74.05 -0.67 2.58 16 Total: -1.00 -67.84 303.44 0.83 -67.02 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.38 Total: 11.76 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 4.03 Total: -17.69 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -5.30 Total: -80.09 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.31 Total: -26.10 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -67.84 0.83 -67.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590670709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.754 kcal (2) G-P(sol) polarization free energy of solvation -67.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds