Wall clock time and date at job start Thu Apr 9 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34232 * 116.99955 * 2 1 4 4 O 1.20826 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99834 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47058 * 48.72170 * 5 3 2 7 7 C 1.53003 * 109.47400 * 288.71497 * 5 3 2 8 8 N 1.46905 * 109.47070 * 168.71475 * 5 3 2 9 9 C 1.46899 * 111.00148 * 178.42452 * 8 5 3 10 10 C 1.50704 * 109.46973 * 197.61423 * 9 8 5 11 11 H 1.08006 * 119.99741 * 5.98131 * 10 9 8 12 12 C 1.37871 * 119.99987 * 185.96829 * 10 9 8 13 13 N 1.31519 * 120.00376 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00125 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47229 * 89.99158 * 14 12 10 16 16 H 1.48501 * 109.47130 * 209.99758 * 14 12 10 17 17 H 1.48504 * 109.46800 * 329.99669 * 14 12 10 18 18 C 1.46904 * 111.00037 * 302.38293 * 8 5 3 19 19 C 1.53774 * 113.60966 * 254.67353 * 18 8 5 20 20 C 1.53786 * 87.08219 * 220.01617 * 19 18 8 21 21 C 1.53779 * 113.61474 * 157.17739 * 18 8 5 22 22 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47220 * 299.99392 * 1 2 3 24 24 H 1.09000 * 109.47501 * 59.99910 * 1 2 3 25 25 H 1.09001 * 109.46970 * 60.00469 * 7 5 3 26 26 H 1.08998 * 109.46831 * 179.97438 * 7 5 3 27 27 H 1.08993 * 109.47164 * 300.00028 * 7 5 3 28 28 H 1.08999 * 109.47037 * 317.61171 * 9 8 5 29 29 H 1.09000 * 109.47108 * 77.61760 * 9 8 5 30 30 H 0.97000 * 120.00193 * 180.02562 * 13 12 10 31 31 H 1.09001 * 112.84654 * 25.97941 * 18 8 5 32 32 H 1.09003 * 113.61820 * 334.56480 * 19 18 8 33 33 H 1.09000 * 113.61523 * 105.47410 * 19 18 8 34 34 H 1.08993 * 113.61712 * 270.88805 * 20 19 18 35 35 H 1.09002 * 113.61244 * 139.98123 * 20 19 18 36 36 H 1.08998 * 113.61249 * 254.52899 * 21 18 8 37 37 H 1.08999 * 113.61214 * 25.34538 * 21 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9648 0.6166 -0.7715 7 6 4.0993 0.8396 1.3671 8 7 3.9843 2.6568 -0.2706 9 6 5.4478 2.7796 -0.2408 10 6 5.8272 4.2301 -0.0882 11 1 5.0617 4.9740 0.0767 12 6 7.1514 4.6074 -0.1588 13 7 7.4825 5.8733 -0.0262 14 14 8.4753 3.3208 -0.4444 15 1 8.7013 3.1583 -1.9030 16 1 9.7370 3.7559 0.2067 17 1 8.0398 2.0252 0.1363 18 6 3.4423 3.1290 -1.5517 19 6 4.4891 3.1960 -2.6761 20 6 3.8246 4.5135 -3.1093 21 6 3.3493 4.6606 -1.6542 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 3.7892 -0.1858 1.5683 26 1 5.1878 0.8962 1.3673 27 1 3.7007 1.4978 2.1390 28 1 5.8431 2.2102 0.6005 29 1 5.8640 2.3910 -1.1702 30 1 8.4142 6.1387 -0.0762 31 1 2.5243 2.6157 -1.8379 32 1 5.5102 3.3199 -2.3153 33 1 4.3928 2.3963 -3.4106 34 1 3.0117 4.3786 -3.8227 35 1 4.5355 5.2807 -3.4161 36 1 2.3327 5.0433 -1.5636 37 1 4.0577 5.1849 -1.0129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332075815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:49 Heat of formation + Delta-G solvation = -32.542314 kcal Electronic energy + Delta-G solvation = -18626.831836 eV Core-core repulsion = 15792.480775 eV Total energy + Delta-G solvation = -2834.351061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46941 -38.79041 -36.23704 -34.94197 -32.65621 -30.31802 -27.79186 -27.65392 -24.90877 -23.94770 -23.45769 -21.21738 -19.73054 -18.32577 -17.42202 -17.06694 -16.32019 -15.99475 -15.50093 -14.71584 -14.30815 -13.84291 -13.73406 -13.10375 -12.78000 -12.54306 -12.36567 -12.01830 -11.86210 -11.78251 -11.43053 -11.15128 -10.99032 -10.73394 -10.64853 -10.50321 -9.99037 -9.95771 -9.79595 -9.59941 -9.35883 -8.85491 -8.54699 -7.34279 -6.05562 -4.02258 2.49713 2.83573 3.24660 3.33328 3.34326 4.38644 4.58149 5.01227 5.11288 5.16879 5.23474 5.34072 5.37378 5.49198 5.51583 5.60720 5.68454 5.84385 5.89847 6.07335 6.16686 6.35909 6.43068 6.52662 6.61202 6.67149 6.81162 6.84279 7.00845 7.16040 7.34918 7.68260 7.86538 7.93250 8.14427 8.64037 9.07019 9.54346 11.06149 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.008315 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.292578 B = 3366.620102 C = 3922.037210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.461 3.539 4 O -0.482 6.482 5 C 0.090 3.910 6 H 0.064 0.936 7 C -0.142 4.142 8 N -0.498 5.498 9 C 0.152 3.848 10 C -0.504 4.504 11 H 0.094 0.906 12 C 0.070 3.930 13 N -0.896 5.896 14 Si 0.866 3.134 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.267 1.267 18 C 0.073 3.927 19 C -0.177 4.177 20 C -0.139 4.139 21 C -0.128 4.128 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.002 0.998 30 H 0.263 0.737 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -11.481 -1.969 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.302 3.698 4 O -0.366 6.366 5 C -0.020 4.020 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.223 5.223 9 C 0.027 3.973 10 C -0.542 4.542 11 H 0.112 0.888 12 C -0.131 4.131 13 N -0.535 5.535 14 Si 0.693 3.307 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.035 4.035 19 C -0.216 4.216 20 C -0.177 4.177 21 C -0.166 4.166 22 H 0.115 0.885 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.153 -10.764 -1.570 14.217 hybrid contribution 0.815 -1.100 -0.897 1.637 sum -8.338 -11.865 -2.468 14.710 Atomic orbital electron populations 1.23174 0.77097 1.03128 1.02391 1.86514 1.22855 1.34268 1.84739 1.23941 0.92175 0.81093 0.72565 1.90667 1.66637 1.36017 1.43299 1.21219 0.86381 0.94294 1.00116 0.91829 1.21866 1.02857 1.00636 0.94562 1.61990 1.13640 1.14465 1.32204 1.20584 0.81702 0.99352 0.95698 1.21127 0.93315 0.91152 1.48559 0.88841 1.24868 0.98131 0.94923 0.95198 1.69875 1.17873 1.15271 1.50522 0.87012 0.82247 0.82721 0.78710 1.20295 1.21172 1.19212 1.23028 0.95840 0.97756 0.86917 1.23794 1.02868 0.96889 0.98019 1.22579 0.99488 0.98289 0.97338 1.23411 1.01231 0.95806 0.96110 0.88518 0.92052 0.92216 0.91948 0.90111 0.91108 0.94877 0.98012 0.92649 0.90736 0.86454 0.93951 0.92232 0.91608 0.93580 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.25 10.57 -39.26 -0.41 -5.67 16 3 C 0.46 7.91 6.28 36.00 0.23 8.14 16 4 O -0.48 -9.55 14.54 -18.75 -0.27 -9.82 16 5 C 0.09 1.57 2.58 -68.86 -0.18 1.40 16 6 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 7 C -0.14 -2.20 8.96 37.16 0.33 -1.86 16 8 N -0.50 -10.46 4.18 -220.55 -0.92 -11.39 16 9 C 0.15 3.45 3.22 -4.97 -0.02 3.44 16 10 C -0.50 -13.40 7.52 -34.44 -0.26 -13.66 16 11 H 0.09 2.74 5.56 -52.48 -0.29 2.45 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -26.38 13.96 55.43 0.77 -25.61 16 14 Si 0.87 20.47 27.36 -169.99 -4.65 15.82 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.00 6.72 56.52 0.38 -5.62 16 18 C 0.07 1.49 3.11 -66.90 -0.21 1.28 16 19 C -0.18 -3.49 6.69 -25.92 -0.17 -3.66 16 20 C -0.14 -2.62 8.08 -25.92 -0.21 -2.83 16 21 C -0.13 -2.70 7.49 -25.92 -0.19 -2.89 16 22 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 24 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.28 6.04 -51.93 -0.31 0.97 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.03 0.75 4.98 -51.93 -0.26 0.49 16 29 H 0.00 0.06 4.64 -51.93 -0.24 -0.18 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.07 1.47 6.06 -51.93 -0.31 1.16 16 32 H 0.12 2.62 4.67 -51.93 -0.24 2.37 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.13 3.07 4.43 -51.93 -0.23 2.84 16 LS Contribution 287.58 15.07 4.33 4.33 Total: -1.00 -29.90 287.58 -6.14 -36.04 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.28 Total: 3.65 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 0.29 Total: -7.36 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.15 Total: -37.00 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.69 Total: -15.49 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.65 Total: 15.82 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.90 -6.14 -36.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332075815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.499 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds