Wall clock time and date at job start Thu Apr 9 2020 12:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 112.84954 * 2 1 4 4 N 1.46500 * 109.47326 * 48.80598 * 3 2 1 5 5 C 1.36939 * 119.99675 * 264.61773 * 4 3 2 6 6 H 1.08001 * 119.99628 * 145.38318 * 5 4 3 7 7 C 1.38807 * 120.00112 * 325.37492 * 5 4 3 8 8 N 1.31622 * 120.00171 * 338.54022 * 7 5 4 9 9 Si 1.86802 * 120.00167 * 158.53673 * 7 5 4 10 10 H 1.48498 * 109.47095 * 89.99903 * 9 7 5 11 11 H 1.48497 * 109.47106 * 210.00466 * 9 7 5 12 12 H 1.48496 * 109.46694 * 330.00346 * 9 7 5 13 13 C 1.46496 * 120.00020 * 84.61071 * 4 3 2 14 14 C 1.53005 * 109.46907 * 90.00202 * 13 4 3 15 15 C 1.50700 * 109.47028 * 179.97438 * 14 13 4 16 16 O 1.20827 * 120.00062 * 0.02562 * 15 14 13 17 17 O 1.34230 * 119.99997 * 180.02562 * 15 14 13 18 18 C 1.53782 * 113.69653 * 131.26922 * 2 1 3 19 19 C 1.53778 * 87.07950 * 89.12555 * 18 2 1 20 20 C 1.53778 * 87.08305 * 25.43794 * 19 18 2 21 21 H 1.08994 * 109.47223 * 69.66671 * 1 2 3 22 22 H 1.09000 * 109.47025 * 189.66739 * 1 2 3 23 23 H 1.09003 * 109.47002 * 309.66574 * 1 2 3 24 24 H 1.08997 * 109.47270 * 288.80232 * 3 2 1 25 25 H 1.09005 * 109.47561 * 168.80874 * 3 2 1 26 26 H 0.97001 * 120.00028 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47399 * 330.00553 * 13 4 3 28 28 H 1.09002 * 109.47344 * 209.99874 * 13 4 3 29 29 H 1.08996 * 109.47518 * 300.00009 * 14 13 4 30 30 H 1.09003 * 109.46804 * 60.00532 * 14 13 4 31 31 H 0.96704 * 117.00239 * 180.02562 * 17 15 14 32 32 H 1.08991 * 113.62014 * 203.67963 * 18 2 1 33 33 H 1.09008 * 113.60890 * 334.57941 * 18 2 1 34 34 H 1.09004 * 113.61608 * 270.88210 * 19 18 2 35 35 H 1.09006 * 113.68907 * 140.00194 * 19 18 2 36 36 H 1.08999 * 113.61101 * 220.02239 * 20 19 18 37 37 H 1.08995 * 113.61660 * 89.11429 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4754 2.2132 1.0393 5 6 0.4168 3.0208 0.7195 6 1 -0.3859 3.1646 1.4276 7 6 0.3755 3.6547 -0.5147 8 7 1.4857 3.8402 -1.1968 9 14 -1.2560 4.2444 -1.2077 10 1 -1.5083 5.6382 -0.7617 11 1 -1.2086 4.2002 -2.6912 12 1 -2.3478 3.3636 -0.7208 13 6 1.9593 2.1524 2.4208 14 6 3.0380 3.2170 2.6306 15 6 3.5352 3.1549 4.0519 16 8 3.0745 2.3422 4.8181 17 8 4.4900 4.0025 4.4665 18 6 2.1480 -0.9288 1.0584 19 6 2.0951 -2.0419 -0.0013 20 6 2.1461 -0.9280 -1.0603 21 1 -0.3633 0.3571 -0.9636 22 1 -0.3633 -1.0131 0.1726 23 1 -0.3633 0.6560 0.7911 24 1 1.9600 1.8734 -0.9728 25 1 3.1942 1.3534 0.1995 26 1 1.4568 4.2829 -2.0595 27 1 2.3798 1.1658 2.6154 28 1 1.1303 2.3355 3.1045 29 1 3.8669 3.0341 1.9470 30 1 2.6174 4.2037 2.4361 31 1 4.7770 3.9243 5.3866 32 1 3.1609 -0.6487 1.3472 33 1 1.4974 -1.1094 1.9142 34 1 1.1595 -2.6013 -0.0006 35 1 2.9738 -2.6869 -0.0033 36 1 1.4939 -1.1079 -1.9149 37 1 3.1585 -0.6477 -1.3507 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594010889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:37 Heat of formation + Delta-G solvation = -64.652614 kcal Electronic energy + Delta-G solvation = -18307.536580 eV Core-core repulsion = 15471.793112 eV Total energy + Delta-G solvation = -2835.743468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.77725 -38.87205 -35.91514 -35.26843 -32.00187 -30.13955 -28.23447 -26.20807 -25.15718 -24.51178 -22.47993 -21.04502 -19.64781 -17.71269 -17.56270 -16.69399 -15.92485 -15.53425 -14.93811 -14.51226 -14.16913 -13.74914 -13.36430 -12.91635 -12.64972 -12.35317 -11.88268 -11.81930 -11.34617 -11.27532 -11.20556 -11.09700 -10.82136 -10.58583 -10.37990 -10.24943 -10.17929 -10.05773 -9.91414 -9.74104 -9.26739 -9.14965 -8.47351 -6.63012 -5.81607 -3.35554 2.67295 3.33931 3.42801 3.45008 3.55873 4.47278 5.18319 5.28807 5.32595 5.38582 5.46745 5.63819 5.82824 5.88605 6.09476 6.14195 6.23145 6.29538 6.33594 6.40603 6.44392 6.52147 6.72489 6.76151 6.78459 6.82672 6.88147 6.99649 7.13406 7.21214 7.45807 7.73634 7.79864 8.30879 8.48942 9.16871 9.79494 10.36003 11.18546 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.010549 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.879332 B = 2653.767853 C = 4072.333304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.092 4.092 3 C 0.160 3.840 4 N -0.575 5.575 5 C -0.255 4.255 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.887 5.887 9 Si 0.892 3.108 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.277 1.277 13 C 0.160 3.840 14 C -0.132 4.132 15 C 0.478 3.522 16 O -0.528 6.528 17 O -0.525 6.525 18 C -0.130 4.130 19 C -0.143 4.143 20 C -0.135 4.135 21 H 0.045 0.955 22 H 0.026 0.974 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.020 0.980 26 H 0.255 0.745 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.397 0.603 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -5.062 3.847 7.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C 0.034 3.966 4 N -0.294 5.294 5 C -0.385 4.385 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.033 3.967 14 C -0.173 4.173 15 C 0.321 3.679 16 O -0.417 6.417 17 O -0.336 6.336 18 C -0.167 4.167 19 C -0.180 4.180 20 C -0.173 4.173 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.096 0.904 24 H 0.118 0.882 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.254 0.746 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.242 -5.165 3.461 7.012 hybrid contribution -0.449 0.379 0.165 0.610 sum 2.793 -4.787 3.626 6.623 Atomic orbital electron populations 1.21367 0.93490 0.99028 1.02697 1.22428 0.96127 0.97015 0.93871 1.20962 0.91937 0.87087 0.96628 1.43878 1.35577 1.47236 1.02670 1.19029 0.96789 1.21617 1.01018 0.92042 1.25061 0.96317 0.97399 0.99897 1.69967 1.25096 1.43217 1.14710 0.86472 0.84442 0.78705 0.78256 1.21381 1.21558 1.20244 1.20815 0.93422 0.94170 0.88340 1.22479 1.01924 1.06331 0.86564 1.24480 0.74989 0.76315 0.92093 1.90650 1.56709 1.37339 1.57015 1.84670 1.54547 1.59080 1.35342 1.22968 1.00363 0.96647 0.96765 1.22811 1.00574 0.96346 0.98275 1.22957 1.00707 0.96851 0.96750 0.93557 0.95446 0.90376 0.88151 0.96117 0.93534 0.93448 0.93138 0.88742 0.87621 0.74602 0.91184 0.92425 0.91032 0.92787 0.92456 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 8.57 37.16 0.32 -1.80 16 2 C -0.09 -1.74 1.17 -153.70 -0.18 -1.92 16 3 C 0.16 3.52 4.76 -4.04 -0.02 3.50 16 4 N -0.57 -13.19 1.88 -173.24 -0.33 -13.51 16 5 C -0.25 -6.45 7.83 -15.06 -0.12 -6.57 16 6 H 0.06 1.58 7.92 -52.49 -0.42 1.16 16 7 C 0.01 0.35 4.93 -17.43 -0.09 0.26 16 8 N -0.89 -24.03 11.34 55.49 0.63 -23.40 16 9 Si 0.89 20.77 29.61 -169.99 -5.03 15.73 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.16 3.30 4.97 -4.04 -0.02 3.28 16 14 C -0.13 -2.49 6.14 -27.88 -0.17 -2.66 16 15 C 0.48 8.20 8.33 36.01 0.30 8.50 16 16 O -0.53 -10.21 16.74 -18.75 -0.31 -10.52 16 17 O -0.53 -7.38 13.42 -39.26 -0.53 -7.91 16 18 C -0.13 -2.19 6.01 -25.92 -0.16 -2.35 16 19 C -0.14 -2.13 7.73 -25.92 -0.20 -2.33 16 20 C -0.13 -2.23 7.23 -25.92 -0.19 -2.42 16 21 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.03 0.47 7.34 -51.93 -0.38 0.08 16 23 H 0.08 1.68 6.32 -51.93 -0.33 1.35 16 24 H 0.10 2.54 5.36 -51.93 -0.28 2.26 16 25 H 0.02 0.44 7.91 -51.93 -0.41 0.03 16 26 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.05 0.95 6.74 -51.93 -0.35 0.60 16 28 H 0.05 1.08 8.00 -51.93 -0.42 0.66 16 29 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 31 H 0.40 3.62 9.10 45.56 0.41 4.04 16 32 H 0.07 1.18 7.90 -51.93 -0.41 0.77 16 33 H 0.06 0.98 8.10 -51.92 -0.42 0.56 16 34 H 0.07 1.03 7.64 -51.93 -0.40 0.63 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -28.04 301.40 -6.61 -34.65 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.06 Total: 4.93 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.52 Total: -4.51 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.30 Total: -36.91 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.84 Total: -18.43 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.04 -6.61 -34.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594010889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.004 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds